View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1556_low_6 (Length: 267)

Name: NF1556_low_6
Description: NF1556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1556_low_6
NF1556_low_6
[»] chr3 (24 HSPs)
chr3 (3-115)||(34832205-34832320)
chr3 (127-228)||(1941751-1941852)
chr3 (127-228)||(12264297-12264398)
chr3 (127-228)||(38653958-38654059)
chr3 (127-228)||(43363642-43363743)
chr3 (127-228)||(49506380-49506481)
chr3 (127-228)||(49672659-49672760)
chr3 (127-228)||(20671346-20671447)
chr3 (127-228)||(21098401-21098502)
chr3 (127-228)||(26948895-26948996)
chr3 (127-228)||(34121452-34121553)
chr3 (135-228)||(54073124-54073217)
chr3 (127-228)||(3898519-3898620)
chr3 (127-228)||(4584465-4584566)
chr3 (127-228)||(40014684-40014785)
chr3 (127-228)||(45557915-45558016)
chr3 (127-227)||(36076485-36076585)
chr3 (129-228)||(31488508-31488607)
chr3 (127-228)||(39146537-39146638)
chr3 (127-228)||(55041614-55041715)
chr3 (128-228)||(26051334-26051435)
chr3 (138-228)||(24119304-24119394)
chr3 (135-228)||(49478305-49478398)
chr3 (127-202)||(6460199-6460273)
[»] chr4 (25 HSPs)
chr4 (2-115)||(46166770-46166886)
chr4 (127-228)||(16917919-16918020)
chr4 (127-228)||(52434721-52434822)
chr4 (127-228)||(12090490-12090591)
chr4 (127-228)||(16904983-16905084)
chr4 (127-228)||(30824953-30825054)
chr4 (127-228)||(53143293-53143394)
chr4 (127-228)||(37651763-37651864)
chr4 (127-228)||(33139502-33139603)
chr4 (127-228)||(35760678-35760779)
chr4 (127-228)||(46256131-46256232)
chr4 (129-228)||(54625047-54625146)
chr4 (127-228)||(41387223-41387324)
chr4 (127-228)||(44376110-44376211)
chr4 (127-228)||(47142831-47142932)
chr4 (127-223)||(52098221-52098317)
chr4 (127-228)||(48118565-48118663)
chr4 (127-228)||(31628518-31628619)
chr4 (127-228)||(31966000-31966101)
chr4 (127-228)||(37590835-37590936)
chr4 (127-228)||(39058388-39058489)
chr4 (127-228)||(45977021-45977122)
chr4 (158-228)||(50229768-50229838)
chr4 (145-228)||(45782478-45782561)
chr4 (136-190)||(50229712-50229766)
[»] scaffold0031 (1 HSPs)
scaffold0031 (127-228)||(46371-46472)
[»] chr8 (27 HSPs)
chr8 (127-228)||(6299051-6299152)
chr8 (127-228)||(15961229-15961330)
chr8 (127-228)||(18175478-18175579)
chr8 (127-228)||(18997797-18997898)
chr8 (127-228)||(30473915-30474016)
chr8 (127-228)||(44832217-44832318)
chr8 (127-228)||(995846-995947)
chr8 (127-228)||(10478034-10478135)
chr8 (127-228)||(32110892-32110993)
chr8 (127-228)||(11142564-11142665)
chr8 (127-228)||(11725287-11725388)
chr8 (135-228)||(19412929-19413022)
chr8 (127-228)||(39257540-39257641)
chr8 (127-226)||(35122353-35122452)
chr8 (127-228)||(28274245-28274346)
chr8 (127-228)||(39997788-39997889)
chr8 (127-228)||(40026897-40026998)
chr8 (128-228)||(18210656-18210756)
chr8 (127-226)||(18842003-18842102)
chr8 (145-228)||(19240760-19240843)
chr8 (145-228)||(19313944-19314027)
chr8 (127-228)||(18568962-18569063)
chr8 (127-228)||(28582952-28583053)
chr8 (127-227)||(24408974-24409074)
chr8 (129-228)||(44837006-44837105)
chr8 (148-228)||(24004779-24004859)
chr8 (128-228)||(25875322-25875417)
[»] chr7 (20 HSPs)
chr7 (127-228)||(3840672-3840773)
chr7 (127-228)||(21804603-21804704)
chr7 (127-228)||(33916978-33917079)
chr7 (127-228)||(38163370-38163471)
chr7 (127-228)||(42242185-42242286)
chr7 (127-228)||(17178268-17178369)
chr7 (127-228)||(27138559-27138660)
chr7 (128-228)||(15109697-15109797)
chr7 (127-228)||(21670078-21670179)
chr7 (127-228)||(27903448-27903549)
chr7 (127-228)||(31373553-31373654)
chr7 (127-228)||(13786267-13786368)
chr7 (127-228)||(16376576-16376677)
chr7 (127-228)||(24924176-24924277)
chr7 (127-228)||(39030283-39030384)
chr7 (127-228)||(21341920-21342021)
chr7 (127-228)||(21656725-21656826)
chr7 (127-228)||(40968988-40969089)
chr7 (127-228)||(43933575-43933676)
chr7 (128-228)||(21753524-21753624)
[»] chr6 (16 HSPs)
chr6 (127-228)||(2266873-2266974)
chr6 (127-228)||(12597296-12597397)
chr6 (3-115)||(18101836-18101951)
chr6 (127-228)||(19997762-19997863)
chr6 (127-228)||(33646039-33646140)
chr6 (127-228)||(10584759-10584860)
chr6 (127-228)||(28099628-28099729)
chr6 (127-228)||(13533864-13533965)
chr6 (127-228)||(17202529-17202630)
chr6 (127-228)||(3592990-3593091)
chr6 (127-228)||(15044819-15044920)
chr6 (127-228)||(2005525-2005626)
chr6 (127-221)||(1405594-1405688)
chr6 (135-226)||(33035532-33035623)
chr6 (163-223)||(17594919-17594979)
chr6 (199-228)||(8539697-8539726)
[»] chr5 (23 HSPs)
chr5 (127-228)||(2398973-2399074)
chr5 (127-228)||(16526337-16526438)
chr5 (127-228)||(20874785-20874886)
chr5 (127-228)||(34107369-34107470)
chr5 (127-228)||(34110749-34110850)
chr5 (127-228)||(38246896-38246997)
chr5 (127-228)||(10729473-10729574)
chr5 (135-228)||(17373203-17373296)
chr5 (127-228)||(40177138-40177239)
chr5 (135-228)||(33570346-33570439)
chr5 (138-228)||(6940545-6940635)
chr5 (143-228)||(14141154-14141239)
chr5 (127-228)||(20655080-20655181)
chr5 (127-228)||(24223195-24223296)
chr5 (135-228)||(27648027-27648120)
chr5 (127-228)||(1396086-1396187)
chr5 (127-228)||(5479293-5479394)
chr5 (151-228)||(1394541-1394618)
chr5 (127-228)||(25099267-25099368)
chr5 (127-228)||(25158357-25158458)
chr5 (135-228)||(29275721-29275814)
chr5 (127-228)||(33375859-33375962)
chr5 (159-228)||(17913838-17913907)
[»] chr2 (18 HSPs)
chr2 (127-228)||(6120649-6120750)
