View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1556R-Insertion-4 (Length: 842)

Name: NF1556R-Insertion-4
Description: NF1556R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1556R-Insertion-4
NF1556R-Insertion-4
[»] chr5 (7 HSPs)
chr5 (212-527)||(6306502-6306817)
chr5 (610-842)||(33807984-33808213)
chr5 (610-842)||(33811638-33811867)
chr5 (610-842)||(33816556-33816785)
chr5 (9-119)||(6316708-6316818)
chr5 (573-609)||(6306463-6306499)
chr5 (693-744)||(22763905-22763957)
[»] chr3 (8 HSPs)
chr3 (610-842)||(50603172-50603403)
chr3 (609-789)||(44782523-44782713)
chr3 (609-789)||(54967209-54967399)
chr3 (691-789)||(18556392-18556491)
chr3 (693-789)||(39298813-39298908)
chr3 (693-789)||(54979933-54980031)
chr3 (763-834)||(31725346-31725417)
chr3 (689-719)||(17645867-17645897)
[»] chr6 (5 HSPs)
chr6 (610-842)||(31151926-31152158)
chr6 (610-789)||(22981524-22981710)
chr6 (693-789)||(23806787-23806884)
chr6 (686-832)||(1111378-1111524)
chr6 (610-675)||(23806698-23806761)
[»] chr1 (2 HSPs)
chr1 (610-826)||(29706854-29707069)
chr1 (693-734)||(27642184-27642225)
[»] scaffold0045 (1 HSPs)
scaffold0045 (628-745)||(26516-26631)
[»] chr7 (10 HSPs)
chr7 (609-789)||(25857130-25857317)
chr7 (610-789)||(4842648-4842837)
chr7 (610-785)||(4835575-4835758)
chr7 (691-789)||(13465046-13465145)
chr7 (693-745)||(27341025-27341077)
chr7 (610-660)||(24380113-24380163)
chr7 (684-789)||(17845865-17845969)
chr7 (693-742)||(24379370-24379420)
chr7 (693-745)||(38994151-38994204)
chr7 (628-680)||(24379297-24379347)
[»] chr8 (4 HSPs)
chr8 (610-789)||(41481626-41481815)
chr8 (609-789)||(36167625-36167814)
chr8 (615-662)||(18951129-18951176)
chr8 (689-789)||(18951207-18951309)
[»] scaffold0479 (1 HSPs)
scaffold0479 (609-789)||(2747-2937)
[»] chr4 (3 HSPs)
chr4 (610-789)||(9757212-9757402)
chr4 (691-789)||(37286972-37287069)
chr4 (693-789)||(42682924-42683020)
[»] chr2 (2 HSPs)
chr2 (695-745)||(37037985-37038035)
chr2 (628-662)||(37038074-37038108)
[»] scaffold0003 (1 HSPs)
scaffold0003 (610-662)||(342217-342269)


Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 212 - 527
Target Start/End: Complemental strand, 6306817 - 6306502
Alignment:
Q  212 ttggaatatttattggttactgcattattgatgctgttagatagcaaagagttatcagaccaatgatacatgatactagagacttgttttgaactaatcg 311  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  6306817 ttggaatatttattggttactgcattattgatgttgttagatagtaaagagttatcagaccaatgatacatgatactagagacttgttatgaactgatcg 6306718  T
Q  312 caaaatatttgtatgccttctatcatttctgcaccaaattaggcatcagcatataggttatgatagtattatccaacaataacgtcattgtttatcctcc 411  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6306717 caaaatatttgtatgccttctatcatttctgcaccaaattagacatcagcatataggttatgatagtattatccaacaataacgtcattgtttaccctcc 6306618  T
Q  412 aaactgaggaattgttatggaacagcctgaaagtgcaacataaatcttcaaaggcaaaaacaaatggagtggaaaattgggagagaataaattcaaaacc 511  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6306617 aaactgaggaattgttatggagcagcctgaaagtgcaacataaatcttcaaaggcaaaaacaaatggagtggaaaattgggagagaagaaattcaaaacc 6306518  T
Q  512 agtagcaaaatcagtc 527  Q
    ||||||||||||||||    
T  6306517 agtagcaaaatcagtc 6306502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 610 - 842
Target Start/End: Complemental strand, 33808213 - 33807984
Alignment:
Q  610 tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa 709  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  33808213 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa 33808116  T
Q  710 ccttctcaatgtgagtaaggaaaaaccacgggaccccgtaagcctcttaaatctccactataataataatgggaatacaatccttcaccttcaggtggac 809  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||    
T  33808115 ccttctcaatgtgagtaaggaaaaaccacgggaccc-gtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac 33808017  T
Q  810 ctaactatgtatctcaatttgtagatacaactc 842  Q
    |||||||||||||||||||||||||||||||||    
T  33808016 ctaactatgtatctcaatttgtagatacaactc 33807984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 610 - 842
