View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15569_low_5 (Length: 268)

Name: NF15569_low_5
Description: NF15569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15569_low_5
NF15569_low_5
[»] chr4 (25 HSPs)
chr4 (14-163)||(45365283-45365432)
chr4 (29-264)||(45384108-45384362)
chr4 (171-268)||(45365599-45365696)
chr4 (195-266)||(7237153-7237223)
chr4 (192-262)||(48871151-48871221)
chr4 (192-262)||(48876455-48876525)
chr4 (192-262)||(48886837-48886907)
chr4 (195-266)||(7801224-7801295)
chr4 (195-266)||(7823556-7823627)
chr4 (193-266)||(7908883-7908957)
chr4 (198-266)||(7771976-7772044)
chr4 (198-266)||(7790661-7790729)
chr4 (195-267)||(48147116-48147188)
chr4 (192-264)||(48155823-48155895)
chr4 (204-264)||(48863848-48863908)
chr4 (195-266)||(7814064-7814135)
chr4 (196-265)||(45371475-45371544)
chr4 (192-266)||(37826393-37826467)
chr4 (192-262)||(49040558-49040628)
chr4 (195-264)||(7787083-7787152)
chr4 (19-89)||(48899530-48899601)
chr4 (19-72)||(7772976-7773029)
chr4 (194-266)||(7905159-7905232)
chr4 (191-262)||(48899334-48899402)
chr4 (192-265)||(50669670-50669743)
[»] chr5 (3 HSPs)
chr5 (185-262)||(9120354-9120431)
chr5 (195-265)||(29688714-29688787)
chr5 (88-132)||(29688858-29688902)
[»] chr8 (5 HSPs)
chr8 (192-267)||(4030188-4030263)
chr8 (195-265)||(15349477-15349547)
chr8 (32-87)||(4961746-4961801)
chr8 (232-268)||(12195903-12195939)
chr8 (232-268)||(12440331-12440367)
[»] chr2 (2 HSPs)
chr2 (192-266)||(29351009-29351083)
chr2 (205-268)||(21426988-21427051)
[»] chr1 (4 HSPs)
chr1 (192-265)||(24340999-24341072)
chr1 (192-265)||(24353364-24353437)
chr1 (19-99)||(24381841-24381923)
chr1 (192-264)||(24310802-24310874)
[»] chr6 (1 HSPs)
chr6 (198-264)||(21016410-21016476)
[»] chr3 (2 HSPs)
chr3 (215-265)||(47451323-47451373)
chr3 (192-265)||(11023906-11023979)
[»] chr7 (1 HSPs)
chr7 (192-236)||(48884460-48884504)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 14 - 163
Target Start/End: Original strand, 45365283 - 45365432
Alignment:
Q  14 agatatcaatgtttccaataagcatattacaaattgttaaccaataaacattgcatgacatgttcgatcagctcattacaaatgcaatcaaacacgtatt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45365283 agatatcaatgtttccaataagcatattacaaattgttaaccaataaacattgcatgacatgttcgatcagctcattacaaatacaatcaaacacgtatt 45365382  T
Q  114 aacctacaaatgcatccacccaaagtacaatataaaatatcattataaat 163  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45365383 aacctacaaatgcatccacccaaagtacaaaataaaatatcattataaat 45365432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 45384108 - 45384362
Alignment:
Q  29 caataagcatattacaaattgttaaccaataaacattgcatgacatgttcgatcagctcat-------------------tacaaatgcaatcaaacacg 109  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||                   |||||||||| ||||||| |    
T  45384108 caataagcatattacaaattgttaaccaatagacattgcatgacatgttcgatcagctcatgtggcatattggctcatgttacaaatgcagtcaaacatg 45384207  T
Q  110 tattaacctacaaatgcatccacccaaagtacaatataaaatatcattataaatctcaaataaaggtgaaggaatctcattcttcttcttgtttgtgtca 209  Q
     ||||  ||||||||||| |||||||||||||| |||| ||||||||||||||| ||||  ||||||||||||| |||||||||||||||||||||||||    
T  45384208 cattagtctacaaatgcagccacccaaagtacattatacaatatcattataaatatcaagaaaaggtgaaggaacctcattcttcttcttgtttgtgtca 45384307  T
Q  210 tcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtataca 264  Q
    |||||||||||||||||||||||||||| |||||| || ||||||||||||||||    
T  45384308 tcttcttaagcttgctcattgtcaccagaaagtgaaaggagagactctgtataca 45384362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 171 - 268
Target Start/End: Original strand, 45365599 - 45365696
Alignment:
Q  171 aaaggtgaaggaatctcattcttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtatacatggc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  45365599 aaaggtgaaggaatctcattcttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcaaagactctgtatacatggc 45365696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 7237153 - 7237223
Alignment:
Q  195 ttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtatacatg 266  Q
    ||||||||||||||||||| |||||| ||||||||||||||| | ||||| |||||||||||||||||||||    
T  7237153 ttcttgtttgtgtcatctt-ttaagcatgctcattgtcaccaaggagtgaaagcagagactctgtatacatg 7237223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 192 - 262
Target Start/End: Complemental strand, 48871221 - 48871151
Alignment:
Q  192 ttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtata 262  Q
    |||||||||||||||||| |||||||| | ||||||||||||||||| ||||| |||| ||||||||||||    
