View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1556R-Insertion-9 (Length: 537)

Name: NF1556R-Insertion-9
Description: NF1556R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1556R-Insertion-9
NF1556R-Insertion-9
[»] chr8 (3 HSPs)
chr8 (7-212)||(15049567-15049778)
chr8 (479-537)||(15050046-15050104)
chr8 (298-354)||(15049865-15049921)
[»] chr3 (3 HSPs)
chr3 (86-212)||(1653996-1654123)
chr3 (298-345)||(1653874-1653921)
chr3 (20-86)||(52991569-52991636)
[»] chr1 (2 HSPs)
chr1 (19-212)||(26841526-26841723)
chr1 (305-352)||(26841807-26841854)
[»] scaffold0092 (1 HSPs)
scaffold0092 (482-537)||(23311-23366)
[»] chr6 (1 HSPs)
chr6 (484-523)||(30845559-30845598)
[»] chr5 (1 HSPs)
chr5 (484-523)||(26331071-26331110)
[»] chr4 (1 HSPs)
chr4 (484-537)||(12469363-12469416)


Alignment Details
Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 7 - 212
Target Start/End: Original strand, 15049567 - 15049778
Alignment:
Q  7 cagaaagaatgtgttcttggtgcgttcttgttttttccggtgggtactccgacggctgggttttccaatatcgtagcttgt------ggtggttttcaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||      |||||||||||||    
T  15049567 cagaaagaatgtgttcttggtgcgttcttgttttttccggtgggtactccgacggctgcgttttccaatatcgtagcttgtggttgtggtggttttcaag 15049666  T
Q  101 gtggtttttgatggtttcttcatctcctctatacgtttccatggtttgttttagtggtgttcagatatgttccatttatggctattttcgagctagtttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15049667 gtggtttttgatggtttcttcatctcctctatacgtttccatggtttgttttagtggttttcagatatgttccatttatggctattttcgagctagtttt 15049766  T
Q  201 tggtgggttaag 212  Q
    ||||||||||||    
T  15049767 tggtgggttaag 15049778  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 479 - 537
Target Start/End: Original strand, 15050046 - 15050104
Alignment:
Q  479 ggctatgttggtttctggtgcttcgtggtggtttcaatggtggtgctggtactaggtct 537  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15050046 ggctatgttggtttgtggtgcttcgtggtggtttcaatggtggtgctggtactaggtct 15050104  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 298 - 354
Target Start/End: Original strand, 15049865 - 15049921
Alignment:
Q  298 tgcgccggtgagaggtcgttatgggggtggtggttaatggttcactagtcggccata 354  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15049865 tgcgtcggtgagaggtcgttatgggggtggtggttaatggttcactagtcggccata 15049921  T

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Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 86 - 212
Target Start/End: Complemental strand, 1654123 - 1653996
Alignment:
Q  86 gtggtggttttcaaggtggtttttgatggtttcttcatctcctctatacg-tttccatggtttgttttagtggtgttcagatatgttccatttatggcta 184  Q
    ||||||||||| |||||| ||| || ||||||||||||||||||| || | |||||||||| ||||| ||||||||||||||||||||| |||||||||     
T  1654123 gtggtggtttttaaggtgatttgtggtggtttcttcatctcctctgtatggtttccatggtgtgtttgagtggtgttcagatatgttccttttatggctg 1654024  T
Q  185 ttttcgagctagtttttggtgggttaag 212  Q
    |||||||||| |||||||||||||||||    
T  1654023 ttttcgagcttgtttttggtgggttaag 1653996  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 1653921 - 1653874
Alignment:
Q  298 tgcgccggtgagaggtcgttatgggggtggtggttaatggttcactag 345  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||    
T  1653921 tgcgccagtgagaggtcgttatgggggtggtcgttaatggttcactag 1653874  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 52991569 - 52991636
Alignment:
Q  20 ttcttggtgcgttcttgttttttccggtgggtactccgacggctggg-ttttccaatatcgtagcttg 86  Q
    |||||||||| ||||||||||||||||||| | |  || |||||||| |||| |||||||||||||||    
T  52991569 ttcttggtgcattcttgttttttccggtggttgcgtcggcggctgggttttttcaatatcgtagcttg 52991636  T

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Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 26841526 - 26841723
Alignment:
Q  19 gttcttggtgcgttcttgttttttccggtgggtactccgacggctgggttttc-caatatcgtagcttg------tggtggttttcaaggtggtttttga 111  Q
    |||||||||| |||||||||||| ||| ||| | | ||| ||||||| ||||  |||||||||||||||      |||| |||||||||| ||||| ||     
T  26841526 gttcttggtgtgttcttgttttt-ccgatggttgcgccggcggctggattttttcaatatcgtagcttgcggttgtggttgttttcaaggcggtttctgg 26841624  T
Q  112 tggtttcttcatctcctctatacg-tttccatggtttgttttagtggtgttcagatatgttccatttatggctattttcgagctagtttttggtgggtta 210  Q
    |||| |||||||||||||| |||| ||| |||||||||||| |||||||||   ||||||||| ||||||||| |||||||| |||||||||||||||||    
T  26841625 tggtctcttcatctcctctgtacggttttcatggtttgtttcagtggtgtt---atatgttccttttatggctgttttcgagatagtttttggtgggtta 26841721  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 26841807 - 26841854
Alignment:
Q  305 gtgagaggtcgttatgggggtggtggttaatggttcactagtcggcca 352  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  26841807 gtgagaggtcgttatgagggtggtggttaatggttcactagccggcca 26841854  T

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Target: scaffold0092 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 537
Target Start/End: Complemental strand, 23366 - 23311
Alignment:
Q  482 tatgttggtttctggtgcttcgtggtggtttcaatggtggtgctggtactaggtct 537  Q
    |||||| |||| |||||||| ||||||||||| |||||||||||| ||||||||||    
T  23366 tatgttcgtttgtggtgctttgtggtggtttccatggtggtgctgatactaggtct 23311  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 523
Target Start/End: Complemental strand, 30845598 - 30845559
Alignment:
Q  484 tgttggtttctggtgcttcgtggtggtttcaatggtggtg 523  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  30845598 tgttggtttatggtgcttcgtggtggtttccatggtggtg 30845559  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 523
Target Start/End: Original strand, 26331071 - 26331110
Alignment:
Q  484 tgttggtttctggtgcttcgtggtggtttcaatggtggtg 523  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  26331071 tgttggtttgtggtgcttcgtggtggtttctatggtggtg 26331110  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 537
Target Start/End: Original strand, 12469363 - 12469416
Alignment:
Q  484 tgttggtttctggtgcttcgtggtggtttcaatggtggtgctggtactaggtct 537  Q
    ||||||||| |||| |||| |||||||| | |||||||||||| ||||||||||    
T  12469363 tgttggtttgtggtccttcatggtggttaccatggtggtgctgatactaggtct 12469416  T

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