Target Start/End: Complemental strand, 33811867 - 33811638
Alignment:
Q  610 tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa 709  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  33811867 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa 33811770  T
Q  710 ccttctcaatgtgagtaaggaaaaaccacgggaccccgtaagcctcttaaatctccactataataataatgggaatacaatccttcaccttcaggtggac 809  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||    
T  33811769 ccttctcaatgtgagtaaggaaaaaccacgggaccc-gtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac 33811671  T
Q  810 ctaactatgtatctcaatttgtagatacaactc 842  Q
    |||||||||||||||||||||||||||||||||    
T  33811670 ctaactatgtatctcaatttgtagatacaactc 33811638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 610 - 842
Target Start/End: Complemental strand, 33816785 - 33816556
Alignment:
Q  610 tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa 709  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  33816785 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa 33816688  T
Q  710 ccttctcaatgtgagtaaggaaaaaccacgggaccccgtaagcctcttaaatctccactataataataatgggaatacaatccttcaccttcaggtggac 809  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||    
T  33816687 ccttctcaatgtgagtaaggaaaaaccacgggaccc-gtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac 33816589  T
Q  810 ctaactatgtatctcaatttgtagatacaactc 842  Q
    |||||||||||||||||||||||||||||||||    
T  33816588 ctaactatgtatctcaatttgtagatacaactc 33816556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 6316818 - 6316708
Alignment:
Q  9 aagtatagttaaataggcgtttaagctagagaagtggccaacttacccaacagattcagtgtcaagtgacacaaaatctgcaatactactatgacaagta 108  Q
    |||||||||||||||||  || ||| ||||||| ||||||||| ||||||| |||||| ||||| ||| |||||| ||||| |||| | ||| |||||||    
T  6316818 aagtatagttaaatagggattaaagttagagaaatggccaactcacccaaccgattcaatgtcaggtggcacaaagtctgctataccagtataacaagta 6316719  T
Q  109 tagccagagta 119  Q
    ||||| |||||    
T  6316718 tagcccgagta 6316708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 573 - 609
Target Start/End: Complemental strand, 6306499 - 6306463
Alignment:
Q  573 cattagtggttagtatgtggactatttttcttaaaaa 609  Q
    |||||||||||||||||||||||||||||||||||||    
T  6306499 cattagtggttagtatgtggactatttttcttaaaaa 6306463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 693 - 744
Target Start/End: Original strand, 22763905 - 22763957
Alignment:
Q  693 aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacc 744  Q
    ||||||||| ||||||||||||||||| |||| || |||||||||||||||||    
T  22763905 aattttagcatggaaaaccttctcaatatgagaaagggaaaaaccacgggacc 22763957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 165; Significance: 8e-88; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 610 - 842
Target Start/End: Complemental strand, 50603403 - 50603172
Alignment:
Q  610 tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa 709  Q
    ||||||||||||||||   |||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  50603403 tgttgggaaatgccagtacaatttctctcctccgtgaactcaaaatagacactttagcgaaaacgtaaaatgacacacaataaaattttagcgtggaaaa 50603304  T
Q  710 ccttctcaatgtgagtaaggaaaaaccacgggaccccgtaagcctcttaaatctccactataataataatgggaatacaatccttcaccttcaggtggac 809  Q
    ||||||||||||||||||| ||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||  ||||||||| || |||||    
T  50603303 ccttctcaatgtgagtaagaaaaaaccac-ggaacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcacctttagatggac 50603205  T
Q  810 ctaactatgtatctcaatttgtagatacaactc 842  Q
    |||||||| ||||||||||||||||||||||||    
T  50603204 ctaactatatatctcaatttgtagatacaactc 50603172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 609 - 789
Target Start/End: Original strand, 44782523 - 44782713
Alignment:
Q  609 atgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgacacacaacaaaattt 697  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||| |||  |||||||||||| |           ||||||||| || | |||||    
