View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15568_low_6 (Length: 246)
Name: NF15568_low_6
Description: NF15568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15568_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 35 - 227
Target Start/End: Original strand, 33777163 - 33777355
Alignment:
| Q |
35 |
catggctagtgttatgagaccaagatccagttttaatcaaggtcatgaagtgacaatcaatattgtgagtgttgttaatgtttataacatcatgggtgta |
134 |
Q |
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| T |
33777163 |
catggctagtgttatgagaccaagatccagttttaatcaaggtcatgaagtgacaatcaatattgtgagtgttgttaatgtttataacatcatgggtgta |
33777262 |
T |
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| Q |
135 |
gaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatcccactgcattt |
227 |
Q |
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| T |
33777263 |
gaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatcccactgcattt |
33777355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 97 - 227
Target Start/End: Original strand, 33774587 - 33774715
Alignment:
| Q |
97 |
ttgtgagtgttgttaatgtttataacatcatgggtgtagaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttca |
196 |
Q |
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| T |
33774587 |
ttgttagtgtagttaatgtttataacatcatgggagtagaaaccaatcattttcatggccttatggccttcattttc--tggactcattggtttccttca |
33774684 |
T |
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| Q |
197 |
aattagttatccagataatcccactgcattt |
227 |
Q |
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| T |
33774685 |
aattagttatccagataatcccactgcattt |
33774715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 54 - 227
Target Start/End: Complemental strand, 10657853 - 10657680
Alignment:
| Q |
54 |
ccaagatccagttttaatcaaggtcatgaagtgacaatcaatattgtgagtgttgttaatgtttataacatcatgggtgtagaaaccaatccttttcatg |
153 |
Q |
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| T |
10657853 |
ccaagatccacttttaatcaaggtcatgaggtgaccataaatgttgccagtgttgttaatgtttataacatcatgggagtagaaaccaatcctctccatg |
10657754 |
T |
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| Q |
154 |
gccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatcccactgcattt |
227 |
Q |
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| T |
10657753 |
gccttatgaccttccttttctttgtcctcattggtttccttcaaattagttatccaaataatcccactgcattt |
10657680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 71 - 227
Target Start/End: Complemental strand, 10707755 - 10707599
Alignment:
| Q |
71 |
tcaaggtcatgaagtgacaatcaatattgtgagtgttgttaatgtttataacatcatgggtgtagaaaccaatccttttcatggccttatggccttcatt |
170 |
Q |
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|||| ||||||||||||| || ||| |||| ||||||||||||||||| ||||||||||| ||||||||||| ||| | ||| ||||||||||||||||| |
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| T |
10707755 |
tcaaagtcatgaagtgaccataaatgttgtaagtgttgttaatgtttacaacatcatgggagtagaaaccaaccctctacatagccttatggccttcatt |
10707656 |
T |
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| Q |
171 |
ttctttgtactcattggtttccttcaaattagttatccagataatcccactgcattt |
227 |
Q |
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| T |
10707655 |
ttctttgtactccttgctttcctccaaattacttatccagataatcccactgcattt |
10707599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 217
Target Start/End: Complemental strand, 10634273 - 10634115
Alignment:
| Q |
56 |
aagatccagttttaatcaaggtcatgaagtgacaatcaatattgtgagtgttgttaatgtttataacatcatgggtgtagaaaccaatccttttcatggc |
155 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||| | | |||||||||||| || ||| || ||| ||||||| |||||||||||||| | |
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| T |
10634273 |
aagatcaagttttaatcaaggttctgaagtgacaatcaatatag---gagttgttaatgttcatgacaccaagggagtagaaaacaatccttttcatgtc |
10634177 |
T |
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| Q |
156 |
cttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatcc |
217 |
Q |
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| T |
10634176 |
cttatggccttcattttttttgtactcattggtttcctccaaattcgatatccagaaaatcc |
10634115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 10693896 - 10693803
Alignment:
| Q |
134 |
agaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatcccactgcattt |
227 |
Q |
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| T |
10693896 |
agaaaccaatcctcttcattgtcttatggccttcactttctttgtactccttggtttcctccaaatcagttatccagataaacccagtgcattt |
10693803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 10690564 - 10690467
Alignment:
| Q |
120 |
aacatcatgggtgtagaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatcc |
217 |
Q |
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| T |
10690564 |
aacatcatgggagtagaaactaatcctcaacatggccttgtagccttcattttctttgtactccttggtttcctccaagttagatatccagaaaatcc |
10690467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 148
Target Start/End: Complemental strand, 10694002 - 10693909
Alignment:
| Q |
55 |
caagatccagttttaatcaaggtcatgaagtgacaatcaatattgtgagtgttgttaatgtttataacatcatggg---tgtagaaaccaatccttt |
148 |
Q |
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| T |
10694002 |
caagatccaattttaatcgaagtcatgaagtgaccataaatgttgtgag---tgttaatgtttataacatcatgggagtagtagaaaccaatccttt |
10693909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 217
Target Start/End: Complemental strand, 10698499 - 10698400
Alignment:
| Q |
118 |
ataacatcatgggtgtagaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatcc |
217 |
Q |
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| T |
10698499 |
ataacatcatgggaatggaaactaatcctcaacatggccttgtagcctttattttctttgtactccttggtttcctccaaattagatacccagaaaatcc |
10698400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 220
Target Start/End: Original strand, 15240269 - 15240369
Alignment:
| Q |
120 |
aacatcatgggtgtagaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatccca |
219 |
Q |
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||||||||||| ||| ||||||| || ||||||| ||| ||||||||||||| | ||| || || ||||| || ||||| |||||||||||||||||| |
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| T |
15240269 |
aacatcatgggaatagcaaccaattctcttcatggtcttgtggccttcattttttatgtgcttataggttttctccaaatctgttatccagataatccca |
15240368 |
T |
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| Q |
220 |
c |
220 |
Q |
| |
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| T |
15240369 |
c |
15240369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 15246621 - 15246705
Alignment:
| Q |
134 |
agaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatcccac |
220 |
Q |
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| T |
15246621 |
agaaaccaatcctcttcatggccctgtggccttatttttttgtgtactcagaggtttcc--cgaattagctatccagataatcccac |
15246705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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