chr2 (127-228)||(18351648-18351749)
chr2 (127-228)||(27944827-27944928)
chr2 (127-228)||(41663334-41663435)
chr2 (127-228)||(41664607-41664708)
chr2 (127-228)||(44902178-44902279)
chr2 (127-226)||(42442063-42442162)
chr2 (127-228)||(8700358-8700459)
chr2 (127-228)||(19596394-19596495)
chr2 (127-228)||(20544922-20545023)
chr2 (127-228)||(31424106-31424207)
chr2 (127-228)||(692233-692334)
chr2 (127-228)||(42055294-42055395)
chr2 (127-226)||(36279485-36279584)
chr2 (135-228)||(34007748-34007841)
chr2 (129-228)||(26231292-26231391)
chr2 (127-228)||(999262-999363)
chr2 (137-228)||(16214921-16215012)
[»] chr1 (21 HSPs)
chr1 (127-228)||(4266478-4266579)
chr1 (127-228)||(31018231-31018332)
chr1 (127-228)||(34888717-34888818)
chr1 (127-228)||(38913778-38913879)
chr1 (127-228)||(50151157-50151258)
chr1 (127-228)||(50326098-50326199)
chr1 (127-228)||(1231893-1231994)
chr1 (127-227)||(35614165-35614265)
chr1 (127-227)||(38444729-38444829)
chr1 (127-228)||(9216128-9216229)
chr1 (127-228)||(23482738-23482839)
chr1 (127-228)||(2951397-2951498)
chr1 (127-228)||(18706540-18706640)
chr1 (136-228)||(39728077-39728169)
chr1 (129-228)||(7334041-7334140)
chr1 (135-228)||(35614912-35615005)
chr1 (127-228)||(52687145-52687246)
chr1 (129-213)||(5061335-5061419)
chr1 (139-228)||(19764593-19764682)
chr1 (127-228)||(18855264-18855364)
chr1 (127-190)||(29942153-29942216)
[»] scaffold0022 (1 HSPs)
scaffold0022 (127-227)||(149081-149181)
[»] scaffold0836 (1 HSPs)
scaffold0836 (128-228)||(5310-5410)
[»] scaffold0515 (1 HSPs)
scaffold0515 (127-228)||(6092-6193)
[»] scaffold0306 (1 HSPs)
scaffold0306 (127-228)||(6102-6203)
[»] scaffold0173 (1 HSPs)
scaffold0173 (130-228)||(19444-19542)


Alignment Details
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 34832205 - 34832320
Alignment:
Q  3 gcttcctcttctatatttttc---gttttccatacgttttcctcttcaattttttaaatctgcaattagacttgagagttatgcacaccatgattcaact 99  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34832205 gcttcctcttctatatttttcctggttttccatacgttttcctcttcaattttttaaatctgcaattagacttgagagttatgcacaccatgattcaact 34832304  T
Q  100 tcctatgtattattaa 115  Q
    ||||||||||||||||    
T  34832305 tcctatgtattattaa 34832320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 1941751 - 1941852
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1941751 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 1941850  T
Q  227 cc 228  Q
    ||    
T  1941851 cc 1941852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 12264398 - 12264297
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12264398 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 12264299  T
Q  227 cc 228  Q
    ||    
T  12264298 cc 12264297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 38653958 - 38654059
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38653958 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 38654057  T
Q  227 cc 228  Q
    ||    
T  38654058 cc 38654059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 43363642 - 43363743
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43363642 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 43363741  T
Q  227 cc 228  Q
    ||    
T  43363742 cc 43363743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 49506380 - 49506481
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49506380 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 49506479  T
Q  227 cc 228  Q
    ||    
T  49506480 cc 49506481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 49672760 - 49672659
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49672760 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 49672661  T
Q  227 cc 228  Q
    ||    
T  49672660 cc 49672659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 20671447 - 20671346
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20671447 tcatatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 20671348  T
Q  227 cc 228  Q
    ||    
T  20671347 cc 20671346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 21098502 - 21098401
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21098502 tcatatacattgtagatataatagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 21098403  T
Q  227 cc 228  Q
    ||    
T  21098402 cc 21098401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 26948996 - 26948895
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26948996 tcatatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 26948897  T
Q  227 cc 228  Q
    ||    
T  26948896 cc 26948895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 34121553 - 34121452
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34121553 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatacgtggtcccaaatatatgcagatgttggaattcgaa 34121454  T
Q  227 cc 228  Q
    ||    
T  34121453 cc 34121452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 54073217 - 54073124
Alignment:
Q  135 attgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54073217 attgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 54073124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 3898620 - 3898519
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3898620 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatattaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaatttgaa 3898521  T