T  44782523 atgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacac--tagcggaaacgtgaaatataaacgtaatgacaca-aagagaattt 44782619  T
Q  698 tagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggaccccgtaagcctcttaaatc-tccactataataataatgggaatacaa 789  Q
    |||||||||||||||||||||| |||| ||||  ||||||||||||| ||| |   ||||||||| | ||||||||||| |||||||||||||||    
T  44782620 tagcgtggaaaaccttctcaatatgagaaagggaaaaaaccacggga-cccttggacctcttaaaacttccactataatgataatgggaatacaa 44782713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 609 - 789
Target Start/End: Original strand, 54967209 - 54967399
Alignment:
Q  609 atgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgacacacaacaaaattt 697  Q
    ||||||||||||||| || ||||||||||||||||| ||||||||||||||||  |||||||||||| |           ||||||||| || | |||||    
T  54967209 atgttgggaaatgcctgcataatttccctcctccgtcaactcaaaataggcac--tagcggaaacgtgaaataaaagcgtaatgacaca-aagagaattt 54967305  T
Q  698 tagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggaccccgtaagcctctt--aaatctccactataataataatgggaatacaa 789  Q
    |||||||||||||||||||||| |||| || ||||||||||||||| ||| |  |||||||  |||  ||||||||||| |||||||||||||||    
T  54967306 tagcgtggaaaaccttctcaatatgagaaagggaaaaaccacggga-cccttgggcctcttaaaaacttccactataatgataatgggaatacaa 54967399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 691 - 789
Target Start/End: Original strand, 18556392 - 18556491
Alignment:
Q  691 aaaattttagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggaccc-cgtaagcctcttaaatctccactataataataatgggaatac 787  Q
    ||||||||||||||||||||||||||||| |||| ||||  |||||||||||||||| ||  |||||||||||  ||||||||||| | |||| ||||||    
T  18556392 aaaattttagcgtggaaaaccttctcaatctgagaaaggcaaaaaaccacgggaccctcg--agcctcttaaacttccactataatgacaatgagaatac 18556489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 693 - 789
Target Start/End: Complemental strand, 39298908 - 39298813
Alignment:
Q  693 aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggaccccgtaagcctcttaaatctccactataataataatgggaatacaa 789  Q
    |||||||| ||| ||||||||||||||||||  ||||||||| ||||||| ||| |  ||||||||||  ||||||||||| |||| ||||||||||    
T  39298908 aattttagtgtgaaaaaccttctcaatgtgatgaaggaaaaatcacggga-cccttgtgcctcttaaacttccactataatgataaagggaatacaa 39298813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 693 - 789
Target Start/End: Original strand, 54979933 - 54980031
Alignment:
Q  693 aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggaccccgtaagcctctt--aaatctccactataataataatgggaatacaa 789  Q
    ||||||||| ||||||||||||||||| |||| || ||||||||||||||| ||| |  |||||||  |||  ||||||||||| |||||||||||||||    
T  54979933 aattttagcatggaaaaccttctcaatatgagaaagggaaaaaccacggga-cccttgggcctcttaaaaacttccactataatgataatgggaatacaa 54980031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 763 - 834
Target Start/End: Original strand, 31725346 - 31725417
Alignment:
Q  763 tccactataataataatgggaatacaatccttcaccttcaggtggacctaactatgtatctcaatttgtaga 834  Q
    |||| ||||| ||||||| ||||||||  ||||||  | |||||||||| || |||||||||||||||||||    
T  31725346 tccaatataacaataatgagaatacaaatcttcacacttaggtggaccttacgatgtatctcaatttgtaga 31725417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 719
Target Start/End: Complemental strand, 17645897 - 17645867
Alignment:
Q  689 acaaaattttagcgtggaaaaccttctcaat 719  Q
    |||||||||||||||||||||||||||||||    
T  17645897 acaaaattttagcgtggaaaaccttctcaat 17645867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 150; Significance: 7e-79; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 610 - 842
Target Start/End: Original strand, 31151926 - 31152158
Alignment:
Q  610 tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa 709  Q
    |||||||||||||| || ||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  31151926 tgttgggaaatgcctgcataatttccctcctctctgaactcaaaataggcactttagcggaaacataaaatgacacacaacaaaattttaatgtggaaaa 31152025  T
Q  710 ccttctcaatgtgagtaag-gaaaaaccacgggaccccgtaagcctcttaaatctccactataataataatgggaatacaatccttcaccttcaggtgga 808  Q
