View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15568_low_1 (Length: 751)
Name: NF15568_low_1
Description: NF15568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15568_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 11 - 476
Target Start/End: Complemental strand, 35845 - 35380
Alignment:
| Q |
11 |
gagatgaacatacgagtttgaaaacaatgtgacaaattgtcatttttcaaaagaatagacatgaaaggagacaaaaagggacaagtgatttcaatcaagt |
110 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35845 |
gagatgaacatacgagtttgaaaacaatgtcacaaattgtcatttttcaaaagaatagacatgaaaggagacaaaaagggacaagtgatttcaatcaagt |
35746 |
T |
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| Q |
111 |
gataaaaggttataattaacaactttatatcctaggtgtatatcatatgggttgttatccaagtatgaaggtccttacaaaatacatataaaaactgaat |
210 |
Q |
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| T |
35745 |
gataaaaggttataattaacaactttatatcctaggtgtatatcatatgggttgttatccaagtatgaaggtccttacaaaatacatataaaaactgaat |
35646 |
T |
|
| Q |
211 |
gaaagtagttgatgaataaagaaagaacgaaagaataatacttggtagaatccaacagagtttagcattaggctaaaattcatggcagtgatagacaaat |
310 |
Q |
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| T |
35645 |
gaaagtagttgatgaataaagaaagaacgaaagaaaaatacttggtagaatccaacagagtttagcattaggctaaaattcatggcagtgatagacaaat |
35546 |
T |
|
| Q |
311 |
tggcgaccatagagaaccaaagaagctcccacatagggacatgctttgatgaagacgagtaaccggtagcattggagagtataccaacgagagcggtaac |
410 |
Q |
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| T |
35545 |
tggcgaccatagagaaccaaagaagctcccacatagggacatgctttgatgaagacgagtaaccggtagcattggagagtataccaacgagagcggtaac |
35446 |
T |
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| Q |
411 |
agcaaaatggcagccagttaacgtgctggctgaaagaaaaaagaaaatattgttgagatggatggc |
476 |
Q |
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| T |
35445 |
agcaaaatggcagccagttaacgtgctggctgaaagaaaaaagaaaatattgttgagatggatggc |
35380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 492 - 729
Target Start/End: Complemental strand, 35356 - 35119
Alignment:
| Q |
492 |
acatcaacaatgaatgaatgtgtgagagaaggtggctgaccaaaagtgaaaacatagccattgttggacatgagttgtttgttggcgatgataattccaa |
591 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35356 |
acatcaacaatgaatgaatgtgtgagagaaggtggctgaccaaaagtgaaaacatagccattgttggacatgagttgtttgttagcgatgataattccaa |
35257 |
T |
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| Q |
592 |
cggagctgacaatgttcatcccccatgctccaacattagataaagatgcttttttctttactactacattctccattatatctctctatctataataata |
691 |
Q |
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| T |
35256 |
cggagctgacaatgttcatcccccatgctccaacattagataaagatgcttttttctttactactacattctccattatatctctctatctataataata |
35157 |
T |
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| Q |
692 |
ataacaacatcaacattaatcaatttgaaggataaccg |
729 |
Q |
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| T |
35156 |
ataacaacaacaacattaatcaatttgaaggataaccg |
35119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 534 - 624
Target Start/End: Original strand, 8677443 - 8677533
Alignment:
| Q |
534 |
aaagtgaaaacatagccattgttggacatgagttgtttgttggcgatgataattccaacggagctgacaatgttcatcccccatgctccaa |
624 |
Q |
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| T |
8677443 |
aaagtgaaagcatagccattgttggacataagctgtttattagccatgataattccaacggaactcacaacgttcataccccatgctccaa |
8677533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 248 - 416
Target Start/End: Original strand, 8677160 - 8677325
Alignment:
| Q |
248 |
atacttggtagaatccaacagagtttagcattaggctaaaattcatggcagtgatagacaaattggcgaccatagagaaccaaagaagctcccacatagg |
347 |
Q |
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||||||||||||||||||| || || ||||| ||||| || ||||| | |||||||| | |||||| || ||||||||||| ||||||||||| ||| |
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| T |
8677160 |
atacttggtagaatccaacggaattgagcatgaggctcaagttcatcccggtgatagatatattggcaacagcagagaaccaaataagctcccacaaagg |
8677259 |
T |
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| Q |
348 |
gacatgctttgatgaagacgagtaaccggtagcattggagagtataccaacgagagcggtaacagcaaa |
416 |
Q |
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|||||||| |||| || |||||||||||||| |||| | ||| || ||||| ||||||||||| |
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| T |
8677260 |
aacatgctt---agaagcagaataaccggtagcatttgagacgagaccgacaagagcagtaacagcaaa |
8677325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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