View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1556R-Insertion-12 (Length: 523)

Name: NF1556R-Insertion-12
Description: NF1556R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1556R-Insertion-12
NF1556R-Insertion-12
[»] chr1 (1 HSPs)
chr1 (9-523)||(28666994-28667492)


Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 9 - 523
Target Start/End: Original strand, 28666994 - 28667492
Alignment:
Q  9 cctcattctctctgcatttaaccattgtcaagcaatttgaagtctgcaatatccaacacactagactctaatctctcttgacaaaatttgcactaaatgt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28666994 cctcattctctctgcatttaaccattgtcaagcaatttgaagtctgcaatatccaacacactagactctaatctctcttgacaaaatttgcactaaatgt 28667093  T
Q  109 acgacttgcagttatctaattttatctaaactcaagtacaattgttatctaattttattatccttttattacaatttgatcatacaaaattctttgattt 208  Q
    |||| |||||||||              ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  28667094 acgaattgcagtta--------------aactcaagtacaattgttatctaattttattatccatttattacaatttgatcatacaaaattctatgattt 28667179  T
Q  209 aattttaaggatgctagcataaaagacaaacaaatgttcgatcttagctatgagaggtgtatgcatttagtgtacgaccatgaactcatgcctcgaacaa 308  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28667180 aattttaaggatgctagc-taaaagacaaacaaatgttcgatcttagctatgagaggtgtatgcatttagtgtacgaccatgaactcgtgcctcgaacaa 28667278  T
Q  309 aattactcatatagtctagcggaagagatcagtctcccatagcataacgaagaaacaaatgttcgatctaaactgtgagaggtgtatatatttaatgttt 408  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||    
T  28667279 aattactcatatggtctagcggaagagatcagtctcccatagcataacgaacgaacaaatgttcgatctaaactgtgagaggtgtatatatttagtgttt 28667378  T
Q  409 gatcatgccttaaacaaaattaccgcctagtagcatagaagnnnnnnnnttacaagtatacttgccttatttgttgccaaagtagcaccactaacaccca 508  Q
    |||||||||| ||||||||||||||||||||| ||||||||        |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28667379 gatcatgcctcaaacaaaattaccgcctagtaacatagaag-aaaaaaattacaagtgtacttgccttatttgttgccaaagtagcaccactaacaccca 28667477  T

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