View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1556R-Insertion-6 (Length: 802)
Name: NF1556R-Insertion-6
Description: NF1556R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1556R-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 9 - 473
Target Start/End: Original strand, 40306505 - 40306967
Alignment:
| Q |
9 |
atacatatccatatgcttggcatccttgaattgagtgttttgcactagttatactggtagatggttttgtgttggcatggagtatttgat--gattttgc |
106 |
Q |
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| T |
40306505 |
atacatatccatatgcttggcat---tgaattgagtgttttgcaccagttatactggtagatggttttgtgttggcattgagtatttgatatgattttgc |
40306601 |
T |
|
| Q |
107 |
tcttagtttttgtcttgaaacttataattgtattatttgaacaagggaaatatcgaaagnnnnnnnnnngactaaagtgcaatagaataaatatggtgca |
206 |
Q |
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| T |
40306602 |
tcttagtttttgtcttgaaacttataattgtattatttgaacaagggaaatatcgaaagaaaaaaaaaagactaaaatgtaatagaataaatgtggtgca |
40306701 |
T |
|
| Q |
207 |
aaaagtcattcct-ttttagccaacatactcgttggttagttggaaactattcggcccatatgaactcttctatggtagagatacaattaggacaattgc |
305 |
Q |
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| T |
40306702 |
aaaagtcattcctcttttagccaacatactcgttggttagttgaaaacgattcggcccatatgaactct---atggtagagatacaattagggcaattgc |
40306798 |
T |
|
| Q |
306 |
tctttagacacccttaaaaacgacttaaaggtgctaattgccattcaaacattttttaaacagttgaatcactttctaaatcggttt-aactatttaaaa |
404 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
40306799 |
tctttagacacccttaaaaacgactgaaaggtgctaattgccattcagacattttttaaacagttgaatcactttctaaatcggtttgacctatttaaaa |
40306898 |
T |
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| Q |
405 |
agtgttaaaacgtcaattcactaccgtttaaagtgttttaggttaaatgtataaagagcaatctctcac |
473 |
Q |
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| T |
40306899 |
agtgttaaaacggcaattcactaccgtttaaagtgttttaggttaaatgtataaagagcaatctctcac |
40306967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 540 - 802
Target Start/End: Original strand, 40307035 - 40307296
Alignment:
| Q |
540 |
gctaattacaaacaaaatttatgtttatatattatagtttatttcgatggctcatgcnnnnnnnnnnnnnngcatccaccacagatagagaggtcgttac |
639 |
Q |
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| T |
40307035 |
gctaattacaaacaaaatttgtgtttatatattatagtttatttctatggctcatgcaattttttttttt-gcctccaccactgatagagaggtcgttac |
40307133 |
T |
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| Q |
640 |
gaacgaattccatcaatgtttgaatccaaaggacgttgggatgtgttagtagttggtgaaccattacacgacatggaggacctgagggaaggaaagatct |
739 |
Q |
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| T |
40307134 |
gaacgaattccatcaatgtttgaatccaaaggacggtggaatgtgttagtagttggtgaaccgttacacgacatggaggacctgagggaagggaagatct |
40307233 |
T |
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| Q |
740 |
ctgttgaggtgttgtcgttatgcattattacttgattgtcggagtgtttgaagctacaccacc |
802 |
Q |
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| T |
40307234 |
ctgttgaggtgttgtcgttatacattattacttgattgtcggagtgtttgaagctacaccacc |
40307296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 557 - 587
Target Start/End: Complemental strand, 30700547 - 30700517
Alignment:
| Q |
557 |
tttatgtttatatattatagtttatttcgat |
587 |
Q |
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| T |
30700547 |
tttatgtttatatattatagtttatttcgat |
30700517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 34117259 - 34117226
Alignment:
| Q |
297 |
gacaattgctctttagacacccttaaaaacgact |
330 |
Q |
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| T |
34117259 |
gacaattgctctttagacacccttaaaaaagact |
34117226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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