View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15568_low_8 (Length: 229)
Name: NF15568_low_8
Description: NF15568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15568_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 29021532 - 29021727
Alignment:
| Q |
17 |
ttattctaggacaagaaatgacagtaacttcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagag |
116 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29021532 |
ttattctaggacaaaaaatgacaataacttcttcgagaagcttacagttgtttataaagtggaaaagtgattggtcgttgatatagcaatgacgagagag |
29021631 |
T |
|
| Q |
117 |
aacaaccttgcggagtttaaaaagtgacaatgaaatagcctctaaaccatcgagtaagttactgcgatagttgatctctacaggataactaagatc |
212 |
Q |
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| T |
29021632 |
atcaaccttgcggagtttaaaaagtgacaatgaaatagcctctaaaccatcgagtaagttactgcgatagttgatctttacaggataactaagatc |
29021727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 28673590 - 28673399
Alignment:
| Q |
21 |
tctaggacaagaaatgacagtaacttcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagagaaca |
120 |
Q |
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|||| ||||||||| ||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||| |||||||| | |
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| T |
28673590 |
tctatgacaagaaaagactataacctcttcgagaagcttacagttgtttatcaaatggaaaagtgattggtcgttgatgtagtgatgatgagagagatta |
28673491 |
T |
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| Q |
121 |
accttgcggagtttaaaaagtgacaatgaaatagcctctaaaccatcgagtaagttactgcgatagttgatctctacaggataactaagatc |
212 |
Q |
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||||||| |||||| ||||||| ||||||||||||||| | ||||||| |||| ||||| | ||| ||| |||| | |||| ||||||||| |
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| T |
28673490 |
accttgcagagtttgaaaagtggcaatgaaatagcctcaacaccatcgtgtaaactactgtggtagatgaactctccgggatcactaagatc |
28673399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 28695840 - 28695681
Alignment:
| Q |
21 |
tctaggacaagaaatgacagtaacttcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagagaaca |
120 |
Q |
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|||| ||||||||| ||| |||| |||||||||||||| ||||||||||||||||||||||||| |||| ||||||| ||| ||||||||||||| | |
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| T |
28695840 |
tctatgacaagaaaagactataacctcttcgagaagcttgcagttgtttatcaagtggaaaagtggttggccgttgatgtagtgatgacgagagagatta |
28695741 |
T |
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| Q |
121 |
accttgcggagtttaaaaagtgacaatgaaatagcctctaaaccatcgagtaagttactg |
180 |
Q |
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||||||| |||||| ||||||| ||||||||||||||||| ||||||| ||||| ||||| |
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| T |
28695740 |
accttgcagagtttgaaaagtggcaatgaaatagcctctacaccatcgtgtaagctactg |
28695681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 28662815 - 28662717
Alignment:
| Q |
78 |
gaaaagtgattggtcgttgatatagcaatgacgagagagaac--aaccttgcggagtttaaaaagtgacaatgaaatagcctctaaaccatcgagtaag |
174 |
Q |
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||||||||||||||||||||| || ||||||||||||| |||||| | |||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
28662815 |
gaaaagtgattggtcgttgatgtattgatgacgagagagagattaaccttccagagtttgaaaagtgacaatgaaatagcatctaaaccatcgagtaag |
28662717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 28532571 - 28532626
Alignment:
| Q |
43 |
acttcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgat |
98 |
Q |
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||||||| |||||||||||||||| | | |||||||||||||||||||| |||||| |
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| T |
28532571 |
acttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgat |
28532626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 180
Target Start/End: Original strand, 532587 - 532718
Alignment:
| Q |
49 |
tcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagagaacaaccttgcggagtttaaaaagtgacaatg |
148 |
Q |
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|||||||||||||| || || | |||||||||||| |||||||||||||| ||| |||| ||| ||| ||||||||||||||| |||||||| |||| |
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| T |
532587 |
tcgagaagcttacaatttttgaacaagtggaaaagcgattggtcgttgatgtagtcatgagtagaaagattaaccttgcggagtttgaaaagtgataatg |
532686 |
T |
|
| Q |
149 |
aaatagcctctaaaccatcgagtaagttactg |
180 |
Q |
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||| || ||| | ||||| ||| ||| ||||| |
