View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1556R-Insertion-11 (Length: 525)
Name: NF1556R-Insertion-11
Description: NF1556R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1556R-Insertion-11 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 480; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 9 - 525
Target Start/End: Original strand, 28402790 - 28403310
Alignment:
| Q |
9 |
attataccataaacaacaatcagaactcttcattaataatgttgcatagaaacatataaataagggacatacatcaaccatgaaattaaatgcaatttct |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28402790 |
attataccataaacaacaatcagaactcttcattaataatgttgcatagaaacatataaataagggacatacatcaaccatgaaattaaatgcaatatct |
28402889 |
T |
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| Q |
109 |
tctgtacaatatatatgataaaaatagccatgtagaaagtaaacaacaaatcaaattggttcatagttttctgttttgagtcccttgtagaaagagcgct |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28402890 |
tctgtacaatatatatgataaaaatagccatgtagaaagtaaacaacaaatcaaattggttcatagttttctgttttgagtcctttgtagaaagagcgct |
28402989 |
T |
|
| Q |
209 |
tgtcaaatacatagaacttattgacacatttcgtaaaagaaaaactttacacattttcaaaaactttacaaacatgcttgagtttagttagcacttaagc |
308 |
Q |
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||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28402990 |
tgtcaaatacagagaacttattgacacgtttcgtaaaagaaaaactttacacattttcaaaaactttacaaacatgcttgagtttagttagcacttaagc |
28403089 |
T |
|
| Q |
309 |
taaatattttgccaaaaaagaaagtaattcatctaggcaagtagtta----atttattaaataattagataaatgttacattgacaacgtaatatagttt |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28403090 |
taaatattttgccaaaaaagaaagtaattcatctaggcaagtagttaatttatttattaaataattagataaatgttacattaacaacgtaatatagttt |
28403189 |
T |
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| Q |
405 |
tcttttttaaggacaacgcaatatagttgaaaataatgcaaaacatgtgtaacaaatgaaggaaaaacaaatcaaagtagttaaaccaatttgaatcttc |
504 |
Q |
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| T |
28403190 |
tcttttttaaggacaacgcaatatagttgaaaataatgcaaaacatgtgtaacaaattaaggaaaaacaaatcaaagtagttaaaccaatttgaatcttc |
28403289 |
T |
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| Q |
505 |
ttcaagaatatctctgaatct |
525 |
Q |
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| T |
28403290 |
ttcaagaatatctctgaatct |
28403310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 151 - 288
Target Start/End: Original strand, 19375049 - 19375190
Alignment:
| Q |
151 |
acaacaaatcaaattggttcatagttttctgttttgagtcccttgtagaaagagcgcttgtcaaatacatagaacttattgacacatttcgtaaaagaaa |
250 |
Q |
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| T |
19375049 |
acaacaaatccaattggttcataattttctggtttaagttccttatagaaagagtccttgtcaaatgcatagaatttgttgacacatttagtaaaaaaaa |
19375148 |
T |
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| Q |
251 |
aa----ctttacacattttcaaaaactttacaaacatgcttg |
288 |
Q |
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|| |||||||||||||||||||||||||||||||||||| |
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| T |
19375149 |
aatcttctttacacattttcaaaaactttacaaacatgcttg |
19375190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 153
Target Start/End: Original strand, 19374953 - 19375013
Alignment:
| Q |
91 |
aaattaaatgcaatttcttctgtacaatatatatgataaaaatagccatgtagaaagtaaaca |
153 |
Q |
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| T |
19374953 |
aaattaaatgcaatttcctaagtacagtata--tgataaaaatagccctgtagaaagtaaaca |
19375013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 400
Target Start/End: Complemental strand, 32835538 - 32835438
Alignment:
| Q |
300 |
cacttaagctaaatattttgccaaaaaagaaagtaattcatctaggcaagtagttaatttattaaataattagataaatgttacattgacaacgtaatat |
399 |
Q |
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|||||||||| |||||||||||||||||||||| |||||| |||| ||| |||||| |||||||||||||||| |||| |||| ||| |||||| ||||| |
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| T |
32835538 |
cacttaagcttaatattttgccaaaaaagaaagcaattcagctagacaaatagttactttattaaataattagctaaaagttaaattaacaacgcaatat |
32835439 |
T |
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| Q |
400 |
a |
400 |
Q |
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| T |
32835438 |
a |
32835438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 32842183 - 32842095
Alignment:
| Q |
19 |
aaacaacaatcagaactcttcattaataatgttgcatagaaacatataaataagggacatacatcaaccatgaaattaaatgcaatttc |
107 |
Q |
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||||||||||||| || | | ||||||||||||||| ||||||||| |||| ||||| |||||||||| ||||||| |||||||||||| |
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| T |
32842183 |
aaacaacaatcagcacacataattaataatgttgcacagaaacatacaaatcagggatatacatcaacaatgaaatcaaatgcaatttc |
32842095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 32836057 - 32835969
Alignment:
| Q |
19 |
aaacaacaatcagaactcttcattaataatgttgcatagaaacatataaataagggacatacatcaaccatgaaattaaatgcaatttc |
107 |
Q |
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||||||||||||| || | ||||||||||||||| ||||||||| |||| ||||| |||||||||| ||||||| |||||||||||| |
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| T |
32836057 |
aaacaacaatcagcacacaaaattaataatgttgcacagaaacatacaaatcagggatatacatcaacaatgaaatcaaatgcaatttc |
32835969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 32835615 - 32835548
Alignment:
| Q |
151 |
acaacaaatcaaattggttcatagttttctgttttgagtcccttgtagaaagagcgcttgtcaaatac |
218 |
Q |
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||||||||||||||||||| ||| || |||||||||||||||||| ||||||||| ||||||| |||| |
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| T |
32835615 |
acaacaaatcaaattggttaataattgtctgttttgagtcccttggagaaagagcccttgtcatatac |
32835548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 32841799 - 32841723
Alignment:
| Q |
151 |
acaacaaatcaaattggttcatagttttctgttttgagtcccttgtagaa--agagcgcttgtcaaatacatagaac |
225 |
Q |
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|||| |||||||||||||||||| || ||| ||||||||| ||| |||| ||||| ||||||||||||||||||| |
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| T |
32841799 |
acaagaaatcaaattggttcataattgtctattttgagtctcttacagaaagagagcccttgtcaaatacatagaac |
32841723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 504
Target Start/End: Complemental strand, 32835450 - 32835363
Alignment:
| Q |
417 |
acaacgcaatatagttgaaaataatgcaaaacatgtgtaacaaatgaaggaaaaacaaatcaaagtagttaaaccaatttgaatcttc |
504 |
Q |
| |
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||||||||||||| || ||||| || ||||| ||||||||||||| ||||||||| ||| ||| || || | |||||||||| |||| |
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| T |
32835450 |
acaacgcaatatattttaaaattattcaaaatatgtgtaacaaattaaggaaaaaataatgaaaatacttgagccaatttgaaacttc |
32835363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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