Q  227 cc 228  Q
    ||    
T  3898520 cc 3898519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 4584465 - 4584566
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4584465 tcatatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaatttgaa 4584564  T
Q  227 cc 228  Q
    ||    
T  4584565 cc 4584566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 40014684 - 40014785
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40014684 tcatatacattgtagatataataaacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 40014783  T
Q  227 cc 228  Q
    ||    
T  40014784 cc 40014785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 45557915 - 45558016
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  45557915 tcatatatattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaagtatatgcagatgttgaaattcgaa 45558014  T
Q  227 cc 228  Q
    ||    
T  45558015 cc 45558016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 127 - 227
Target Start/End: Original strand, 36076485 - 36076585
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36076485 tcatatacattgtagatgtagtagacaaaaacaaatctcaatgcatattaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 36076584  T
Q  227 c 227  Q
    |    
T  36076585 c 36076585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 31488607 - 31488508
Alignment:
Q  129 atatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31488607 atatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgttgtcccaaatatatgcagatgttggaattcgaacc 31488508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 39146638 - 39146537
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39146638 tcatatacattgtagatgtagtagacaaaaataaatctcaatgcatatcaaagagaataaaatatgtggtcccaaatatatgcagatgttggaattcgaa 39146539  T
Q  227 cc 228  Q
    ||    
T  39146538 cc 39146537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 55041614 - 55041715
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  55041614 tcatatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggttccaaatatatgcagatgtttgaattcgaa 55041713  T
Q  227 cc 228  Q
    ||    
T  55041714 cc 55041715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 26051334 - 26051435
Alignment:
Q  128 catatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggt-cccaaatatatgcagatgttggaattcgaa 226  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  26051334 catatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtccccaaatatatgctgaggttggaattcgaa 26051433  T
Q  227 cc 228  Q
    ||    
T  26051434 cc 26051435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 138 - 228
Target Start/End: Complemental strand, 24119394 - 24119304
Alignment:
Q  138 gtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    |||||| |||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||| ||||    
T  24119394 gtagatgtagtagacaaaaacaaatctcaatgcatattaaagataatgaaatatatggtcccaaatatatgcagatgttggaattcaaacc 24119304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 49478398 - 49478305
Alignment:
Q  135 attgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    ||||||||  ||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  49478398 attgtagacgtagtagataaaaacaaatctcaatacatatcaaagataatgaaatatgtggtcccaaatatatgcaaatgttggaattcgaacc 49478305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 6460199 - 6460273
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaa 202  Q
    ||||||| ||||||||| |||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||    
T  6460199 tcatatacattgtagatgtagtagacaaaaacaaatctcaatacatatcaaa-agaataaaatatgtggtcccaaa 6460273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 46166886 - 46166770
Alignment:
Q  2 tgcttcctcttctatatttttc---gttttccatacgttttcctcttcaattttttaaatctgcaattagacttgagagttatgcacaccatgattcaac 98  Q
    ||||||||||||||||||||||   |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46166886 tgcttcctcttctatatttttcctggttttccatacgtttttctcttcaattttttaaatctgcaattagacttgagagttatgcacaccatgattcaac 46166787  T
Q  99 ttcctatgtattattaa 115  Q
    |||||||||||||||||    
T  46166786 ttcctatgtattattaa 46166770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 16917919 - 16918020
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16917919 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 16918018  T
Q  227 cc 228  Q
    ||    
T  16918019 cc 16918020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 52434822 - 52434721
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52434822 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 52434723  T
Q  227 cc 228  Q
    ||    
T  52434722 cc 52434721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 12090490 - 12090591
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12090490 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgtagatgttggaattcgaa 12090589  T
Q  227 cc 228  Q
    ||    
T  12090590 cc 12090591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 16904983 - 16905084
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16904983 tcatatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 16905082  T
Q  227 cc 228  Q
    ||    
T  16905083 cc 16905084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 30824953 - 30825054
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30824953 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggttccaaatatatgcagatgttggaattcgaa 30825052  T