    |||||||||||||||||||  |||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||  ||||||| |||| ||||    
T  31152026 ccttctcaatgtgagtaagaaaaaaaccacggga-tccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcagatgga 31152124  T
Q  809 cctaactatgtatctcaatttgtagatacaactc 842  Q
    |||||||| |||||| ||||| ||||||||||||    
T  31152125 cctaactacgtatctaaatttatagatacaactc 31152158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 610 - 789
Target Start/End: Complemental strand, 22981710 - 22981524
Alignment:
Q  610 tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgt--aaaatga-------cacacaacaaaattttag 700  Q
    |||||||||||| | || ||||||||| ||||||||||||||||| ||||||  ||||||||||||  ||||| |        |||| | | ||||||||    
T  22981710 tgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcac--tagcggaaacgtgaaaaataagcgtaatgacac-agagaattttag 22981614  T
Q  701 cgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggaccccgtaagcctcttaaatc-tccactataataataatgggaatacaa 789  Q
    |||||||||||||||||||||||| || ||||||||||||||| ||| |  |||||||||| | ||||||||||| |||||||||||||||    
T  22981613 cgtggaaaaccttctcaatgtgagaaagggaaaaaccacggga-cccttgggcctcttaaaacttccactataatgataatgggaatacaa 22981524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 693 - 789
Target Start/End: Original strand, 23806787 - 23806884
Alignment:
Q  693 aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggaccccgtaagcctcttaaatc-tccactataataataatgggaatacaa 789  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||| ||| |  |||||||||| | ||||||||||| |||||||||||||||    
T  23806787 aattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacggga-cccttgggcctcttaaaacttccactataatgataatgggaatacaa 23806884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 686 - 832
Target Start/End: Original strand, 1111378 - 1111524
Alignment:
Q  686 acaacaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggaccccgtaagcctcttaaatctccacta-taataataatgggaa 784  Q
    ||||||||||||||| || ||||||||||| ||||| | |||||||||| || ||||| |  |||| ||||||||||| |  || ||||||||||| |||    
T  1111378 acaacaaaattttagtgtagaaaaccttctgaatgtaaataaggaaaaatcatgggactca-taagtctcttaaatctactataataataataatgagaa 1111476  T
Q  785 tacaatccttcaccttcaggtggacctaactatgtatctcaatttgta 832  Q
    ||||| | |||||| | | ||  |||||||||||||||||||||||||    
T  1111477 tacaaactttcacccttacgtaaacctaactatgtatctcaatttgta 1111524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 610 - 675
Target Start/End: Original strand, 23806698 - 23806761
Alignment:
Q  610 tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgt 675  Q
    |||||||||||| | || ||||||||| ||||||||||||||||| ||||||  ||||||||||||    
T  23806698 tgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcac--tagcggaaacgt 23806761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 3e-47; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 610 - 826
Target Start/End: Original strand, 29706854 - 29707069
Alignment:
Q  610 tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa 709  Q
    |||||| |||||||  | ||||||| ||| |||||||||| |||||| ||||||||||  ||| ||||||||||||||||||||||||||| | ||||||    
T  29706854 tgttggaaaatgcctccataatttctctcatccgtgaacttaaaatatgcactttagcaaaaatgtaaaatgacacacaacaaaattttagtgaggaaaa 29706953  T
Q  710 ccttctcaatgtgagtaaggaaaaaccacgggaccccgtaagcctcttaaatctccactataataataatgggaatacaatccttcaccttcaggtggac 809  Q
    |||||||||| ||||||||||| || |||||||| |  ||  |||||||||||||||||||||||||||||| |  | ||  ||||||| || |||||||    
T  29706954 ccttctcaatatgagtaaggaacaatcacgggactca-tagacctcttaaatctccactataataataatggaataaaaaatcttcaccctcgggtggac 29707052  T
Q  810 ctaactatgtatctcaa 826  Q
    |||||||||||||||||    
T  29707053 ctaactatgtatctcaa 29707069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 734
Target Start/End: Complemental strand, 27642225 - 27642184
Alignment:
Q  693 aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaa 734  Q