T  48871221 ttcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagcaaagactctgtata 48871151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 192 - 262
Target Start/End: Complemental strand, 48876525 - 48876455
Alignment:
Q  192 ttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtata 262  Q
    |||||||||||||||||| |||||||| | ||||||||||||||||| ||||| |||| ||||||||||||    
T  48876525 ttcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagcaaagactctgtata 48876455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 192 - 262
Target Start/End: Complemental strand, 48886907 - 48886837
Alignment:
Q  192 ttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtata 262  Q
    |||||||||||||||||| |||||||| | ||||||||||||||||| ||||| |||| ||||||||||||    
T  48886907 ttcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagcaaagactctgtata 48886837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 7801295 - 7801224
Alignment:
Q  195 ttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtatacatg 266  Q
    ||||||||| |||||||||||||| ||| ||||||||| ||||| ||||| ||||||||||| |||||||||    
T  7801295 ttcttgtttttgtcatcttcttaaacttactcattgtccccagggagtgaaagcagagactcggtatacatg 7801224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 7823627 - 7823556
Alignment:
Q  195 ttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtatacatg 266  Q
    ||||||||| |||||||||||||| ||| ||||||||| ||||| ||||| ||||||||||| |||||||||    
T  7823627 ttcttgtttttgtcatcttcttaaacttactcattgtccccagggagtgaaagcagagactcggtatacatg 7823556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 266
Target Start/End: Complemental strand, 7908957 - 7908883
Alignment:
Q  193 tcttcttgtttgtgtcatctt-cttaagcttgctcattgtcaccaggaagtgacagcagagactctgtatacatg 266  Q
    |||||||| |||||| ||||| ||||| ||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  7908957 tcttcttgattgtgtgatctttcttaaacttgctcattgtcaccagggagtgaaagcagagactcggtatacatg 7908883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 7772044 - 7771976
Alignment:
Q  198 ttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtatacatg 266  Q
    ||||||||| ||||||||||| | ||||||||||||||| | ||||| |||||||| ||||||||||||    
T  7772044 ttgtttgtgacatcttcttaatcatgctcattgtcaccaagtagtgaaagcagagattctgtatacatg 7771976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 7790729 - 7790661
Alignment:
Q  198 ttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtatacatg 266  Q
    ||||||||| ||||||||||| | ||||||||||||||| | ||||| |||||||| ||||||||||||    
T  7790729 ttgtttgtgacatcttcttaatcatgctcattgtcaccaagtagtgaaagcagagattctgtatacatg 7790661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 267
Target Start/End: Original strand, 48147116 - 48147188
Alignment:
Q  195 ttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtatacatgg 267  Q
    ||||||||||||||||||||||| | | || ||||||||| ||| ||||| ||||||||||| ||||||||||    
T  48147116 ttcttgtttgtgtcatcttcttagggtagcacattgtcactagggagtgaaagcagagactcagtatacatgg 48147188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 48155823 - 48155895
Alignment:
Q  192 ttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtataca 264  Q
    |||||||||||||||   |||||||| |||||| ||||||||||||| ||||| |||| ||||||||||||||    
T  48155823 ttcttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagggagtgaaagcaaagactctgtataca 48155895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 48863908 - 48863848
Alignment:
Q  204 gtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtataca 264  Q
    |||||||||||||||||||||||| |||||  ||| ||||| |||||||||||||||||||    
T  48863908 gtgtcatcttcttaagcttgctcactgtcattagggagtgaaagcagagactctgtataca 48863848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 7814135 - 7814064
Alignment:
Q  195 ttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtatacatg 266  Q
    ||||| ||| |||||||||||||| ||| ||||||||| ||||| ||||| ||||||||||| |||||||||    
T  7814135 ttcttttttttgtcatcttcttaaacttactcattgtccccagggagtgaaagcagagactcggtatacatg 7814064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 45371475 - 45371544
Alignment:
Q  196 tcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtatacat 265  Q
    |||||| |||| |||||||||||||||| |||||||| | ||  ||||| ||||||||||||||||||||    
T  45371475 tcttgtctgtgccatcttcttaagcttgatcattgtcgctagagagtgaaagcagagactctgtatacat 45371544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 266
Target Start/End: Original strand, 37826393 - 37826467
Alignment:
Q  192 ttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtatacatg 266  Q
