View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1556_low_16 (Length: 210)
Name: NF1556_low_16
Description: NF1556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1556_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 11484292 - 11484109
Alignment:
| Q |
9 |
aggagcagagactcaagaagactttgatatgaatgaattgaaaatgataacagtactgtttttgggtggttggcaatgcatatggttggatgaatgaata |
108 |
Q |
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||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11484292 |
aggagcaaagactcaagaagacttggatatgaatgaattgataatgataacagtactatttttgggtggttggcaatgcatatagttggatgaatgaata |
11484193 |
T |
|
| Q |
109 |
gtagtcataataattgtatctacatctgacaaaataataattatacaaagaaaagttgcacaattttcatctttgaagtttcaa |
192 |
Q |
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| T |
11484192 |
gtagtaataataattgtatctacatctgacaaaataataaatatacaaagaaaagttgcacaattttcatctttgaagtttcaa |
11484109 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 26798377 - 26798336
Alignment:
| Q |
128 |
ctacatctgacaaaataataattatacaaagaaaagttgcac |
169 |
Q |
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| T |
26798377 |
ctacatctgacaaaataataaatatacaaagaaatgttgcac |
26798336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 26801285 - 26801252
Alignment:
| Q |
128 |
ctacatctgacaaaataataattatacaaagaaa |
161 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
26801285 |
ctacatctgacaaaataataaatatacaaagaaa |
26801252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 26808835 - 26808802
Alignment:
| Q |
128 |
ctacatctgacaaaataataattatacaaagaaa |
161 |
Q |
| |
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||||||||||||||||||||| |||||||||||| |
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|
| T |
26808835 |
ctacatctgacaaaataataaatatacaaagaaa |
26808802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 26816225 - 26816192
Alignment:
| Q |
128 |
ctacatctgacaaaataataattatacaaagaaa |
161 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
26816225 |
ctacatctgacaaaataataaatatacaaagaaa |
26816192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 26823862 - 26823829
Alignment:
| Q |
128 |
ctacatctgacaaaataataattatacaaagaaa |
161 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
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|
| T |
26823862 |
ctacatctgacaaaataataaatatacaaagaaa |
26823829 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 10218906 - 10218865
Alignment:
| Q |
128 |
ctacatctgacaaaataataattatacaaagaaaagttgcac |
169 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||| |
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|
| T |
10218906 |
ctacatctgacaaaataataaatatacaaagaaatgttgcac |
10218865 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 10255815 - 10255774
Alignment:
| Q |
128 |
ctacatctgacaaaataataattatacaaagaaaagttgcac |
169 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
10255815 |
ctacatctgacaaaataataaatatacaaagaaatgttgcac |
10255774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 10227908 - 10227875
Alignment:
| Q |
128 |
ctacatctgacaaaataataattatacaaagaaa |
161 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
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|
| T |
10227908 |
ctacatctgacaaaataataaatatacaaagaaa |
10227875 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 10499780 - 10499740
Alignment:
| Q |
130 |
acatctgacaaaataataattatacaaagaaaagttgcaca |
170 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||| |||| |
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|
| T |
10499780 |
acatctgactaaataataaatatacaaagaaaagtttcaca |
10499740 |
T |
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