    |||||| ||||| ||||||||||||||||||| |||||||||    
T  27642225 aattttggcgtgtaaaaccttctcaatgtgagaaaggaaaaa 27642184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 628 - 745
Target Start/End: Original strand, 26516 - 26631
Alignment:
Q  628 taatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaaccttctcaatgtgagtaa 727  Q
    |||| |||||||| |||||||||||||||| |||||||||| ||||||||||| ||||  ||||||||||||| |||||||||||| |||||||||||||    
T  26516 taatctccctccttcgtgaactcaaaatagacactttagcgaaaacgtaaaataacac--aacaaaattttagggtggaaaaccttttcaatgtgagtaa 26613  T
Q  728 ggaaaaaccacgggaccc 745  Q
    |||||||| |||||||||    
T  26614 ggaaaaactacgggaccc 26631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 609 - 789
Target Start/End: Original strand, 25857130 - 25857317
Alignment:
Q  609 atgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattt 697  Q
    ||||||||||||||| || |||||||||||||||||||||| ||||||||||||  ||||||||||| ||||           |||||| |    |||||    
T  25857130 atgttgggaaatgcctgcataatttccctcctccgtgaacttaaaataggcact--agcggaaacgtgaaatataagcgtaatgacacagag---aattt 25857224  T
Q  698 tagcgtggaaaaccttctcaatgtgag-taaggaaaaaccacgggaccccgtaagcctcttaaatc-tccactataataataatgggaatacaa 789  Q
    |||||||||||||||||||||||||||  ||||||||||||||||| ||| |  |||||||||| | ||||||||||| |||||||||||||||    
T  25857225 tagcgtggaaaaccttctcaatgtgagaaaaggaaaaaccacggga-cccttgggcctcttaaaacttccactataatgataatgggaatacaa 25857317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 610 - 789
Target Start/End: Original strand, 4842648 - 4842837
Alignment:
Q  610 tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgacacacaacaaaatttt 698  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||  |||||||||||| |           ||||||||| || | ||||||    
T  4842648 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcac--tagcggaaacgtgaaatataagtgtaatgacaca-aagagaatttt 4842744  T
Q  699 agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggaccccgtaagcctcttaaatc-tccactataataataatgggaatacaa 789  Q
    |||||||||||||||||||||||||| ||||  ||||||||| ||| ||| |  |||||||||| | ||||||||||| ||||| |||||||||    
T  4842745 agcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacagga-cccttgggcctcttaaaacttccactataatgataataggaatacaa 4842837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 610 - 785
Target Start/End: Original strand, 4835575 - 4835758
Alignment:
Q  610 tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatg-acac------aca-acaaaattttagc 701  Q
    |||||||||||||| || ||||||||||||||| |||||||||||||||||||  || |||||||| ||||  | ||      ||| | | |||||||||    
T  4835575 tgttgggaaatgcctgcataatttccctcctccatgaactcaaaataggcact--agtggaaacgtgaaatataaacgtaatgacacagagaattttagc 4835672  T
Q  702 gtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggaccccgtaagcctcttaaatc-tccactataataataatgggaat 785  Q
    ||||||||||||||||||||||| ||||  ||||||||||||| ||| |  |||||||||| | ||||||||||| |||||||||||    
T  4835673 gtggaaaaccttctcaatgtgagaaagggaaaaaaccacggga-cccttgggcctcttaaaacttccactataatgataatgggaat 4835758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 691 - 789
Target Start/End: Original strand, 13465046 - 13465145
Alignment:
Q  691 aaaattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggaccccgtaagcctcttaaatc-tccactataataataatgggaataca 788  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||| ||| ||| |  |||||||||| | ||||||||||| ||||||||||||||    
T  13465046 aaaattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacagga-cccttgggcctcttaaaacatccactataatgataatgggaataca 13465144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 693 - 745
Target Start/End: Original strand, 27341025 - 27341077
Alignment:
Q  693 aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggaccc 745  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  27341025 aattttagcgtggaaaaccttctcaatgtaagaaaggaaaaaccacgggaccc 27341077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 610 - 660
Target Start/End: Complemental strand, 24380163 - 24380113
