View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1556R-Insertion-10 (Length: 530)

Name: NF1556R-Insertion-10
Description: NF1556R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1556R-Insertion-10
NF1556R-Insertion-10
[»] chr4 (4 HSPs)
chr4 (150-530)||(55573503-55573883)
chr4 (267-406)||(33035731-33035869)
chr4 (9-103)||(55573930-55574024)
chr4 (460-530)||(1360022-1360092)
[»] chr6 (1 HSPs)
chr6 (156-231)||(20809076-20809151)
[»] chr2 (2 HSPs)
chr2 (153-218)||(16560792-16560857)
chr2 (191-231)||(6527418-6527458)
[»] chr1 (1 HSPs)
chr1 (174-231)||(10313839-10313896)


Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 150 - 530
Target Start/End: Complemental strand, 55573883 - 55573503
Alignment:
Q  150 cgtatatgtttatctttatctctttgttactttttatctcttacaacttacgtgaatttaaaaaatacacata----aaaaccaaaagatgtcgtatttg 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||    
T  55573883 cgtatatgtttatctttatctctttgttactttttatctcttacaacttacgtgaatttaaaaaatacacatacataaaaaccaaaagatgtcgtatttg 55573784  T
Q  246 atgtcaaaatatcatttcttcaaaataaggaaccttgtgatttcctgtgaaatccaaaccaacacaagaaaataaaccaaaaaagagtattatgacaaga 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  55573783 atgtcaaaatatcatttcttcaaaataaggaaccttgtgatttcctgtgaaatctaaaccaacacaagaaaataaaccaaaaaagagtattatgacaaga 55573684  T
Q  346 agtggacacaggaattaattaattaattaaacctttctgagataaaaatagttaattaattacctgcactatgttaggatgaaagagacgtgagagtaaa 445  Q
    ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55573683 agtggacacaggaattaattaattaa----acctttctgagataaaaatagttaattaattacctgcactatgttaggatgaaagagacgtgagagtaaa 55573588  T
Q  446 gcaacttcagacttgaattgctgttctagcaatgttcttctctcctcattctgagtaggaatcctcaccattttaacagcaacag 530  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55573587 gcaacttcagacttgaattgctgttctagcaatgttcttctctcctcattctgagtaggaatcctcaccattttaacagcaacag 55573503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 267 - 406
Target Start/End: Complemental strand, 33035869 - 33035731
Alignment:
Q  267 aaaataaggaaccttgtgatttcctgtgaaatccaaaccaacacaagaaaataaaccaaaaaagagtattatgacaagaagtggacacaggaattaatta 366  Q
    |||||||||||||| |||||||||| |||||||||||||||||||| |||||||| ||||||||| ||||| ||||||||||||||||| ||||| ||||    
T  33035869 aaaataaggaacctcgtgatttcctttgaaatccaaaccaacacaataaaataaaacaaaaaagactattaggacaagaagtggacacaagaattcatta 33035770  T
Q  367 attaattaaacctttctgagataaaaatagttaattaatt 406  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  33035769 attaattaaacctttctgagat-aaaatagttaattaatt 33035731  T

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Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 55574024 - 55573930
Alignment:
Q  9 gcatccgtaaaaacatgacacaaaagtaaagaaatttgacatcaagttggtattaaattttcccccactaaagtggtaagtggttgtgagtcttt 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55574024 gcatccgtaaaaacatgacacaaaagtaaagaaatttgacatcaagttggtattaaattttcccccactaaagtggtaagtggttgtgagtcttt 55573930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 460 - 530
Target Start/End: Complemental strand, 1360092 - 1360022
Alignment:
Q  460 gaattgctgttctagcaatgttcttctctcctcattctgagtaggaatcctcaccattttaacagcaacag 530  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1360092 gaattgttgttctagcaatgttcttctctcctcattctgagttggaatcctcaccattttaacagcaacag 1360022  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 20809151 - 20809076
Alignment:
Q  156 tgtttatctttatctctttgttactttttatctcttacaacttacgtgaatttaaaaaatacacataaaaaccaaa 231  Q
    |||| |||| ||||||| | ||||||||||||| ||||||| |||    |||||||||||||||| ||||||||||    
T  20809151 tgttcatctctatctctctcttactttttatcttttacaacatacacacatttaaaaaatacacacaaaaaccaaa 20809076  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 16560792 - 16560857
Alignment:
Q  153 atatgtttatctttatctctttgttactttttatctcttacaacttacgtgaatttaaaaaataca 218  Q
    |||| ||||||||||||||| | ||||||||||||   |||||||||  ||| |||||||||||||    
T  16560792 atatatttatctttatctctcttttactttttatcatatacaacttatatgagtttaaaaaataca 16560857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 6527418 - 6527458
Alignment:
Q  191 tacaacttacgtgaatttaaaaaatacacataaaaaccaaa 231  Q
    |||||||| | || |||||||||||||||||||||||||||    
T  6527418 tacaacttgcatgcatttaaaaaatacacataaaaaccaaa 6527458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 10313839 - 10313896
Alignment:
Q  174 tgttactttttatctcttacaacttacgtgaatttaaaaaatacacataaaaaccaaa 231  Q
    |||||||||||||||  |||||||||| ||||||| |||| |||||| ||||| ||||    
T  10313839 tgttactttttatcttgtacaacttacatgaatttcaaaattacacacaaaaatcaaa 10313896  T

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