View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1556_low_1 (Length: 1023)
Name: NF1556_low_1
Description: NF1556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1556_low_1 |
 | |
|
| [»] chr5 (8 HSPs) |
| |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 621 - 1023
Target Start/End: Complemental strand, 33808213 - 33807814
Alignment:
| Q |
621 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
720 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33808213 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa |
33808116 |
T |
|
| Q |
721 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccttcaggtggacc |
820 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33808115 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
33808016 |
T |
|
| Q |
821 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
920 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33808015 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
33807916 |
T |
|
| Q |
921 |
tatgtgagtgaggattgtgttgtggtgtggtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttcttat |
1020 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807915 |
tatgtgagtgaggattgtgttgtggtgt-gtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttcttat |
33807817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 621 - 1023
Target Start/End: Complemental strand, 33811867 - 33811468
Alignment:
| Q |
621 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
720 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33811867 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa |
33811770 |
T |
|
| Q |
721 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccttcaggtggacc |
820 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33811769 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
33811670 |
T |
|
| Q |
821 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
920 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811669 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
33811570 |
T |
|
| Q |
921 |
tatgtgagtgaggattgtgttgtggtgtggtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttcttat |
1020 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811569 |
tatgtgagtgaggattgtgttgtggtgt-gtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttcttat |
33811471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 621 - 1023
Target Start/End: Complemental strand, 33816785 - 33816386
Alignment:
| Q |
621 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
720 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33816785 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa |
33816688 |
T |
|
| Q |
721 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccttcaggtggacc |
820 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33816687 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
33816588 |
T |
|
| Q |
821 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
920 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816587 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
33816488 |
T |
|
| Q |
921 |
tatgtgagtgaggattgtgttgtggtgtggtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttcttat |
1020 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816487 |
tatgtgagtgaggattgtgttgtggtgt-gtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttcttat |
33816389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 284; E-Value: 1e-158
Query Start/End: Original strand, 223 - 538
Target Start/End: Complemental strand, 6306817 - 6306502
Alignment:
| Q |
223 |
ttggaatatttattggttactgcattattgatgctgttagatagcaaagagttatcagaccaatgatacatgatactagagacttgttttgaactaatcg |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
6306817 |
ttggaatatttattggttactgcattattgatgttgttagatagtaaagagttatcagaccaatgatacatgatactagagacttgttatgaactgatcg |
6306718 |
T |
|
| Q |
323 |
caaaatatttgtatgccttctatcatttctgcaccaaattaggcatcagcatataggttatgatagtattatccaacaataacgtcattgtttatcctcc |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6306717 |
caaaatatttgtatgccttctatcatttctgcaccaaattagacatcagcatataggttatgatagtattatccaacaataacgtcattgtttaccctcc |
6306618 |
T |
|
| Q |
423 |
aaactgaggaattgttatggaacagcctgaaagtgcaacataaatcttcaaaggcaaaaacaaatggagtggaaaattgggagagaataaattcaaaacc |
522 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6306617 |
aaactgaggaattgttatggagcagcctgaaagtgcaacataaatcttcaaaggcaaaaacaaatggagtggaaaattgggagagaagaaattcaaaacc |
6306518 |
T |
|
| Q |
523 |
agtagcaaaatcagtc |
