View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1556_high_9 (Length: 244)
Name: NF1556_high_9
Description: NF1556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1556_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 28403085 - 28403317
Alignment:
| Q |
1 |
taagctaaatattttgccaaaaaagaaagtaattcatctaggcaagtagttaattt----attaaataattagataaatgttacattgacaacgtaatat |
96 |
Q |
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| T |
28403085 |
taagctaaatattttgccaaaaaagaaagtaattcatctaggcaagtagttaatttatttattaaataattagataaatgttacattaacaacgtaatat |
28403184 |
T |
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| Q |
97 |
agttttcttttttaaggacaacgcaatatagttgaaaataatgcaaaacatgtgtaacaaatgaaggaaaaacaaatcaaagtagttaaaccaatttgaa |
196 |
Q |
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| T |
28403185 |
agttttcttttttaaggacaacgcaatatagttgaaaataatgcaaaacatgtgtaacaaattaaggaaaaacaaatcaaagtagttaaaccaatttgaa |
28403284 |
T |
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| Q |
197 |
tcttcttcaagaatatctctgaatctctgtgct |
229 |
Q |
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| T |
28403285 |
tcttcttcaagaatatctctgaatctctgtgct |
28403317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 32835534 - 32835438
Alignment:
| Q |
1 |
taagctaaatattttgccaaaaaagaaagtaattcatctaggcaagtagttaatttattaaataattagataaatgttacattgacaacgtaatata |
97 |
Q |
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| T |
32835534 |
taagcttaatattttgccaaaaaagaaagcaattcagctagacaaatagttactttattaaataattagctaaaagttaaattaacaacgcaatata |
32835438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 32835450 - 32835363
Alignment:
| Q |
114 |
acaacgcaatatagttgaaaataatgcaaaacatgtgtaacaaatgaaggaaaaacaaatcaaagtagttaaaccaatttgaatcttc |
201 |
Q |
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| T |
32835450 |
acaacgcaatatattttaaaattattcaaaatatgtgtaacaaattaaggaaaaaataatgaaaatacttgagccaatttgaaacttc |
32835363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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