View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1556R-Insertion-15 (Length: 86)

Name: NF1556R-Insertion-15
Description: NF1556R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1556R-Insertion-15
NF1556R-Insertion-15
[»] chr2 (7 HSPs)
chr2 (8-86)||(2329904-2329982)
chr2 (8-75)||(2326189-2326256)
chr2 (20-78)||(2350216-2350274)
chr2 (9-78)||(2320336-2320405)
chr2 (11-78)||(2302637-2302704)
chr2 (9-78)||(2293016-2293085)
chr2 (9-78)||(2309347-2309416)


Alignment Details
Target: chr2 (Bit Score: 75; Significance: 3e-35; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-35
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 2329904 - 2329982
Alignment:
Q  8 aatatcggttctcgaccttccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaactcctccgtct 86  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2329904 aatatcggttctcgaccttccattttcatcgccgaccgtgctctggcccaccacgctctcgttcaaaactcctccgtct 2329982  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 5e-19
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 2326189 - 2326256
Alignment:
Q  8 aatatcggttctcgaccttccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaa 75  Q
    |||||||| ||  |||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  2326189 aatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgccctcgttcaaaa 2326256  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 2350216 - 2350274
Alignment:
Q  20 cgaccttccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaactc 78  Q
    ||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||    
T  2350216 cgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaactc 2350274  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 7e-18
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 2320336 - 2320405
Alignment:
Q  9 atatcggttctcgaccttccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaactc 78  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||| ||||| | |||||||||||||||    
T  2320336 atatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactc 2320405  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 2302637 - 2302704
Alignment:
Q  11 atcggttctcgaccttccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaactc 78  Q
    |||||||||||||||||||||||||||   |||| ||||||||||||||| | |||||||||||||||    
T  2302637 atcggttctcgaccttccattttcatcgatgaccatgctctggcccaccatgttctcgttcaaaactc 2302704  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 2293016 - 2293085
Alignment:
Q  9 atatcggttctcgaccttccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaactc 78  Q
    ||||||||||||||||||||||||||||   ||||| | ||||||||||||| | |||||||||||||||    
T  2293016 atatcggttctcgaccttccattttcattaacgaccatactctggcccaccatgttctcgttcaaaactc 2293085  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 2309347 - 2309416
Alignment:
Q  9 atatcggttctcgaccttccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaactc 78  Q
    |||||||||||| ||||||||||||||||  ||||| ||||||||| ||||| | |||||||||||||||    
T  2309347 atatcggttctcaaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactc 2309416  T

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