538 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
6306517 |
agtagcaaaatcagtc |
6306502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 6316818 - 6316708
Alignment:
| Q |
20 |
aagtatagttaaataggcgtttaagctagagaagtggccaacttacccaacagattcagtgtcaagtgacacaaaatctgcaatactactatgacaagta |
119 |
Q |
| |
|
||||||||||||||||| || ||| ||||||| ||||||||| ||||||| |||||| ||||| ||| |||||| ||||| |||| | ||| ||||||| |
|
|
| T |
6316818 |
aagtatagttaaatagggattaaagttagagaaatggccaactcacccaaccgattcaatgtcaggtggcacaaagtctgctataccagtataacaagta |
6316719 |
T |
|
| Q |
120 |
tagccagagta |
130 |
Q |
| |
|
||||| ||||| |
|
|
| T |
6316718 |
tagcccgagta |
6316708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 584 - 620
Target Start/End: Complemental strand, 6306499 - 6306463
Alignment:
| Q |
584 |
cattagtggttagtatgtggactatttttcttaaaaa |
620 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6306499 |
cattagtggttagtatgtggactatttttcttaaaaa |
6306463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 704 - 799
Target Start/End: Complemental strand, 16698601 - 16698504
Alignment:
| Q |
704 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
799 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| || ||||||| | ||||||| | ||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
16698601 |
aattttagtgtggaaatccttctcaatgtgagaaagggaaaaattatgggacccttggacctcttaaaacttccactataatgataatgggaatacaa |
16698504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 704 - 799
Target Start/End: Original strand, 22763905 - 22764002
Alignment:
| Q |
704 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
799 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| || ||||||||||||||||| | |||||||||| | | ||||||| ||||||||||||||| |
|
|
| T |
22763905 |
aattttagcatggaaaaccttctcaatatgagaaagggaaaaaccacgggaccattgggcctcttaaaacttatgctataatgataatgggaatacaa |
22764002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 621 - 1016
Target Start/End: Complemental strand, 50603403 - 50603003
Alignment:
| Q |
621 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
720 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
50603403 |
tgttgggaaatgccagtacaatttctctcctccgtgaactcaaaatagacactttagcgaaaacgtaaaatgacacacaataaaattttagcgtggaaaa |
50603304 |
T |
|
| Q |
721 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccttcaggtggacc |
820 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
50603303 |
ccttctcaatgtgagtaagaaaaaaccacggaacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcacctttagatggacc |
50603204 |
T |
|
| Q |
821 |
taactatgtatctcaatttgtagatacaactctc--acaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaac |
918 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50603203 |
taactatatatctcaatttgtagatacaactctcatacaaattggctcactatatttttctct--cactcttatgaggaactttctatttttctctcaac |
50603106 |
T |
|
| Q |
919 |
tctatgtgagtgaggattg-----tgttgtggtgtggtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttgg |
1013 |
Q |
| |
|
||| ||||||||||||||| |||||||||||| || | |||||||| ||||||||||||||||||| | |||||||| ||||||||||||||| |
|
|
| T |
50603105 |
tctgtgtgagtgaggattgtgctatgttgtggtgtgtttgctttgctgaagctcttctctatttatagagagaaatgaaccgtaagcattaaatgcttgg |
50603006 |
T |
|
| Q |
1014 |
ttc |
1016 |
Q |
| |
|
||| |
|
|
| T |
50603005 |
ttc |
50603003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 620 - 871
Target Start/End: Original strand, 54967209 - 54967477
Alignment:
| Q |
620 |
atgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattt |
708 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||||||||||| |||| |||||| || | ||||| |
|
|
| T |
54967209 |
atgttgggaaatgcctgcataatttccctcctccgtcaactcaaaataggcact--agcggaaacgtgaaataaaagcgtaatgacaca-aagagaattt |
54967305 |
T |
|
| Q |
709 |
tagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctctt--aaatctccactataataataatgggaatacaa-atctt |
804 |
Q |
| |
|
|||||||||||||||||||||| |||| || |||||||||||||||||| | ||||||| ||| ||||||||||| ||||||||||||||| | ||| |
|
|
| T |
54967306 |
tagcgtggaaaaccttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaactt |
54967405 |
T |
|
| Q |
805 |
caccttcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
871 |
Q |
| |
|
|||| | ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
54967406 |
cacccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
54967477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 620 - 799
Target Start/End: Original strand, 44782523 - 44782713
Alignment:
| Q |
620 |
atgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattt |
708 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||| || | ||||| |
|
|
| T |
44782523 |
atgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaattt |
44782619 |
T |
|
| Q |
709 |
tagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
799 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| |||||||||||||||| | ||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
44782620 |
tagcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttggacctcttaaaacttccactataatgataatgggaatacaa |
44782713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 704 - 871
Target Start/End: Complemental strand, 39298908 - 39298736
Alignment:
| Q |
704 |
aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa-atc |
802 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| ||||||||| |||||||||| | |||||||||| ||||||||||| |||| |||||||||| | | |
|
|
| T |
39298908 |
aattttagtgtgaaaaaccttctcaatgtgatgaaggaaaaatcacgggacccttgtgcctcttaaacttccactataatgataaagggaatacaacaac |
39298809 |
T |
|
| Q |
803 |
ttcaccttcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
871 |
Q |
| |
|
|||||| | ||||||| ||||| ||| | |||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
39298808 |
ttcacccttaggtggatctaactacaatatatctctcaatttgtaaggac-actctcacaaattggctcactat |
39298736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 702 - 799
Target Start/End: Original strand, 18556392 - 18556491
Alignment:
| Q |
702 |
aaaattttagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
799 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||| |||||||||||||||| ||||||||||| ||||||||||| | |||| |||||||| |
|
|
| T |
18556392 |
aaaattttagcgtggaaaaccttctcaatctgagaaaggcaaaaaaccacgggaccctcgagcctcttaaacttccactataatgacaatgagaatacaa |
18556491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 773 - 877
Target Start/End: Original strand, 31725346 - 31725448
Alignment:
| Q |
773 |
tccactataataataatgggaatacaaatcttcaccttcaggtggacctaactatgtatctcaatttgtagatacaactctcacaaattggctcactata |
872 |
Q |
| |
|
|||| ||||| ||||||| |||||||||||||||| | |||||||||| || |||||||||||||||||| |||| |||||||||||| | |||||| |
|
|
| T |
31725346 |
tccaatataacaataatgagaatacaaatcttcacacttaggtggaccttacgatgtatctcaatttgtag--acaattctcacaaattgattaactata |
31725443 |
T |
|
| Q |
873 |
ttttt |
877 |
Q |
| |
|
||||| |
|
|
| T |
31725444 |
ttttt |
31725448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 704 - 799
Target Start/End: Original strand, 54979933 - 54980031
Alignment:
| Q |
704 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctctt--aaatctccactataataataatgggaatacaa |
799 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| || |||||||||||||||||| | ||||||| ||| ||||||||||| ||||||||||||||| |
|
|
| T |
54979933 |
aattttagcatggaaaaccttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaa |
54980031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 700 - 799
Target Start/End: Complemental strand, 17645897 - 17645800
Alignment:
| Q |
700 |
acaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
799 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | || |||||||||||||| | | ||| ||||||| ||||||||||| |||||| ||||||| |
|
|
| T |
17645897 |
acaaaattttagcgtggaaaaccttctcaatataa--aaaaaaaaaccacgggactcttgagcgtcttaaacttccactataatgataatgacaatacaa |
17645800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 621 - 994
Target Start/End: Original strand, 31151926 - 31152298
Alignment:
| Q |
621 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
720 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
31151926 |
tgttgggaaatgcctgcataatttccctcctctctgaactcaaaataggcactttagcggaaacataaaatgacacacaacaaaattttaatgtggaaaa |
31152025 |
T |
|
| Q |
721 |
ccttctcaatgtgagtaaggaaaa-accacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccttcaggtggac |
819 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
31152026 |
ccttctcaatgtgagtaagaaaaaaaccacgggatccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcagatggac |
31152125 |
T |
|
| Q |
820 |
ctaactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaact |
919 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31152126 |
ctaactacgtatctaaatttatagatacaactctcacaaattggcttactatatttttctctcacactcttacgaggaactctctatttttctctcaact |
31152225 |
T |
|
| Q |
920 |
ctatgtgagtgaggattgtgttgtggtgtggtttcattgctgaaactcttctctatttatagagggttttgaacc |
994 |
Q |
| |
|
| || || | ||||||||||||||| || | |||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
31152226 |
