View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1556R-Insertion-1 (Length: 1005)
Name: NF1556R-Insertion-1
Description: NF1556R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1556R-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 9 - 451
Target Start/End: Original strand, 48016347 - 48016789
Alignment:
| Q |
9 |
tgtctttgcctcgaaaacttaggaacacttcattaatccttaattctttcgaggcattcttcattgatgtgtgatcattccaaaatgattgtgcagattg |
108 |
Q |
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| T |
48016347 |
tgtctttgcctcgaaaacttaggaacacttcattaatccttaattctttcgaggcattcttcattgatgtgtgatcattccaaaatgattgtgcagattg |
48016446 |
T |
|
| Q |
109 |
ggggaagttaatgaaggaagacatggatggatgagattagagaagcaatgttacttgctccgatgtgcagtttttgtttgtggcggtcaacgtaacatgt |
208 |
Q |
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| T |
48016447 |
ggggaagttaatgaaggaagacatggatggatgagataagagaagcaatgttgcttgctccgatgtgcagtttttgtttgtggcggtcaacgtaacatgt |
48016546 |
T |
|
| Q |
209 |
tccttcaatgtcacttcatggcttgtttaaatttgtaatcattgtttccatgactacaaaatttatacataattaaatgccaatctggattgacttagtc |
308 |
Q |
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| T |
48016547 |
tccttcaatgtcacttcatggcttgtttaaatttgtaatcattgtttccatgactacaaaatttatacataattaaatgctaatctggattgacatagtc |
48016646 |
T |
|
| Q |
309 |
tttttaaagctgttggctgacgagtgcaatgagaaaatcaccagcaactttatgtgttccttccatgtacatttataaatttcctagaatttattgagtg |
408 |
Q |
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| T |
48016647 |
tttttaaagctgttggctgacgagtgcaatgagaaaatcaccatcaactttatgtgttccttccatgtacatttataaatttcctagaatttattgagtg |
48016746 |
T |
|
| Q |
409 |
ttgtgaagaagaatatgaatcttaacttaaattatataggcta |
451 |
Q |
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| T |
48016747 |
ttgtgaagaagaatatgaatcttaacttaaattatataggcta |
48016789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 535 - 753
Target Start/End: Original strand, 48016875 - 48017093
Alignment:
| Q |
535 |
agtgagaaacatgtaattaattcataattgttttacaagttagctcatctcacgtcaggattggatagaaaacaaagttgtataatgnnnnnnnnaacga |
634 |
Q |
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| T |
48016875 |
agtgagaaacatgtaattaattcataattgttttacaagttagctcatctcacgtcaggattggatagaaaacaaagttgtataatattttttttaacga |
48016974 |
T |
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| Q |
635 |
tgaataaatagtttagatgagtatgaatcggatctttgacatcacggttagaatagacgtcaagactcaataaacaattacataattacttacgaataat |
734 |
Q |
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| T |
48016975 |
tgaataaatagtttagatgagtatgaatcagatctttgacatcacggttagaatagacgtgaagactcaataaacaattacataattacttacgaataat |
48017074 |
T |
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| Q |
735 |
ttaccaaaagttatttaca |
753 |
Q |
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| T |
48017075 |
ttaccaaaagttatttaca |
48017093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 801 - 896
Target Start/End: Original strand, 48017093 - 48017192
Alignment:
| Q |
801 |
atcatttcaattgcaaggactaaaataa-ttaataagtagatattnnnnnnngtgacataatgag-agc-agaatggtacc-agtgtgctgggaaagaca |
896 |
Q |
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| T |
48017093 |
atcatttcaattgcaaggactaaaataatttaataagtagatattaaaaaaagtgacataatgagaagcaagaatggtaccaagtgtgctgggaaagaca |
48017192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 278
Target Start/End: Original strand, 5166586 - 5166674
Alignment:
| Q |
191 |
gcggtcaacgtaacat--gttccttcaatgtcacttcatggcttgtttaaatttgtaatcattgtttccatgactacaaaatttatacat |
278 |
Q |
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| T |
5166586 |
gcggtcaacgtaacatatgtttcttccttgtcacttcatggcttgttttgattta-aatcattctttccataacgacaaaatttatacat |
5166674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 285
Target Start/End: Complemental strand, 5268799 - 5268723
Alignment:
| Q |
208 |
ttccttcaatgtcacttcatggcttgtttaaatttgtaatcattgtttccatgactacaaaatttatacataattaaa |
285 |
Q |
| |
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||||||| ||||| |||||||||||||| |||| |||| ||||||||||| || |||| ||||||||||||||||| |
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| T |
5268799 |
ttccttccttgtcagttcatggcttgtttggattt-taattattgtttccatcacgacaatatttatacataattaaa |
5268723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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