View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1556R-Insertion-8 (Length: 613)

Name: NF1556R-Insertion-8
Description: NF1556R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1556R-Insertion-8
NF1556R-Insertion-8
[»] chr5 (4 HSPs)
chr5 (350-613)||(8586813-8587076)
chr5 (191-286)||(8586653-8586748)
chr5 (8-158)||(8586486-8586640)
chr5 (492-566)||(16125778-16125852)
[»] chr2 (2 HSPs)
chr2 (351-559)||(3013339-3013546)
chr2 (448-613)||(556029-556194)
[»] chr8 (1 HSPs)
chr8 (450-595)||(31942740-31942885)
[»] chr3 (1 HSPs)
chr3 (451-562)||(39021357-39021465)
[»] chr6 (1 HSPs)
chr6 (351-551)||(29412877-29413076)
[»] chr1 (2 HSPs)
chr1 (448-561)||(47789644-47789756)
chr1 (521-566)||(26555351-26555396)
[»] chr4 (1 HSPs)
chr4 (446-559)||(324290-324404)


Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 350 - 613
Target Start/End: Original strand, 8586813 - 8587076
Alignment:
Q  350 gtggtgtaatttatacaaagaaacgacatagacaaccaaaaatgaaaagcaaaagagaaacatggtttatgggtgttcaaccatcaccacgagtggagct 449  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8586813 gtggtgtaacttatacaaagaaacgacatagacaaccaaaaatgaaaagcaaaagagaaacatggtttatgggtgttcaaccatcaccacgagtggagct 8586912  T
Q  450 taatactatcgagaagttgatcttgaaaagacactttgttgctgaaaattctcgaactacactccttccatatgacccaaagacaggccaaccaaaccac 549  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8586913 taatactatcgagaagttgatcttgagaagacactttgttgctgaaaattctcgaactacactcctttcatatgacccaaagacaggccaaccaaaccac 8587012  T
Q  550 ctaaaaacaagaacaaacattcttcatgaaagcatacacgccaaaaggttgttgggcgtgacat 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8587013 ctaaaaacaagaacaaacattcttcatgaaagcatacacgccaaaaggttgttgggcgtgacat 8587076  T

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Target: chr5; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 191 - 286
Target Start/End: Original strand, 8586653 - 8586748
Alignment:
Q  191 gcatgggttatttattattctatcttctagcactttttatggaaccaaacacacgatatattaaaattcataccagttaaccacaagatgtgtcta 286  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8586653 gcatgggttatttattattctatcttttagcaatttttatggaaccaaacacacgatatattaaaattcataccagttaaccacaagatgtgtcta 8586748  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 8 - 158
Target Start/End: Original strand, 8586486 - 8586640
Alignment:
Q  8 agaatattgttgagaagtttttagtaggttt-------ttaaaatgaaattattgattgagta-ctcctaaggttcaaatgctacataatgattaaagaa 99  Q
    |||||||||||||||||||||||||||||||       |||||||||||||||||| | |||| ||| ||||||||||||||||||||||||||||||||    
T  8586486 agaatattgttgagaagtttttagtaggtttgtgtattttaaaatgaaattattgaat-agtatctcttaaggttcaaatgctacataatgattaaagaa 8586584  T
Q  100 aa-gagttgttatatgtattttgatgcaaacacaaatattctatctcttagcacttttta 158  Q
    |  |||||||||||| ||    |||||||||||||||||||||||| |||||||||||||    
T  8586585 agtgagttgttatattta----gatgcaaacacaaatattctatcttttagcacttttta 8586640  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 492 - 566
Target Start/End: Original strand, 16125778 - 16125852
Alignment:
Q  492 tgaaaattctcgaactacactccttccatatgacccaaagacaggccaaccaaaccacctaaaaacaagaacaaa 566  Q
    |||||| ||||||| |||  || ||| | ||||| |||||||||||||||||||| |||||||| |||| |||||    
T  16125778 tgaaaactctcgaattacgttctttcgaaatgacacaaagacaggccaaccaaacaacctaaaagcaagcacaaa 16125852  T

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Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 351 - 559
Target Start/End: Complemental strand, 3013546 - 3013339
Alignment:
Q  351 tggtgtaatttatacaaagaaacgacatagacaaccaaaaatgaaaagcaaaagagaaacatggtttatgggtgttcaaccatcaccacgagtggagctt 450  Q
    ||||||||  ||||| |||| |||||||| || ||||| ||| |||| |||||||||||| || | |||| || || | ||| ||||| || || |||||    
T  3013546 tggtgtaacctataccaagagacgacataaaccaccaataat-aaaatcaaaagagaaacctgatatatgcgtctttagccaccaccaagaatgaagctt 3013448  T
Q  451 aatactatcgagaagttgatcttgaaaagacactttgttgctgaaaattctcgaactacactccttccatatgacccaaagacaggccaaccaaaccacc 550  Q
    ||||||||||||||||||||| | | ||||||| |||| |||||||||| ||||  | | ||||||||||||| |||||||| ||||| |||| ||||||    
T  3013447 aatactatcgagaagttgatccttagaagacacgttgtcgctgaaaattttcgagttccgctccttccatatggcccaaagaaaggcctaccacaccacc 3013348  T
Q  551 taaaaacaa 559  Q
    | |||||||    
T  3013347 tgaaaacaa 3013339  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 448 - 613
Target Start/End: Original strand, 556029 - 556194
Alignment:
Q  448 cttaatactatcgagaagttgatcttgaaaagacactttgttgctgaaaattctcgaactacactccttccatatgacccaaagacaggccaaccaaacc 547  Q
    ||||||||||| |||||| |||||   |||| |||  || ||||||||| |||||||  | |  |||||||| |||||  ||||||| |||| ||| |||    
T  556029 cttaatactattgagaagatgatccataaaaaacatgttattgctgaaagttctcgagttccgatccttccaaatgacttaaagacaagccagccacacc 556128  T
Q  548 acctaaaaacaagaacaaacattcttcatgaaagcatacacgccaaaaggttgttgggcgtgacat 613  Q
    |||| ||||||||||| ||  | |||| ||||| ||| |  ||||||| ||||||| |||||||||    
T  556129 acctgaaaacaagaacgaatgtccttcctgaaaacatgcgtgccaaaaagttgttgtgcgtgacat 556194  T

