View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15567_low_9 (Length: 497)
Name: NF15567_low_9
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15567_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 10 - 481
Target Start/End: Complemental strand, 4646380 - 4645908
Alignment:
| Q |
10 |
cataggatgcaatcttatttgatttgttattgttatttgttctctaatatgatcagaatctatatataagcaagaaagggataataatcagttttgtgta |
109 |
Q |
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| T |
4646380 |
cataggatgcaatcttatttgatttgtgtttgttatttgttctctaatatgatcagaatctttatataagcaagaaagggataataatcagttttgtgta |
4646281 |
T |
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| Q |
110 |
aaaaacttgaaatgggaaacctcataataattgctacatgctatcttcaattctgattttagctaagagctaaaataaatgaaattggtaatgagggata |
209 |
Q |
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| T |
4646280 |
aagaacttgaaatgggaaacctcataataattgctacatgctatcttcaattctgattttagctaagagctaaaat-aatgaaattggtaatgagggaca |
4646182 |
T |
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| Q |
210 |
agttagtatccgccaaaggct---ggactcatcaatcaatcatcattaatttattcacaatcaaaacattatcctacttcctacctaacctttccattat |
306 |
Q |
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| T |
4646181 |
agttagtatccgccaaaggctggaggactcatcaatcagtcatcattaatttattcacaatcaaaacattatcctacttcctacctaacctttccattat |
4646082 |
T |
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| Q |
307 |
tagataactctactaggccccccatgcaacaatactagcacaaaaaagataggtacaaacttcaattgatggtcacaatctccatcaatattttgtatct |
406 |
Q |
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||||||||||||||||| ||| || |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4646081 |
tagataactctactagg-cccggatccaacaacactaacacaaaaaagataggtacaaacttcaattgatggtcacaatctccatcaatattttgtatct |
4645983 |
T |
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| Q |
407 |
gaacttattttcaaccacatgcaacatttttgcacaattgcttcattcaattcaacaaatgtgtggccatttttc |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4645982 |
gaacttattttcaaccacatgcaacatttttgcacaatagcttcattcaattcaacaaatgtgtggccatttttc |
4645908 |
T |
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