Q  227 cc 228  Q
    ||    
T  30825053 cc 30825054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 53143293 - 53143394
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53143293 tcatatacattgtagatataatagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 53143392  T
Q  227 cc 228  Q
    ||    
T  53143393 cc 53143394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 37651864 - 37651763
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37651864 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatgaaagagaatgaaatatgtggtctcaaatatatgcagatgttggaattcgaa 37651765  T
Q  227 cc 228  Q
    ||    
T  37651764 cc 37651763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 33139502 - 33139603
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  33139502 tcatatacattgtagatttagtagacaaaaacaaatctcaatgcatatcaaagagaattaaatatgttgtcccaaatatatgcagatgttggaattcgaa 33139601  T
Q  227 cc 228  Q
    ||    
T  33139602 cc 33139603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 35760779 - 35760678
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35760779 tcatatacattgtagatatagtagataaaaataaatctcaatgtatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 35760680  T
Q  227 cc 228  Q
    ||    
T  35760679 cc 35760678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 46256232 - 46256131
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  46256232 tcatatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaataaaatatgtggtcccaaatatatgcagatgttggaattggaa 46256133  T
Q  227 cc 228  Q
    ||    
T  46256132 cc 46256131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 54625146 - 54625047
Alignment:
Q  129 atatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    ||||| ||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54625146 atatacattgtagacgtagtagacaaaaacaaatcttaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 54625047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 41387324 - 41387223
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| || ||||||||    
T  41387324 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaataaaacatgtggtcccaaatatatgcagatgctgaaattcgaa 41387225  T
Q  227 cc 228  Q
    ||    
T  41387224 cc 41387223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 44376110 - 44376211
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||    
T  44376110 tcatatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaataaaacatgtggtcacaaatatatgcagatgttggaattcgaa 44376209  T
Q  227 cc 228  Q
    ||    
T  44376210 cc 44376211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 47142831 - 47142932
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||    
T  47142831 tcatatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaatgacatatgtggtctcaaatatatgcagatgttagaattcgaa 47142930  T
Q  227 cc 228  Q
    ||    
T  47142931 cc 47142932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 127 - 223
Target Start/End: Original strand, 52098221 - 52098317
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattc 223  Q
    ||||||| | |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52098221 tcatatacactgtaaatatagtagacaaaaataaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattc 52098317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 48118565 - 48118663
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| |||||||||   ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48118565 tcatatacattgtagat---gtagacaaaaataaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 48118661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 31628518 - 31628619
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| | ||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  31628518 tcatatacattgtagatgttgtagacaaaaacatatctcaatgcatatcaaagagaattaaatatgtggtctcaaatatatgcagatgttggaattcgaa 31628617  T
Q  227 cc 228  Q
    ||    
T  31628618 cc 31628619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 31966000 - 31966101
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| || || ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31966000 tcatatacattgtagatttattatacataaataaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 31966099  T
Q  227 cc 228  Q
    ||    
T  31966100 cc 31966101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 37590835 - 37590936
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||    
T  37590835 tcatatacattgtagatgtagtagacaaaatcaaatctcaatgcatatcaaagagaataaaacatgtggtcccaaatatatgcagatgttgaaattcgaa 37590934  T
Q  227 cc 228  Q
    ||    
T  37590935 cc 37590936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 39058388 - 39058489
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| |||||||||||||||||||||||||||| | |||  |||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  39058388 tcatatacattgtagatatagtagacaaaaacaaattttaatatatatcaaagagaatgaaatatgtggtcccaaatatatcaagatgttggaattcgaa 39058487  T
Q  227 cc 228  Q
    ||    
T  39058488 cc 39058489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 45977021 - 45977122
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| || |||||| ||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45977021 tcatatacatcgtagatgtagtagataaaaataaatatcaatgcatatcaaagagaatgaaatatgtggtcctaaatatatgcagatgttggaattcgaa 45977120  T