cccgaggattgtg--ttgtgttgtggtgtgattgctttgctgaagctcttctctatttatagagagatttgaacc |
31152298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 697 - 880
Target Start/End: Original strand, 1111378 - 1111564
Alignment:
| Q |
697 |
acaacaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatct-ccactataataataatgggaat |
795 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||||| | |||||||||| || ||||| | |||| ||||||||||| | | |||||||||||| |||| |
|
|
| T |
1111378 |
acaacaaaattttagtgtagaaaaccttctgaatgtaaataaggaaaaatcatgggactcataagtctcttaaatctactataataataataatgagaat |
1111477 |
T |
|
| Q |
796 |
acaaatcttcaccttcaggtggacctaactatgtatctcaatttg--tagatacaactctcacaaattggctcactatatttttctc |
880 |
Q |
| |
|
||||| |||||| | | || ||||||||||||||||||||||| |||||| | ||||||||||||| || |||||||||||| |
|
|
| T |
1111478 |
acaaactttcacccttacgtaaacctaactatgtatctcaatttgtatagatatatttctcacaaattggttccttatatttttctc |
1111564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 621 - 799
Target Start/End: Complemental strand, 22981710 - 22981524
Alignment:
| Q |
621 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgt--aaaatga-------cacacaacaaaattttag |
711 |
Q |
| |
|
|||||||||||| | || ||||||||| ||||||||||||||||| |||||| |||||||||||| ||||| | |||| | | |||||||| |
|
|
| T |
22981710 |
tgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcac--tagcggaaacgtgaaaaataagcgtaatgacac-agagaattttag |
22981614 |
T |
|
| Q |
712 |
cgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
799 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
22981613 |
cgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaa |
22981524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 704 - 799
Target Start/End: Original strand, 23806787 - 23806884
Alignment:
| Q |
704 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
799 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
23806787 |
aattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaa |
23806884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 621 - 686
Target Start/End: Original strand, 23806698 - 23806761
Alignment:
| Q |
621 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgt |
686 |
Q |
| |
|
|||||||||||| | || ||||||||| ||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
23806698 |
tgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcac--tagcggaaacgt |
23806761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 4e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 621 - 836
Target Start/End: Original strand, 29706854 - 29707069
Alignment:
| Q |
621 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
720 |
Q |
| |
|
|||||| ||||||| | ||||||| ||| |||||||||| |||||| |||||||||| ||| ||||||||||||||||||||||||||| | |||||| |
|
|
| T |
29706854 |
tgttggaaaatgcctccataatttctctcatccgtgaacttaaaatatgcactttagcaaaaatgtaaaatgacacacaacaaaattttagtgaggaaaa |
29706953 |
T |
|
| Q |
721 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccttcaggtggacc |
820 |
Q |
| |
|
|||||||||| ||||||||||| || |||||||| | || |||||||||||||||||||||||||||||| | | ||||||||||| || |||||||| |
|
|
| T |
29706954 |
ccttctcaatatgagtaaggaacaatcacgggactcatagacctcttaaatctccactataataataatggaataaaaaatcttcaccctcgggtggacc |
29707053 |
T |
|
| Q |
821 |
taactatgtatctcaa |
836 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
29707054 |
taactatgtatctcaa |
29707069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 704 - 796
Target Start/End: Complemental strand, 27642225 - 27642132
Alignment:
| Q |
704 |
aattttagcgtggaaaaccttctcaatgtgagtaagg-aaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaata |
796 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| |||| ||||| |||||| || | |||||||| |||||||||||||||||||||||| |
|
|
| T |
27642225 |
aattttggcgtgtaaaaccttctcaatgtgagaaaggaaaaaatcacggggtcctcgggtctcttaaacttccactataataataatgggaata |
27642132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 639 - 799
Target Start/End: Original strand, 26516 - 26674
Alignment:
| Q |
639 |
taatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaaccttctcaatgtgagtaa |
738 |
Q |
| |
|
|||| |||||||| |||||||||||||||| |||||||||| ||||||||||| |||| ||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
26516 |
taatctccctccttcgtgaactcaaaatagacactttagcgaaaacgtaaaataacac--aacaaaattttagggtggaaaaccttttcaatgtgagtaa |
26613 |
T |
|
| Q |
739 |
ggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
799 |
Q |
| |
|
|||||||| ||||||||| | |||||||||| |||||| |||| |||| | |||||||| |
|
|
| T |
26614 |
