View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1556_high_6 (Length: 266)
Name: NF1556_high_6
Description: NF1556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1556_high_6 |
 | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 20133635 - 20133878
Alignment:
| Q |
7 |
tccaagaaaattcgatcttgaattgtaattgataaacgataagccattcgtaatagtgtttcatagttgggagagaaacttattttaaaccatatatatt |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20133635 |
tccaataaaattcgatcttgaattgtaattgataaatgataagccattcgtaatagtgtttcgtagttgggagagaaacttattttaaaccatatatatt |
20133734 |
T |
|
| Q |
107 |
cgataacgaaaggcagtaacagaattctcataaaatttaaaaacctcgtattgtaaaacggagaaacacatatgttctaccgcacgaaccaaaagtaacc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
20133735 |
tgataacgaaaggcagtaacagaattctcataaaatttaaaaccctcttatcgtaaaacggagaaacacatatgttctaccgcacgaaccaaaggcaact |
20133834 |
T |
|
| Q |
207 |
aaattcataaagtgaaatcgaaagccatacatttcactgataac |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20133835 |
aaattcataaagtgaaatcgaaagccatacatttcactgataac |
20133878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 1651 - 1865
Alignment:
| Q |
13 |
aaaattcgatcttgaattgtaattgataaacgataagccattcgtaatagtgtttcatagttgggagagaaacttattttaaaccatatatattcgataa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1651 |
aaaattcgatcttgaattgtaattgataaacgttaagccattcataatagtgtttcatagttgggagagaaacttattttaaaccatatatattcgataa |
1750 |
T |
|
| Q |
113 |
cgaaaggcagtaacagaattctcataaaatttaaaaacctcgtattgtaaaacggagaaacacatatgttctaccgcacgaaccaaaagtaaccaaattc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||| |||||||||||| | ||| |||||| |
|
|
| T |
1751 |
cgaaaggcagtaacagaattctcataaaatttaaaaccctcgtatcgtaaaacggagaa----atatgttctactgcacgaaccaaaggcaactaaattc |
1846 |
T |
|
| Q |
213 |
ataaagtgaaatcgaaagc |
231 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1847 |
ataaagtgaaatcgaaagc |
1865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 44358436 - 44358193
Alignment:
| Q |
7 |
tccaagaaaattcgatcttgaattgtaattgataaacgataagccattcgtaatagtgtttcatagttgggagagaaacttattttaaaccatatatatt |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44358436 |
tccaataaaattcgatcttgaattgtaattgataaatgataagccattcgtaatagtgtttcgtagttgggagagaaacttattttaaaccatatatatt |
44358337 |
T |
|
| Q |
107 |
cgataacgaaaggcagtaacagaattctcataaaatttaaaaacctcgtattgtaaaacggagaaacacatatgttctaccgcacgaaccaaaagtaacc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
44358336 |
tgataacgaaaggcagtaacagaattctcataaaatttaaaaccctcttatcgtaaaacggagaaacacatatgttctaccgcacgaaccaaaggcaact |
44358237 |
T |
|
| Q |
207 |
aaattcataaagtgaaatcgaaagccatacatttcactgataac |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44358236 |
aaattcataaagtgaaatcgaaagccatacatttcactgataac |
44358193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 135103 - 135289
Alignment:
| Q |
13 |
aaaattcgatcttgaattgtaattgataaacgataagccattcgtaatagtgtttcatagttgggagagaaacttattttaaaccatatatattcgataa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
135103 |
aaaattcgatcttgaattgtaattgataaacgataagccattcgtaatagtgtttcatagttgggagagaaacttattttaaaccatatatattcgataa |
135202 |
T |
|
| Q |
113 |
cgaaaggcagtaacagaattctcataaaatttaaaaacctcgtattgtaaaacggagaaacacatatgttctaccgcacgaaccaaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
135203 |
cgaaaggcagtaacagaattctcataaaatttaaaaccctcgtatcgtaaaacggagaaacacatatgttctaccgcacgaaccaaa |
135289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University