Alignment:
Q  610 tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggca 660  Q
    |||||||||||||| || |||||||||||||| ||||||||||||||||||    
T  24380163 tgttgggaaatgcctgcataatttccctcctctgtgaactcaaaataggca 24380113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 684 - 789
Target Start/End: Complemental strand, 17845969 - 17845865
Alignment:
Q  684 acacaacaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggaccccgtaagcctcttaaatctccactataataataatggga 783  Q
    |||||| | |||||||| ||||||||||||| ||||||||| ||||||||||||| ||| ||  |   |||||||||  ||||||||||| ||||||| |    
T  17845969 acacaagagaattttagagtggaaaaccttcccaatgtgaggaaggaaaaaccacagga-cctttggacctcttaaacttccactataatgataatggaa 17845871  T
Q  784 atacaa 789  Q
    ||||||    
T  17845870 atacaa 17845865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 693 - 742
Target Start/End: Original strand, 24379370 - 24379420
Alignment:
Q  693 aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacggga 742  Q
    ||||||| |||||||||||||||||||||||| || |||||||||||||||    
T  24379370 aattttaacgtggaaaaccttctcaatgtgagaaagggaaaaaccacggga 24379420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 693 - 745
Target Start/End: Original strand, 38994151 - 38994204
Alignment:
Q  693 aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggaccc 745  Q
    ||||||| |||||||||||||||||||| ||| || ||||||||||||||||||    
T  38994151 aattttaacgtggaaaaccttctcaatgcgagaaagggaaaaaccacgggaccc 38994204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 628 - 680
Target Start/End: Original strand, 24379297 - 24379347
Alignment:
Q  628 taatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat 680  Q
    ||||||| |||||||||||||| |||||||||||  ||| |||||||||||||    
T  24379297 taatttctctcctccgtgaacttaaaataggcac--tagtggaaacgtaaaat 24379347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 6e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 610 - 789
Target Start/End: Complemental strand, 41481815 - 41481626
Alignment:
Q  610 tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 698  Q
    |||||||||||||| || |||||||||||||||||||||||||||||| ||||  ||||||||||| ||||           |||||| || | ||||||    
T  41481815 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt 41481719  T
Q  699 agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggaccccgtaagcctcttaaatc-tccactataataataatgggaatacaa 789  Q
    ||||||||||||||||||||| |||| ||||  ||||||||||||| ||| |  |||||||||| | ||||||||||| |||||||||||||||    
T  41481718 agcgtggaaaaccttctcaatatgagaaagggaaaaaaccacggga-cccttgggcctcttaaaacttccactataatgataatgggaatacaa 41481626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 609 - 789
Target Start/End: Complemental strand, 36167814 - 36167625
Alignment:
Q  609 atgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgacacacaacaaaattt 697  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||  |||||||||||| |           ||||||||| || | |||||    
T  36167814 atgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcac--tagcggaaacgtgaaatataaacgtaatgacaca-aagagaattt 36167718  T
Q  698 tagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggaccccgtaagcctcttaaatc-tccactataataataatgggaatacaa 789  Q
    |||||||||||||||||||||| |||| ||||  |||||||||||   ||| |  |||||||||| | ||||||||||| |||||||||||||||    
T  36167717 tagcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgg--acccttgggcctcttaaaacttccactataatgataatgggaatacaa 36167625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 615 - 662
Target Start/End: Original strand, 18951129 - 18951176
Alignment:
Q  615 ggaaatgccagcttaatttccctcctccgtgaactcaaaataggcact 662  Q
    ||||||||| || |||||| ||||||||||||||||||||||||||||    
T  18951129 ggaaatgcctgcataatttgcctcctccgtgaactcaaaataggcact 18951176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 689 - 789
Target Start/End: Original strand, 18951207 - 18951309
Alignment:
Q  689 acaaaattttagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggaccccgtaagcctcttaaatc-tccactataataataatgggaat 785  Q
