View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1556R-Insertion-5 (Length: 820)

Name: NF1556R-Insertion-5
Description: NF1556R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1556R-Insertion-5
NF1556R-Insertion-5
[»] chr2 (13 HSPs)
chr2 (690-820)||(32785156-32785268)
chr2 (375-442)||(32784357-32784424)
chr2 (236-359)||(32784184-32784304)
chr2 (693-755)||(32792672-32792734)
chr2 (690-754)||(32799288-32799352)
chr2 (68-144)||(32784061-32784136)
chr2 (694-753)||(32813476-32813535)
chr2 (580-627)||(32815895-32815942)
chr2 (690-744)||(28213781-28213835)
chr2 (694-755)||(32310970-32311031)
chr2 (580-627)||(32784644-32784691)
chr2 (693-741)||(32563818-32563866)
chr2 (662-692)||(32784644-32784674)


Alignment Details
Target: chr2 (Bit Score: 68; Significance: 6e-30; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 690 - 820
Target Start/End: Original strand, 32785156 - 32785268
Alignment:
Q  690 aaggcataacagaacattttcatttgttgatatttactgcagccttgcaacactatagtaaacattaacactatagtttaaaagttctgaaatcttcctg 789  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||| |||||||    
T  32785156 aaggcataacagaacattttcatttgttgatatttactgcagccttgcaaca------------------ctatagtttaaaagttctgaaagcttcctg 32785237  T
Q  790 aatggaatagaatctctttcaccgtcattgt 820  Q
    |||||||||||||||||||||||||||||||    
T  32785238 aatggaatagaatctctttcaccgtcattgt 32785268  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 375 - 442
Target Start/End: Original strand, 32784357 - 32784424
Alignment:
Q  375 tattcgaactcaccaacaattgtccgaatatatgaataaggaaaaaccaaagaatttgtacggtatag 442  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  32784357 tattcgaactccccaacaattgtcagaatatatgaataaggaaaaaccaacgaatttgtacggtatag 32784424  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 236 - 359
Target Start/End: Original strand, 32784184 - 32784304
Alignment:
Q  236 gaatcggttttctaaaaatggtagggagataaaagcagcttttaaataaatatagagnnnnnnntagtttatcttagcccaacttaccaacactttagtt 335  Q
    ||||||||||||||||||||||| ||| |||||||||| | | |||||||||||||        ||||||| ||||| ||||||||||||||| || |||    
T  32784184 gaatcggttttctaaaaatggtaaggaaataaaagcagatgtgaaataaatataga--aaaaaatagtttagcttagtccaacttaccaacac-ttggtt 32784280  T
Q  336 tgtaagatggtgctggtttattcc 359  Q
    ||||||||||| ||||||||||||    
T  32784281 tgtaagatggttctggtttattcc 32784304  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 693 - 755
Target Start/End: Original strand, 32792672 - 32792734
Alignment:
Q  693 gcataacagaacattttcatttgttgatatttactgcagccttgcaacactatagtaaacatt 755  Q
    ||||||||||||| ||| ||||||| ||||||| |||||||||||||||||||||||||||||    
T  32792672 gcataacagaacaatttgatttgtttatatttattgcagccttgcaacactatagtaaacatt 32792734  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 690 - 754
Target Start/End: Original strand, 32799288 - 32799352
Alignment:
Q  690 aaggcataacagaacattttcatttgttgatatttactgcagccttgcaacactatagtaaacat 754  Q
    ||||||||| |||||| ||| ||||||||||||||| |||||||||||||||||| |||||||||    
T  32799288 aaggcataaaagaacactttgatttgttgatatttattgcagccttgcaacactagagtaaacat 32799352  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 32784061 - 32784136
Alignment:
Q  68 ggattgagaaattatctagaataaacaaagaggtgtttttatctttcttccaactatttttagaaaaccgattccgt 144  Q
    ||||||||| |  ||||| |||||| |||||| ||||||||||| ||||||||||| ||||||||||||||||||||    
T  32784061 ggattgagagacaatctaaaataaataaagagatgtttttatctgtcttccaacta-ttttagaaaaccgattccgt 32784136  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 694 - 753
Target Start/End: Original strand, 32813476 - 32813535
Alignment:
Q  694 cataacagaacattttcatttgttgatatttactgcagccttgcaacactatagtaaaca 753  Q
    |||||||||||| ||| ||||||| ||||||| |||||||||||||||||| ||||||||    
T  32813476 cataacagaacactttgatttgtttatatttattgcagccttgcaacactaaagtaaaca 32813535  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 580 - 627
Target Start/End: Original strand, 32815895 - 32815942
Alignment:
Q  580 tggttgggaggggatatttgacccactaaaggtggccaactaggtttt 627  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||    
T  32815895 tggttgggaggggacgtttgacccactaaaggtggccaactaggtttt 32815942  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 690 - 744
Target Start/End: Original strand, 28213781 - 28213835
Alignment:
Q  690 aaggcataacagaacattttcatttgttgatatttactgcagccttgcaacacta 744  Q
    |||||||||||||||| ||| |||| |||||||||| ||||||||||||||||||    
T  28213781 aaggcataacagaacactttgatttattgatatttattgcagccttgcaacacta 28213835  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 694 - 755
Target Start/End: Complemental strand, 32311031 - 32310970
Alignment:
Q  694 cataacagaacattttcatttgttgatatttactgcagccttgcaacactatagtaaacatt 755  Q
    |||||||||||| ||| | ||||| ||||||| |||||||||||||||||| ||||||||||    
T  32311031 cataacagaacactttgacttgtttatatttattgcagccttgcaacactaaagtaaacatt 32310970  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 580 - 627
Target Start/End: Original strand, 32784644 - 32784691
Alignment:
Q  580 tggttgggaggggatatttgacccactaaaggtggccaactaggtttt 627  Q
    ||||||||||||||||||||||||||||||| || |||| ||||||||    
T  32784644 tggttgggaggggatatttgacccactaaagatgaccaattaggtttt 32784691  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 693 - 741
Target Start/End: Original strand, 32563818 - 32563866
Alignment:
Q  693 gcataacagaacattttcatttgttgatatttactgcagccttgcaaca 741  Q
    ||||||||||||| ||| ||||||| ||||||| |||||||||||||||    
T  32563818 gcataacagaacactttgatttgtttatatttattgcagccttgcaaca 32563866  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 662 - 692
Target Start/End: Original strand, 32784644 - 32784674
Alignment:
Q  662 tggttgggaggggatatttgacccactaaag 692  Q
    |||||||||||||||||||||||||||||||    
T  32784644 tggttgggaggggatatttgacccactaaag 32784674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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