    |||||||||||||| |||||||||||| |||||||   |||| |||| | ||| ||||||||||| |||||||||    
T  37826393 ttcttcttgtttgtatcatcttcttaaacttgctctccgtcaacagggaatgaaagcagagactccgtatacatg 37826467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 262
Target Start/End: Original strand, 49040558 - 49040628
Alignment:
Q  192 ttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtata 262  Q
    ||||||||||||||| |||||||||||||||||| | |||||   || ||||| ||||||||||| |||||    
T  49040558 ttcttcttgtttgtgccatcttcttaagcttgctaactgtcattggggagtgaaagcagagactccgtata 49040628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 264
Target Start/End: Complemental strand, 7787152 - 7787083
Alignment:
Q  195 ttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtataca 264  Q
    ||||||| |||||||||||||||| | ||||||| |||||| |  ||||| || ||||||||||||||||    
T  7787152 ttcttgtctgtgtcatcttcttaaacatgctcatcgtcaccggagagtgaaagtagagactctgtataca 7787083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 48899601 - 48899530
Alignment:
Q  19 tcaatgtttccaataagcatattacaaatt-gttaaccaataaacattgcatgacatgttcgatcagctcat 89  Q
    ||||| ||||||||||||||||| |||| | || || ||||||||||| |||||||| || |||||||||||    
T  48899601 tcaatatttccaataagcatattgcaaaatagtgaaacaataaacatttcatgacatattggatcagctcat 48899530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 7772976 - 7773029
Alignment:
Q  19 tcaatgtttccaataagcatattacaaattgttaaccaataaacattgcatgac 72  Q
    ||||| |||||||||||| ||| ||||||  |||||||||||||||| ||||||    
T  7772976 tcaatatttccaataagcctatgacaaataattaaccaataaacattccatgac 7773029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 7905232 - 7905159
Alignment:
Q  194 cttcttgtttgtgtcatctt-cttaagcttgctcattgtcaccaggaagtgacagcagagactctgtatacatg 266  Q
    |||||||||||||  ||||| ||||| ||||||| || ||||| || ||||| ||||||||||| |||||||||    
T  7905232 cttcttgtttgtgcgatctttcttaaacttgctcgttatcaccggggagtgaaagcagagactccgtatacatg 7905159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 48899402 - 48899334
Alignment:
Q  191 cttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtata 262  Q
    ||||||||||||| |||||||||| || || |||| |||||||||   |||||| |||||||||| ||||||    
T  48899402 cttcttcttgtttatgtcatcttcctatgcctgctaattgtcacc---aagtgaaagcagagactttgtata 48899334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 265
Target Start/End: Complemental strand, 50669743 - 50669670
Alignment:
Q  192 ttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtatacat 265  Q
    |||||||||||||||||||||| || | |||| |||| | || | || ||||| || |||||||||||||||||    
T  50669743 ttcttcttgtttgtgtcatctttttgaacttgttcatggacagcggggagtgaaagtagagactctgtatacat 50669670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 9120431 - 9120354
Alignment:
Q  185 ctcattcttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtata 262  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||| |||||||||||||||||    
T  9120431 ctcattcttcttcttgtttgtgtcatctccttaagcttgttcattgtcaccagggagtgaaagcagagactctgtata 9120354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 265
Target Start/End: Complemental strand, 29688787 - 29688714
Alignment:
Q  195 ttcttgtttgtgtcatcttcttaagcttgctcattgtcacca---ggaagtgacagcagagactctgtatacat 265  Q
    ||||||| || ||||||||||||||| || ||| ||||||||   |||||||| |||||||| |||||||||||    
T  29688787 ttcttgtctgcgtcatcttcttaagcctgatcactgtcaccaccaggaagtgaaagcagagattctgtatacat 29688714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 29688902 - 29688858
Alignment:
Q  88 attacaaatgcaatcaaacacgtattaacctacaaatgcatccac 132  Q
    ||||||||||||||||||||| ||||| ||||| |||||| ||||    
T  29688902 attacaaatgcaatcaaacacatattaccctacgaatgcagccac 29688858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 4030188 - 4030263
Alignment:
Q  192 ttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtatacatgg 267  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||||||    
T  4030188 ttcttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaagcagagactctgtgtacatgg 4030263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 265
Target Start/End: Complemental strand, 15349547 - 15349477
Alignment:
Q  195 ttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtatacat 265  Q
    |||||||||| ||| || |||||||| |||||||| |||||||| ||||| ||||||||||||||||||||    
T  15349547 ttcttgtttgcgtcgtcctcttaagcctgctcattatcaccagggagtgaaagcagagactctgtatacat 15349477  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 4961746 - 4961801
Alignment:
