View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1556R-Insertion-7 (Length: 772)
Name: NF1556R-Insertion-7
Description: NF1556R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1556R-Insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 9 - 595
Target Start/End: Original strand, 28118776 - 28119367
Alignment:
| Q |
9 |
gaaagttgctccataccaagtgatgtaccaaaaggtcacatggttgtatatgtaggagagaatcacaaaagatatgtgatcaaaattgcattgcttcatc |
108 |
Q |
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| T |
28118776 |
gaaagttgctccataccaagtgatgtaccaaaaggtcacatggttgtatatgtaggagagaatcacaaaagatatgtgatcaaaattgcattgcttcatc |
28118875 |
T |
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| Q |
109 |
atccactcttcaaagccttgttggatcaagctcaagaagagtatgatttcatggctgattcaaaactatgtattccttgtgatgaacatcttttcctaag |
208 |
Q |
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| T |
28118876 |
atccactcttcaaagccttgttggatcaagctcaagaagagtatgatttcatggctgattcaaaactatgtattccttgtcatgaacatcttttcctaag |
28118975 |
T |
|
| Q |
209 |
tgtcctacgatgtgctagttccccacagaatcaaaggatgtgtttgtgtctctaacaaattactttgttgatgagacattaatcagtattttttgtgatg |
308 |
Q |
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| T |
28118976 |
tgtcctacgatgtgctagttccccacagaatcaaaggatgtgtttgtgtctctaacaaattactttgttgatgagacattaatcagtattttttgtgatg |
28119075 |
T |
|
| Q |
309 |
atgaaattattgaacttttatagctaactgtgttgatgagtgatg-----atatatatgtaatgtagccgtaatattaattaaaatatgttgtaagtaga |
403 |
Q |
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| T |
28119076 |
ttgaaattattgaacttttatagctaactgtgtcgatgagtgatgataatatatatatgtaatgtagccgtaatattaattaaaatatgttgtaagtaga |
28119175 |
T |
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| Q |
404 |
ttgattgagatgtaagggatgtaattcatcatcaattcaagaagagagatgattctattaatttctttttgttggtcttacgtgtacaaagatttagtag |
503 |
Q |
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| T |
28119176 |
ttgattgagatgtaagggatgtaatccatcatcaattcaagaagagagatgattctattaatttctttttgttggtcttatgtgtacaaagatttagtag |
28119275 |
T |
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| Q |
504 |
tgtttgtatctagattgagcaaaaataagctagctttccgaagtaactaaacttgcactacccaattgctagtgcattaatgactagtaatt |
595 |
Q |
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| T |
28119276 |
tgtttgtatctagattgagcaaaaataagctagttttccgaagtaactaaacttgcactacccaattgctagtgcatttatgactagtaatt |
28119367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 9e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 24 - 211
Target Start/End: Complemental strand, 41011078 - 41010891
Alignment:
| Q |
24 |
ccaagtgatgtaccaaaaggtcacatggttgtatatgtaggagagaatcacaaaagatatgtgatcaaaattgcattgcttcatcatccactcttcaaag |
123 |
Q |
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|||| |||||| ||||| |||||| ||||||| |||||||| ||||| | || |||| ||| ||||| |||| ||| || ||||||||||| ||||| | |
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| T |
41011078 |
ccaaatgatgttccaaagggtcacttggttgtgtatgtaggtgagaactataagagatttgtcatcaagattggattactccatcatccacttttcaagg |
41010979 |
T |
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| Q |
124 |
ccttgttggatcaagctcaagaagagtatgatttcatggctgattcaaaactatgtattccttgtgatgaacatcttttcctaagtgt |
211 |
Q |
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| T |
41010978 |
ccttgttggaacaagctcgagaagaatatgatttcattgcagattctaaactttgtattccatgtaatgaacatcttttccttagtgt |
41010891 |
T |
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