View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15568_low_2 (Length: 337)
Name: NF15568_low_2
Description: NF15568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15568_low_2 |
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| [»] scaffold0063 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 36040137 - 36040450
Alignment:
| Q |
18 |
atatagagtatatgccgttatgttctgtcaaatatcataccataattccttagaaaattgcactacgagccccatgaccatttaatgttgcaccgtgcat |
117 |
Q |
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| T |
36040137 |
atataaagtatatgctgttatgttctgtcaaatatcataccataattccttagaaaattgcactacgagccccatgaccatttaatgttgcaccgtgcat |
36040236 |
T |
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| Q |
118 |
ccaaccaccaaacacggctagcgctgatttgcctacgttttggcctttcctttcattcactttttacattttatttcttacgtgtcccctttattatgta |
217 |
Q |
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| T |
36040237 |
ccaaccaccaaacacggctagcgctgatttgcctacgttttggcctttcctttcattcactttttacattttatttcttacgtgtcccctttattatgta |
36040336 |
T |
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| Q |
218 |
ctttgctatgccttttgtcattttctttaatttaaaactatttcatgtaacctttctttagataagagtcgttttattttctttgatgtttaagttaaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36040337 |
ctttgctatgccttttgtcattttctttaatttaaaactatttcatgtaaccttcctttagataagagtcgttttattttctttgatgtttaagttaaaa |
36040436 |
T |
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| Q |
318 |
aatagtattatcta |
331 |
Q |
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|||| ||||||||| |
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| T |
36040437 |
aatattattatcta |
36040450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 87 - 321
Target Start/End: Complemental strand, 49970 - 49737
Alignment:
| Q |
87 |
ccccatgaccatttaatgttgcaccgtgcatccaaccaccaaacacggctagcgctgatttgcctacgttttggcctttcctttcattcactttttacat |
186 |
Q |
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| T |
49970 |
ccccctgaccatttaatgttgcactctgcatccaactacaaaacattgcctgcgttgattagcccatgttttgtcctttcctttccttcacttgttacat |
49871 |
T |
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| Q |
187 |
tttatttcttacgtgtcccctttattatgtactttgctatgccttttgtcattttctttaatttaaaactatttcatgtaacctttctttagataagagt |
286 |
Q |
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| T |
49870 |
tttatttcttacatgtccactttat-atgtactttcttatttcttttgtcattttctttaattgaaaactatttaatgtagcctttctctggataagtgt |
49772 |
T |
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| Q |
287 |
cgttttattttctttgatgtttaagttaaataata |
321 |
Q |
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| T |
49771 |
agttttattttcttcgatatttaagttagataata |
49737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 92 - 319
Target Start/End: Original strand, 2860454 - 2860683
Alignment:
| Q |
92 |
tgaccatttaatgttgcaccgtgcatccaaccaccaaacacg-gctagcgctgatttgcctacgttttggcctttcctttcattcactttttacatttta |
190 |
Q |
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|||||||||||||||||||| | || ||||||||||||| || |||||| ||| ||| | |||||| ||||||||||| ||||||| |||| |||| |
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| T |
2860454 |
tgaccatttaatgttgcaccctccactcaaccaccaaacatttgccagcgcttattagcccatgttttgccctttcctttccttcacttgttacgttttc |
2860553 |
T |
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| Q |
191 |
tttcttacgtgtcccctttattatgtactttgctatgccttttg----tcattttctttaatttaaaactatttcatgtaacctttctttagataagagt |
286 |
Q |
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|||||||| ||||| |||||| ||||||| ||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2860554 |
tttcttacatgtccactttat---gtactttcttatatctttttgtcatcatcatctttaatttaaaactatttcatgtaacctttctttagataagtgt |
2860650 |
T |
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| Q |
287 |
cgttttattttctttgatgtttaagttaaataa |
319 |
Q |
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|||||||||||||||||| |||| |||| |||| |
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| T |
2860651 |
cgttttattttctttgatatttacgttagataa |
2860683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 43352875 - 43352944
Alignment:
| Q |
250 |
taaaactatttcatgtaacctttctttagataagagtcgttttattttctttgatgtttaagttaaataa |
319 |
Q |
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|||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||| |||| |
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| T |
43352875 |
taaaactatttcatgtaatttttctttagataagtgttgttttattttctttgatatttaagttagataa |
43352944 |
T |
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