View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15569_low_3 (Length: 305)
Name: NF15569_low_3
Description: NF15569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15569_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 36161685 - 36161982
Alignment:
| Q |
18 |
atttgatcgatacaaatccttcgatattaagaagtttcaagctaaatgtgttgaaatttggatccttgctgcaattggacacc------------tcatt |
105 |
Q |
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| T |
36161685 |
atttgatcgatacaaatccttcgatattaagaagtttcaagctaaatgtgttgaaatttggatccttgctgcaattggaccccaccttcaagaactcatt |
36161784 |
T |
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| Q |
106 |
ctctcaatttccggttattgtataaaactccctccttctttcttcatcaactgcacaaacctcgtttccctcaggttttccgg----at--atgctgctg |
199 |
Q |
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| T |
36161785 |
ctctcaatttccagttattgtataaaactccctccttctttcttcatcaactgcacaaacctcgtttccctcaggttttccggtgccatcgat-atgctg |
36161883 |
T |
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| Q |
200 |
gttcaagattactcggttcattttccatcactgaagaagctctctctctcggcgcagacattgtgtg-----cacagattcattacttttctttctctct |
294 |
Q |
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| T |
36161884 |
gttcaagattactcggttcattttccatcactgaagaag--ctctctctcggcgcagacattgtgtgcacgccacagattcattacttttctttctctct |
36161981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 30077126 - 30077173
Alignment:
| Q |
130 |
aaactccctccttctttcttcatcaactgcacaaacctcgtttccctc |
177 |
Q |
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| T |
30077126 |
aaactccctccttccctcttcatcaactgcaacaacctcgtttccctc |
30077173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 25923102 - 25923155
Alignment:
| Q |
128 |
taaaactccctccttctttcttcatcaactgcacaaacctcgtttccctcaggt |
181 |
Q |
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| T |
25923102 |
taaaactctctccttctttattcatgaactgcagcaacctcgtttccctaaggt |
25923155 |
T |
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