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Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 450 - 595
Target Start/End: Complemental strand, 31942885 - 31942740
Alignment:
Q  450 taatactatcgagaagttgatcttgaaaagacactttgttgctgaaaattctcgaactacactccttccatatgacccaaagacaggccaaccaaaccac 549  Q
    |||||||||||||||||||||  | | |||| || ||||||||||||||||||||  | | |||||||||  |||||||||||| ||||||||| |||||    
T  31942885 taatactatcgagaagttgattcttagaagatacattgttgctgaaaattctcgagtttcgctccttccaattgacccaaagacgggccaaccacaccac 31942786  T
Q  550 ctaaaaacaagaacaaacattcttcatgaaagcatacacgccaaaa 595  Q
    |  ||||||||||| ||  |||||| ||||||||| ||||||||||    
T  31942785 ccgaaaacaagaacgaatgttcttcgtgaaagcatgcacgccaaaa 31942740  T

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Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 451 - 562
Target Start/End: Complemental strand, 39021465 - 39021357
Alignment:
Q  451 aatactatcgagaagttgatcttgaaaagacactttgttgctgaaaattctcgaactacactccttccatatgacccaaagacaggccaaccaaaccacc 550  Q
    |||||||||||||||||| || | ||||||||   |||||||||||||||||||  | | |||||||||||||||||||||||||| || ||| ||||||    
T  39021465 aatactatcgagaagttggtccttaaaagaca---tgttgctgaaaattctcgagttccgctccttccatatgacccaaagacaggtcagccacaccacc 39021369  T
Q  551 taaaaacaagaa 562  Q
    ||||||||||||    
T  39021368 taaaaacaagaa 39021357  T

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Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 351 - 551
Target Start/End: Original strand, 29412877 - 29413076
Alignment:
Q  351 tggtgtaatttatacaaagaaacgacatagacaaccaaaaatgaaaagcaaaagagaaacatggtttatgggtgttcaaccatcaccacgagtggagctt 450  Q
    |||||||| ||||||||||| ||||||||||| ||||| |||||||| |||||| |||||  |||| ||| ||  | | ||| ||||| || |  ||| |    
T  29412877 tggtgtaacttatacaaagagacgacatagaccaccaataatgaaaatcaaaagcgaaacccggttaatgtgtcattagccaccaccaagaat-aagcat 29412975  T
Q  451 aatactatcgagaagttgatcttgaaaagacactttgttgctgaaaattctcgaactacactccttccatatgacccaaagacaggccaaccaaaccacc 550  Q
    |||||||||||||| || ||| | | ||||||| |||||| ||||||||| |||| | | |||||| || |||||||||||||| | || ||| ||||||    
T  29412976 aatactatcgagaaatttatccttagaagacacgttgttgttgaaaattcccgaatttctctcctttcaaatgacccaaagacatgtcagccacaccacc 29413075  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 448 - 561
Target Start/End: Complemental strand, 47789756 - 47789644
Alignment:
Q  448 cttaatactatcgagaagttgatcttgaaaagacactttgttgctgaaaattctcgaactacactccttccatatgacccaaagacaggccaaccaaacc 547  Q
    |||||||||| ||||||||||||| | | ||||||  |||| | |||||||||||||  | | ||||||||| |||||| ||||||| | || ||| |||    
T  47789756 cttaatactagcgagaagttgatccttagaagacatgttgtcgttgaaaattctcgagttcctctccttcca-atgacctaaagacatgtcagccacacc 47789658  T
Q  548 acctaaaaacaaga 561  Q
    |||| |||||||||    
T  47789657 acctgaaaacaaga 47789644  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 521 - 566
Target Start/End: Original strand, 26555351 - 26555396
Alignment:
Q  521 atgacccaaagacaggccaaccaaaccacctaaaaacaagaacaaa 566  Q
    ||||||||||||||| |||||||||| || | ||||||||||||||    
T  26555351 atgacccaaagacagaccaaccaaacaacttgaaaacaagaacaaa 26555396  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 446 - 559
Target Start/End: Complemental strand, 324404 - 324290
Alignment:
Q  446 agcttaatactatcgagaagttgatcttgaaaagacactttgttgctgaaaattctcgaactacactccttccatatga-cccaaagacaggccaaccaa 544  Q
    |||||||| | ||| ||||||||||  |  |||||||| |||||  ||||||||| |||  ||  |||||||||||||| |||||||| ||||||||||     
T  324404 agcttaatgccatcaagaagttgattctttaaagacacgttgttcttgaaaattcccgagttatgctccttccatatgaccccaaagataggccaaccac 324305  T
Q  545 accacctaaaaacaa 559  Q
    || |||| |||||||    
T  324304 actacctgaaaacaa 324290  T

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