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| T |
532687 |
aaagagtctccacaccatggagaaagctactg |
532718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 158
Target Start/End: Complemental strand, 8186656 - 8186539
Alignment:
| Q |
41 |
taacttcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagagaacaaccttgcggagtttaaaaag |
140 |
Q |
| |
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|||| ||||||||| ||||||| || |||| |||||| ||||| ||| ||||||||||||| |||| ||| ||| ||||||||| ||||| ||||| |
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| T |
8186656 |
taacctcttcgagatgcttacaattctttaacaagtgaaaaagcaatttgtcgttgatatagttatgattagatagattaaccttgcgaagtttgaaaag |
8186557 |
T |
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| Q |
141 |
tgacaatgaaatagcctc |
158 |
Q |
| |
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|| |||||||| |||||| |
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| T |
8186556 |
tgccaatgaaagagcctc |
8186539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 142
Target Start/End: Complemental strand, 18314929 - 18314833
Alignment:
| Q |
46 |
tcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagagaacaaccttgcggagtttaaaaagtg |
142 |
Q |
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|||||||||||||||||||| || | |||||||||||| ||||| |||||||| ||| ||||| || || | |||||| |||||||| ||||||| |
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| T |
18314929 |
tcttcgagaagcttacagttcttgaacaagtggaaaagcgattgatcgttgatgtagtaatgatcagcgaaattaacctttcggagtttgaaaagtg |
18314833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 174
Target Start/End: Complemental strand, 18318935 - 18318807
Alignment:
| Q |
46 |
tcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagagaacaaccttgcggagtttaaaaagtgaca |
145 |
Q |
| |
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|||||||||||||| ||||| || | |||||||| ||| ||||| ||| |||||||| ||||| || |||| ||||||| |||||||| |||||| | |
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| T |
18318935 |
tcttcgagaagcttccagttcttgaacaagtggataagcgattgatcggtgatatagtgatgaccagtgagatcaacctttcggagtttggaaagtgcta |
18318836 |
T |
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| Q |
146 |
atgaaatagcctctaaaccatcgagtaag |
174 |
Q |
| |
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| |||| | |||||| |||||||||||| |
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| T |
18318835 |
aagaaagaacctctactccatcgagtaag |
18318807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 160
Target Start/End: Original strand, 32151732 - 32151846
Alignment:
| Q |
46 |
tcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagagaacaaccttgcggagtttaaaaagtgaca |
145 |
Q |
| |
|
|||||||||||||| |||||||| | |||||||||||| ||||| || || |||||| ||||| | |||| |||||| | ||||||| |||||| | |
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| T |
32151732 |
tcttcgagaagcttccagttgttgaacaagtggaaaagcgattgatctttaatatagtgatgacttgtgagattaaccttccagagtttataaagtgccg |
32151831 |
T |
|
| Q |
146 |
atgaaatagcctcta |
160 |
Q |
| |
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||||| |||||||| |
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| T |
32151832 |
ttgaaagagcctcta |
32151846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 142
Target Start/End: Complemental strand, 13469968 - 13469872
Alignment:
| Q |
43 |
acttcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagagaacaaccttgcggagtttaaaaagtg |
142 |
Q |
| |
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||||||||||||||||||||||||| | ||||||||||||||| ||| ||| ||||| || || ||| ||| ||||||||||||||||||||||| |
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| T |
13469968 |
acttcttcgagaagcttacagttgtggaataagtggaaaagtgataggttgtt--tataggaa-aactagaaagattaaccttgcggagtttaaaaagtg |
13469872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 9411886 - 9412005
Alignment:
| Q |
41 |
taacttcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagagaacaaccttgcggagtttaaaaag |
140 |
Q |
| |
|
|||| |||| ||||||||||||||| || | ||||| ||| |||||| ||||||||| ||| ||||| ||||||| || |||| |||||| ||||| |
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| T |
9411886 |
taacctcttggagaagcttacagttcttaaacaagttgaagagtgatgtgtcgttgatgtagtgatgaccagagagattaatcttggtgagtttgaaaag |
9411985 |
T |
|
| Q |
141 |
tgacaatgaaatagcctcta |
160 |
Q |
| |
|
|| |||||||| || ||||| |
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|
| T |
9411986 |
tgtcaatgaaagagtctcta |
9412005 |
T |
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