View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1556_high_12 (Length: 210)

Name: NF1556_high_12
Description: NF1556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1556_high_12
NF1556_high_12
[»] chr8 (1 HSPs)
chr8 (9-192)||(11484109-11484292)
[»] chr5 (5 HSPs)
chr5 (128-169)||(26798336-26798377)
chr5 (128-161)||(26801252-26801285)
chr5 (128-161)||(26808802-26808835)
chr5 (128-161)||(26816192-26816225)
chr5 (128-161)||(26823829-26823862)
[»] chr3 (4 HSPs)
chr3 (128-169)||(10218865-10218906)
chr3 (128-169)||(10255774-10255815)
chr3 (128-161)||(10227875-10227908)
chr3 (130-170)||(10499740-10499780)


Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 11484292 - 11484109
Alignment:
Q  9 aggagcagagactcaagaagactttgatatgaatgaattgaaaatgataacagtactgtttttgggtggttggcaatgcatatggttggatgaatgaata 108  Q
    ||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  11484292 aggagcaaagactcaagaagacttggatatgaatgaattgataatgataacagtactatttttgggtggttggcaatgcatatagttggatgaatgaata 11484193  T
Q  109 gtagtcataataattgtatctacatctgacaaaataataattatacaaagaaaagttgcacaattttcatctttgaagtttcaa 192  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11484192 gtagtaataataattgtatctacatctgacaaaataataaatatacaaagaaaagttgcacaattttcatctttgaagtttcaa 11484109  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 26798377 - 26798336
Alignment:
Q  128 ctacatctgacaaaataataattatacaaagaaaagttgcac 169  Q
    ||||||||||||||||||||| |||||||||||| |||||||    
T  26798377 ctacatctgacaaaataataaatatacaaagaaatgttgcac 26798336  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 26801285 - 26801252
Alignment:
Q  128 ctacatctgacaaaataataattatacaaagaaa 161  Q
    ||||||||||||||||||||| ||||||||||||    
T  26801285 ctacatctgacaaaataataaatatacaaagaaa 26801252  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 26808835 - 26808802
Alignment:
Q  128 ctacatctgacaaaataataattatacaaagaaa 161  Q
    ||||||||||||||||||||| ||||||||||||    
T  26808835 ctacatctgacaaaataataaatatacaaagaaa 26808802  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 26816225 - 26816192
Alignment:
Q  128 ctacatctgacaaaataataattatacaaagaaa 161  Q
    ||||||||||||||||||||| ||||||||||||    
T  26816225 ctacatctgacaaaataataaatatacaaagaaa 26816192  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 26823862 - 26823829
Alignment:
Q  128 ctacatctgacaaaataataattatacaaagaaa 161  Q
    ||||||||||||||||||||| ||||||||||||    
T  26823862 ctacatctgacaaaataataaatatacaaagaaa 26823829  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 10218906 - 10218865
Alignment:
Q  128 ctacatctgacaaaataataattatacaaagaaaagttgcac 169  Q
    ||||||||||||||||||||| |||||||||||| |||||||    
T  10218906 ctacatctgacaaaataataaatatacaaagaaatgttgcac 10218865  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 10255815 - 10255774
Alignment:
Q  128 ctacatctgacaaaataataattatacaaagaaaagttgcac 169  Q
    ||||||||||||||||||||| |||||||||||| |||||||    
T  10255815 ctacatctgacaaaataataaatatacaaagaaatgttgcac 10255774  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 10227908 - 10227875
Alignment:
Q  128 ctacatctgacaaaataataattatacaaagaaa 161  Q
    ||||||||||||||||||||| ||||||||||||    
T  10227908 ctacatctgacaaaataataaatatacaaagaaa 10227875  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 10499780 - 10499740
Alignment:
Q  130 acatctgacaaaataataattatacaaagaaaagttgcaca 170  Q
    ||||||||| ||||||||| |||||||||||||||| ||||    
T  10499780 acatctgactaaataataaatatacaaagaaaagtttcaca 10499740  T

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