ggaaaaactacgggacccttgggcctcttaaacttccactctaatgataacgagaatacaa |
26674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 1e-31; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 620 - 871
Target Start/End: Original strand, 25857130 - 25857395
Alignment:
| Q |
620 |
atgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattt |
708 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||| |||||||||||| ||||||||||| |||| |||||| | ||||| |
|
|
| T |
25857130 |
atgttgggaaatgcctgcataatttccctcctccgtgaacttaaaataggcact--agcggaaacgtgaaatataagcgtaatgacacagag---aattt |
25857224 |
T |
|
| Q |
709 |
tagcgtggaaaaccttctcaatgtgag-taaggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
805 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
25857225 |
tagcgtggaaaaccttctcaatgtgagaaaaggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc |
25857324 |
T |
|
| Q |
806 |
accttcaggtggacctaact---atgtatctc--aatttgtagatacaactctcacaaattggctcactat |
871 |
Q |
| |
|
||||| ||||||| || ||| || |||||| |||||||| | ||||||||||||||||||||||| |
|
|
| T |
25857325 |
acctttaggtggatctcactacaatatatctcttaatttgtaaggaacactctcacaaattggctcactat |
25857395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 621 - 799
Target Start/End: Original strand, 4842648 - 4842837
Alignment:
| Q |
621 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgacacacaacaaaatttt |
709 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| || | |||||| |
|
|
| T |
4842648 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcac--tagcggaaacgtgaaatataagtgtaatgacaca-aagagaatttt |
4842744 |
T |
|
| Q |
710 |
agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
799 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||| |||||| | |||||||||| | ||||||||||| ||||| ||||||||| |
|
|
| T |
4842745 |
agcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacaggacccttgggcctcttaaaacttccactataatgataataggaatacaa |
4842837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 621 - 871
Target Start/End: Original strand, 4835575 - 4835840
Alignment:
| Q |
621 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatg-acac------aca-acaaaattttagc |
712 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| ||||||||||||||||||| || |||||||| |||| | || ||| | | ||||||||| |
|
|
| T |
4835575 |
tgttgggaaatgcctgcataatttccctcctccatgaactcaaaataggcact--agtggaaacgtgaaatataaacgtaatgacacagagaattttagc |
4835672 |
T |
|
| Q |
713 |
gtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttcacc |
808 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||| | |||||||||| | ||||||||||| ||||||||||| ||| | ||||||| |
|
|
| T |
4835673 |
gtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttcacc |
4835772 |
T |
|
| Q |
809 |
ttcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
871 |
Q |
| |
|
| ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
4835773 |
cttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
4835840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 712 - 881
Target Start/End: Original strand, 8252686 - 8252853
Alignment:
| Q |
712 |
cgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccttc |
811 |
Q |
| |
|
|||||||||||||||||| |||||||||| | |||||| |||||| ||||||| || || | ||||||||| ||||||||||| ||||| ||| |
|
|
| T |
8252686 |
cgtggaaaaccttctcaacgtgagtaaggta------cgggactcgtaagtctcttaactcctcaatgtaataataacgggaatacaaagcttcatcttt |
8252779 |
T |
|
| Q |
812 |
aggtggac----ctaactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctct |
881 |
Q |
| |
|
|| ||||| ||| ||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||| |
|
|
| T |
8252780 |
agatggacttaattaattatgtatctcaatttgtagatacaactatcataaattgactcactatatttttctct |
8252853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 702 - 799
Target Start/End: Original strand, 13465046 - 13465145
Alignment:
| Q |
702 |
aaaattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
799 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||| |||||| | |||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
13465046 |
aaaattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacaggacccttgggcctcttaaaacatccactataatgataatgggaatacaa |
13465145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 704 - 799
Target Start/End: Original strand, 27341025 - 27341120
Alignment:
| Q |
704 |
aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
799 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||| | ||||||||| || |||| ||| ||||||| ||||||| |
|
|
| T |
27341025 |
aattttagcgtggaaaaccttctcaatgtaagaaaggaaaaaccacgggacccttgtacctcttaaacttctactacaatgataatggaaatacaa |
