View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1556_high_4 (Length: 319)
Name: NF1556_high_4
Description: NF1556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1556_high_4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 879554 - 879872
Alignment:
| Q |
1 |
tcaacacatacacatagcagcaaaatcttccctctgctaataaagctttggaacagttaattagatagacctgatcttgaagttcaaataaatcattatt |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||| |
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| T |
879554 |
tcaacacatacacatagcagcaaaatattccctctgctaataaagctttggaacagttaattacaaagacctgatcttgaagtttaaataaatcattatt |
879653 |
T |
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| Q |
101 |
tacaaggatccctcttcacacggtccaaccctgaatgtttgttaacttaacaatggccggccatcgaacacttgcttgctacatttaccattttaagttc |
200 |
Q |
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| T |
879654 |
tacaaggatccctcttcacacggtccaaccctgaatgtttgttaacttaacaatggccggccatcgaacacttgcttgctacatttaccattttaagttc |
879753 |
T |
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| Q |
201 |
tgcaaaaagaagaatcacaagactaaataatagtatgacctggtcttgctgttataataatgaaaaggatacactcggtctaacctctgaactagtcgat |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
879754 |
tgcaaagagaagaatcacaagactaaataatagtatgacctggtcttgctgttataataatgaaaaggatacactcggtctaacctctgaactagtcgat |
879853 |
T |
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| Q |
301 |
gtacaacattattcattca |
319 |
Q |
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||||||||||||||||||| |
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| T |
879854 |
gtacaacattattcattca |
879872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 1161682 - 1161408
Alignment:
| Q |
1 |
tcaacacatacacatagcagcaaaatcttccctctgctaataaagctttggaacagttaattagatagacctgatcttgaagttcaaataaatcattatt |
100 |
Q |
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||||||||||||||||||||||||| ||||||| ||||| |||||| ||||||||||||| | |||||||||||||||||| ||||||||||||||| |
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| T |
1161682 |
tcaacacatacacatagcagcaaaacattccctcggctaactaagcttaagaacagttaattacaaagacctgatcttgaagtttaaataaatcattatt |
1161583 |
T |
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| Q |
101 |
tacaaggatccctcttcacacg-gtccaaccctgaatgtttgttaacttaacaatggccggccatcgaacacttgcttgctacatttaccattttaagtt |
199 |
Q |
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|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||| |
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| T |
1161582 |
cacaaggatccctcttcacacaagtccaaccctgaatgattgttaacttaacaatggccggacatcgaacagttgcttgctacacttaccattttaagtt |
1161483 |
T |
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| Q |
200 |
ctgcaaaaagaagaatcacaagactaaataatagtatgacct---ggtcttgctgttataataatgaaaaggatac |
272 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
1161482 |
ctgcaaagagaagaatcacaagact-aataatagtatgacctgtaggtcttgctgttaaaataatgaaaaggatac |
1161408 |
T |
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