Q  32 taagcatattacaaattgttaaccaataaacattgcatgacatgttcgatcagctc 87  Q
    |||||||||||| ||| ||||||||||||||||| |||||||| |  |||||||||    
T  4961746 taagcatattacgaatagttaaccaataaacatttcatgacatatcagatcagctc 4961801  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 12195939 - 12195903
Alignment:
Q  232 caccaggaagtgacagcagagactctgtatacatggc 268  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  12195939 caccagggagtgaaagcagagactctgtatacatggc 12195903  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 12440367 - 12440331
Alignment:
Q  232 caccaggaagtgacagcagagactctgtatacatggc 268  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  12440367 caccagggagtgaaagcagagactctgtatacatggc 12440331  T

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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 192 - 266
Target Start/End: Complemental strand, 29351083 - 29351009
Alignment:
Q  192 ttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtatacatg 266  Q
    ||||||||||||| |||||||||||||||||||||||||||||| || ||||| |||| ||||||| | ||||||    
T  29351083 ttcttcttgtttgagtcatcttcttaagcttgctcattgtcaccggggagtgaaagcatagactctctgtacatg 29351009  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 268
Target Start/End: Complemental strand, 21427051 - 21426988
Alignment:
Q  205 tgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtatacatggc 268  Q
    ||||||||||||||||||| ||| || | | ||| ||||| |||| ||||||||||||||||||    
T  21427051 tgtcatcttcttaagcttgatcaatgccgctagggagtgaaagcatagactctgtatacatggc 21426988  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 265
Target Start/End: Complemental strand, 24341072 - 24340999
Alignment:
Q  192 ttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtatacat 265  Q
    ||||||||||||||| ||||||||||||||| ||||||||||| ||| ||||| |||| |||||| ||||||||    
T  24341072 ttcttcttgtttgtgccatcttcttaagcttcctcattgtcactagggagtgaaagcaaagactccgtatacat 24340999  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 265
Target Start/End: Complemental strand, 24353437 - 24353364
Alignment:
Q  192 ttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtatacat 265  Q
    ||||||||||||||| ||||||||||||||| ||||||||||| ||| ||||| |||| |||||| ||||||||    
T  24353437 ttcttcttgtttgtgccatcttcttaagcttcctcattgtcactagggagtgaaagcaaagactccgtatacat 24353364  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 24381923 - 24381841
Alignment:
Q  19 tcaatgtttccaataagcatattacaaattgttaaccaataaacattgcatgacatgttcgatcagctca--ttacaaatgca 99  Q
    ||||| |||||||||| ||| |||||||| ||||||||||||||||| ||||||||||| |||||| |||  |||||||||||    
T  24381923 tcaatatttccaataaacatgttacaaatagttaaccaataaacatttcatgacatgttggatcagttcatgttacaaatgca 24381841  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 264
Target Start/End: Complemental strand, 24310874 - 24310802
Alignment:
Q  192 ttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtataca 264  Q
    ||||||||||||||| ||| |||||||||||||||| ||||||  || |  || |||||||||||||||||||    
T  24310874 ttcttcttgtttgtgccattttcttaagcttgctcaatgtcactgggcaacgaaagcagagactctgtataca 24310802  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 264
Target Start/End: Complemental strand, 21016476 - 21016410
Alignment:
Q  198 ttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtataca 264  Q
    ||||||||||||||||||||| |||| || |||||| |||| ||||| |||| ||||||||||||||    
T  21016476 ttgtttgtgtcatcttcttaatcttggtcgttgtcatcagggagtgaaagcaaagactctgtataca 21016410  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 265
Target Start/End: Original strand, 47451323 - 47451373
Alignment:
Q  215 ttaagcttgctcattgtcaccaggaagtgacagcagagactctgtatacat 265  Q
    ||||||||||||||||||||| |||||||| |||||||||||||| |||||    
T  47451323 ttaagcttgctcattgtcaccgggaagtgaaagcagagactctgtgtacat 47451373  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 265
Target Start/End: Original strand, 11023906 - 11023979
Alignment:
Q  192 ttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcagagactctgtatacat 265  Q
    |||||||| | |||||||||||||||   ||| ||| ||||||| || ||||| ||||| ||||||||||||||    
T  11023906 ttcttcttctgtgtgtcatcttcttagatttgttcactgtcaccggggagtgaaagcagggactctgtatacat 11023979  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 48884504 - 48884460
Alignment:
Q  192 ttcttcttgtttgtgtcatcttcttaagcttgctcattgtcacca 236  Q
    ||||||||||||||||||| ||||||| ||| |||||||||||||    
T  48884504 ttcttcttgtttgtgtcattttcttaaactttctcattgtcacca 48884460  T

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