27341120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 695 - 799
Target Start/End: Complemental strand, 17845969 - 17845865
Alignment:
| Q |
695 |
acacaacaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaa |
794 |
Q |
| |
|
|||||| | |||||||| ||||||||||||| ||||||||| ||||||||||||| ||||| | ||||||||| ||||||||||| ||||||| || |
|
|
| T |
17845969 |
acacaagagaattttagagtggaaaaccttcccaatgtgaggaaggaaaaaccacaggacctttggacctcttaaacttccactataatgataatggaaa |
17845870 |
T |
|
| Q |
795 |
tacaa |
799 |
Q |
| |
|
||||| |
|
|
| T |
17845869 |
tacaa |
17845865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 704 - 799
Target Start/End: Original strand, 24379370 - 24379467
Alignment:
| Q |
704 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
799 |
Q |
| |
|
||||||| |||||||||||||||||||||||| || ||||||||||||||| | | |||||||||| | ||||||||||| ||||| ||||||||| |
|
|
| T |
24379370 |
aattttaacgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggatctttgggcctcttaaaacttccactataatgataataggaatacaa |
24379467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 621 - 671
Target Start/End: Complemental strand, 24380163 - 24380113
Alignment:
| Q |
621 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggca |
671 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||||||||||||||||| |
|
|
| T |
24380163 |
tgttgggaaatgcctgcataatttccctcctctgtgaactcaaaataggca |
24380113 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 704 - 770
Target Start/End: Original strand, 38994151 - 38994218
Alignment:
| Q |
704 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaa |
770 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| || |||||||||||||||||| ||||||||||| |
|
|
| T |
38994151 |
aattttaacgtggaaaaccttctcaatgcgagaaagggaaaaaccacgggaccctcgagcctcttaaa |
38994218 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 3e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 621 - 871
Target Start/End: Complemental strand, 41481815 - 41481548
Alignment:
| Q |
621 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
709 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||| || | |||||| |
|
|
| T |
41481815 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt |
41481719 |
T |
|
| Q |
710 |
agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
805 |
Q |
| |
|
||||||||||||||||||||| |||| |||| |||||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
41481718 |
agcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc |
41481619 |
T |
|
| Q |
806 |
accttcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
871 |
Q |
| |
|
||| | ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
41481618 |
acccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
41481548 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 620 - 871
Target Start/End: Complemental strand, 36167814 - 36167547
Alignment:
| Q |
620 |
atgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgacacacaacaaaattt |
708 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| || | ||||| |
|
|
| T |
36167814 |
atgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcac--tagcggaaacgtgaaatataaacgtaatgacaca-aagagaattt |
36167718 |
T |
|
| Q |
709 |
tagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atctt |
804 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| ||||||||| |||||| | |||||||||| | ||||||||||| ||||||||||||||| | ||| |
|
|
| T |
36167717 |
tagcgtggaaaaccttctcaatatgagaaagggaaaaaaccac-ggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaactt |
36167619 |
T |
|
| Q |
805 |
caccttcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
871 |
Q |
| |
|
|||| | ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
36167618 |
cacccttaggtggatctcactataatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
36167547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 626 - 799
Target Start/End: Original strand, 18951129 - 18951309
Alignment:
| Q |
626 |
ggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat------gacacacaacaaaattttagcgtggaaa |
719 |
Q |
| |
|
||||||||| || |||||| |||||||||||||||||||||||||||| ||||||||| | |||| | | ||| ||||||||| |||||| |
|
|
| T |
18951129 |
ggaaatgcctgcataatttgcctcctccgtgaactcaaaataggcact--agcggaaacatgaaatataagcgtaatgacacagaattttagcatggaaa |
18951226 |
T |
|
| Q |
720 |
accttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
799 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| |||| | || ||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
