View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15569_high_3 (Length: 292)
Name: NF15569_high_3
Description: NF15569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15569_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 23 - 271
Target Start/End: Original strand, 43880494 - 43880742
Alignment:
| Q |
23 |
aaaagccagccaacaaaaaactaaactcctaaaggcaaccagtaatgaacagaagaggagctgatgcaggattatacaaaacaaccagctagaaaccaaa |
122 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43880494 |
aaaagccagccaacaaaaaactaaacacctaaaggcaaccagtaatgaacagaagaggagctgatgcaggataatacaaaacaaccagctagaaaccaaa |
43880593 |
T |
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| Q |
123 |
aaggaattcagcacacgcatacccctgcatcagtaccaaaatgcagctgcctacaccaatggaaacagaaaaacaagcctgcgaaaggaggggaaccgca |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43880594 |
aaggaattcagcacacgcatacccctgcatcagtaccaaaatgcagcagcctacaccaatggaaacagaaaaacaagcctgcgaaagggggggaaccgca |
43880693 |
T |
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| Q |
223 |
ccaaacagcagcaacagcagaacaacaactgctgcaagaacacagcagc |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43880694 |
ccaaacagcagcaacagcagaacaacaactgctgcaagcacacagcagc |
43880742 |
T |
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