    ||| ||||||||| |||||||||||||||||||||| ||||  |||||||||| || ||  |  || ||||||| | ||||||||||| |||||||||||    
T  18951207 acagaattttagcatggaaaaccttctcaatgtgagaaagggaaaaaaccacgaga-cctttgggcttcttaaaacttccactataatgataatgggaat 18951305  T
Q  786 acaa 789  Q
    ||||    
T  18951306 acaa 18951309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 609 - 789
Target Start/End: Complemental strand, 2937 - 2747
Alignment:
Q  609 atgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattt 697  Q
    ||||||||||||||  || |||||||||| ||||||||||||||||||| ||||  ||||||||||| ||||           |||||| || | |||||    
T  2937 atgttgggaaatgcatgcataatttcccttctccgtgaactcaaaatagacact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaattt 2841  T
Q  698 tagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggaccccgtaagcctcttaaatc-tccactataataataatgggaatacaa 789  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||||| ||| |  |||||||||| | ||||||||||| |||||||||||||||    
T  2840 tagcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacggga-cccttgggcctcttaaaacttccactataatgataatgggaatacaa 2747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 610 - 789
Target Start/End: Original strand, 9757212 - 9757402
Alignment:
Q  610 tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 698  Q
    |||||| ||||||| || |||||||| ||||||||||||||||||||||||||  ||||||||||| ||||           |||||| || | ||||||    
T  9757212 tgttggtaaatgcctgcataatttccttcctccgtgaactcaaaataggcact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaatttt 9757308  T
Q  699 agcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggaccccgtaagcctctt---aaatctccactataataataatgggaatacaa 789  Q
    |||||||||||||||||||||||||| || ||||||||||||||| ||| |  |||||||   |||  ||||||||||| |||||||||||||||    
T  9757309 agcgtggaaaaccttctcaatgtgagaaagggaaaaaccacggga-cccttgggcctcttaaaaaacttccactataatgataatgggaatacaa 9757402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 691 - 789
Target Start/End: Original strand, 37286972 - 37287069
Alignment:
Q  691 aaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggaccccgtaagcctcttaaatctccactataataataatgggaatacaa 789  Q
    ||||||||||| |||||||||||||||||||||  ||||||||| ||||||| ||| ||||| |||||||  |||||||||||||||||  ||||||||    
T  37286972 aaaattttagcatggaaaaccttctcaatgtgaaaaaggaaaaatcacggga-cccttaagcatcttaaacttccactataataataataagaatacaa 37287069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 693 - 789
Target Start/End: Original strand, 42682924 - 42683020
Alignment:
Q  693 aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggaccccgtaagcctcttaaatct-ccactataataataatgggaatacaa 789  Q
    ||||| |||||||||||||||||||||||||| ||||||||| ||||||||||    | ||||||||| || |||||||||| |||||||||||||||    
T  42682924 aatttcagcgtggaaaaccttctcaatgtgagaaaggaaaaatcacgggacccttgga-cctcttaaaacttccactataatgataatgggaatacaa 42683020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 695 - 745
Target Start/End: Complemental strand, 37038035 - 37037985
Alignment:
Q  695 ttttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggaccc 745  Q
    |||||||| ||||||||||||||||||||| ||||| ||||||||||||||    
T  37038035 ttttagcgaggaaaaccttctcaatgtgagaaaggagaaaccacgggaccc 37037985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 628 - 662
Target Start/End: Complemental strand, 37038108 - 37038074
Alignment:
Q  628 taatttccctcctccgtgaactcaaaataggcact 662  Q
    ||||||| |||||||||||||||||||||||||||    
T  37038108 taatttctctcctccgtgaactcaaaataggcact 37038074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 610 - 662
Target Start/End: Original strand, 342217 - 342269
Alignment:
Q  610 tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcact 662  Q
    |||||| ||||||| || |||||| ||||||||||||||||||||||||||||    
T  342217 tgttggaaaatgcctgcataattttcctcctccgtgaactcaaaataggcact 342269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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