18951227 |
accttctcaatgtgagaaagggaaaaaaccacgagacctttgggcttcttaaaacttccactataatgataatgggaatacaa |
18951309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 620 - 799
Target Start/End: Complemental strand, 2937 - 2747
Alignment:
| Q |
620 |
atgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattt |
708 |
Q |
| |
|
|||||||||||||| || |||||||||| ||||||||||||||||||| |||| ||||||||||| |||| |||||| || | ||||| |
|
|
| T |
2937 |
atgttgggaaatgcatgcataatttcccttctccgtgaactcaaaatagacact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaattt |
2841 |
T |
|
| Q |
709 |
tagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
799 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
2840 |
tagcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaa |
2747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 1e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 621 - 871
Target Start/End: Original strand, 9757212 - 9757480
Alignment:
| Q |
621 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
709 |
Q |
| |
|
|||||| ||||||| || |||||||| |||||||||||||||||||||||||| ||||||||||| |||| |||||| || | |||||| |
|
|
| T |
9757212 |
tgttggtaaatgcctgcataatttccttcctccgtgaactcaaaataggcact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaatttt |
9757308 |
T |
|
| Q |
710 |
agcgtggaaaaccttctcaatgtgagtaagg-aaaaaccacgggacccgtaagcctcttaaatc---tccactataataataatgggaatacaa-atctt |
804 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||| | |||||||||| ||||||||||| ||||||||||||||| | ||| |
|
|
| T |
9757309 |
agcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaaaacttccactataatgataatgggaatacaacaactt |
9757408 |
T |
|
| Q |
805 |
caccttcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
871 |
Q |
| |
|
|||| | ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
9757409 |
cacccttaggtggatctcactataatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
9757480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 702 - 799
Target Start/End: Original strand, 37286972 - 37287069
Alignment:
| Q |
702 |
aaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
799 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||| |||||||||| ||||| ||||||| ||||||||||||||||| |||||||| |
|
|
| T |
37286972 |
aaaattttagcatggaaaaccttctcaatgtgaaaaaggaaaaatcacgggacccttaagcatcttaaacttccactataataataataagaatacaa |
37287069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 704 - 799
Target Start/End: Original strand, 42682924 - 42683020
Alignment:
| Q |
704 |
aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
799 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||| |||||||||| | ||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
42682924 |
aatttcagcgtggaaaaccttctcaatgtgagaaaggaaaaatcacgggacccttggacctcttaaaacttccactataatgataatgggaatacaa |
42683020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 706 - 799
Target Start/End: Complemental strand, 37038035 - 37037942
Alignment:
| Q |
706 |
ttttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
799 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| |||||||||||||| | |||||||||| | |||||||| |||||| |||||||| |
|
|
| T |
37038035 |
ttttagcgaggaaaaccttctcaatgtgagaaaggagaaaccacgggacccttgggcctcttaaactttcactataacgataatgagaatacaa |
37037942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 639 - 673
Target Start/End: Complemental strand, 37038108 - 37038074
Alignment:
| Q |
639 |
taatttccctcctccgtgaactcaaaataggcact |
673 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37038108 |
taatttctctcctccgtgaactcaaaataggcact |
37038074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 621 - 799
Target Start/End: Original strand, 342217 - 342404
Alignment:
| Q |
621 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgaca---------cacaacaaaattttag |
711 |
Q |
| |
|
|||||| ||||||| || |||||| |||||||||||||||||||||||||||| ||| ||||||| |||| | ||||| | |||||||| |
|
|
| T |
342217 |
tgttggaaaatgcctgcataattttcctcctccgtgaactcaaaataggcact--agcagaaacgtgaaatataagcgtaatgacacaa-agaattttag |
342313 |
T |
|
| Q |
712 |
cgtggaaaaccttctcaatgtgagtaa-ggaa-aaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
799 |
Q |
| |
|
|||| |||||||||||||| |||| || |||| ||||||||||| || | |||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
342314 |
cgtgaaaaaccttctcaatatgagaaatggaagaaaccacgggatccttgggcctcttaaaacttccactataatgataatgggaatacaa |
342404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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