View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1556_high_5 (Length: 278)
Name: NF1556_high_5
Description: NF1556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1556_high_5 |
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| [»] scaffold1432 (1 HSPs) |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: scaffold1432 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold1432
Description:
Target: scaffold1432; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 1601 - 1339
Alignment:
| Q |
16 |
tattttagtagtttgtatcgggtgtgtttggtatttgaaagtgacttggtttagtagtacagtattttgagtaattggattatagcggctttagctaaat |
115 |
Q |
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| T |
1601 |
tattttagtagtttgtatcgggtgtgtttggtatttgaaagtgacttggtttagtagtacagtattttgagtaattggattatagcggctttagctaaat |
1502 |
T |
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| Q |
116 |
tcagcatcctcttggccttacaagtaaaatttctaacaataaaaataaccgaaccctatcctttctcaatctctgctcttccattctcttcgaaatctag |
215 |
Q |
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| T |
1501 |
tcagcatcctcttggccttacaagtaaaatttcaaacaataaaaataaccgaaccctatcctctctcaatctctgctcttccattctctttgacatctag |
1402 |
T |
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| Q |
216 |
tgtacgttggcggcgtttcaagttgccattccatgtatacgacacttctctatgcacgatttc |
278 |
Q |
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| T |
1401 |
tgtacgttggcgccttttcaagttgccattccatgtatacgacacttctctatgcgcgatttc |
1339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 21777 - 22025
Alignment:
| Q |
16 |
tattttagtagtttgtatcgggtgtgtttggtatttgaaagtgacttggtttagtagtacagtattttgagtaattggattatagcggctttagctaaat |
115 |
Q |
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| T |
21777 |
tattttagtagtttgtatcgggtgtgtttggtatttgaaagtgatttggtttact-----agtattttgagtaattggattatagcggctttagctaaat |
21871 |
T |
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| Q |
116 |
tcagcatcctcttggccttacaagtaaaatttctaacaataaaaataaccgaaccctatcctttctcaatctctgctcttccattctcttcgaaatctag |
215 |
Q |
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||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||| ||||||||| ||| ||| |||||| |
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| T |
21872 |
tcaccatcctcttggccttacaagtaaaatttcaaacaataaaaataactgaaccctagtctttctcaatctctgatcttccattttctacgacatctag |
21971 |
T |
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| Q |
216 |
tgtacgttggcggcgtttcaagttgccattccatgtatacgacacttctctatg |
269 |
Q |
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| T |
21972 |
tgtacgttagtgccttttcaagttgccattccatgtgcacgacacttctctatg |
22025 |
T |
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