Q  227 cc 228  Q
    ||    
T  45977121 cc 45977122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 50229768 - 50229838
Alignment:
Q  158 caaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  50229768 caaatctcaatgcatatcaaagagaatgaaacatgtggtccaaaatatatgcagatgttggaattcgaacc 50229838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 45782478 - 45782561
Alignment:
Q  145 tagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||    
T  45782478 tagtagacaaaaataaatctcaatatatatcaaagagaatgaaatatgtggtcctaaatatatgaagatgttggaatttgaacc 45782561  T

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Target: chr4; HSP #25
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 50229712 - 50229766
Alignment:
Q  136 ttgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaata 190  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  50229712 ttgtagatgtagtagacaaaaaaaaatctcaatgcatatcaaagagaatgaaata 50229766  T

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Target: scaffold0031 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 46472 - 46371
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46472 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 46373  T
Q  227 cc 228  Q
    ||    
T  46372 cc 46371  T

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Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 6299051 - 6299152
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6299051 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 6299150  T
Q  227 cc 228  Q
    ||    
T  6299151 cc 6299152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 15961330 - 15961229
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15961330 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 15961231  T
Q  227 cc 228  Q
    ||    
T  15961230 cc 15961229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 18175579 - 18175478
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18175579 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 18175480  T
Q  227 cc 228  Q
    ||    
T  18175479 cc 18175478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 18997898 - 18997797
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18997898 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 18997799  T
Q  227 cc 228  Q
    ||    
T  18997798 cc 18997797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 30473915 - 30474016
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30473915 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 30474014  T
Q  227 cc 228  Q
    ||    
T  30474015 cc 30474016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 44832217 - 44832318
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44832217 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 44832316  T
Q  227 cc 228  Q
    ||    
T  44832317 cc 44832318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 995846 - 995947
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  995846 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcatatgttggaattcgaa 995945  T
Q  227 cc 228  Q
    ||    
T  995946 cc 995947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 10478135 - 10478034
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10478135 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcacaaatatatgcagatgttggaattcgaa 10478036  T
Q  227 cc 228  Q
    ||    
T  10478035 cc 10478034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 32110892 - 32110993
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32110892 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggttccaaatatatgcagatgttggaattcgaa 32110991  T
Q  227 cc 228  Q
    ||    
T  32110992 cc 32110993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 11142665 - 11142564
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11142665 tcatatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtgctcccaaatatatgcagatgttggaattcgaa 11142566  T
Q  227 cc 228  Q
    ||    
T  11142565 cc 11142564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 11725388 - 11725287
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11725388 tcatatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtctcaaatatatgcagatgttggaattcgaa 11725289  T
Q  227 cc 228  Q
    ||    
T  11725288 cc 11725287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 19413022 - 19412929
Alignment:
Q  135 attgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19413022 attgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 19412929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 39257641 - 39257540
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  39257641 tcatatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaatttgaa 39257542  T
Q  227 cc 228  Q
    ||    
T  39257541 cc 39257540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 35122353 - 35122452
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35122353 tcatatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtccaaaatatatgcagatgttggaattcgaa 35122452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 28274245 - 28274346
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28274245 tcatatacattgtagatgtagcagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatacgcagatgttggaattcgaa 28274344  T
Q  227 cc 228  Q
    ||    
T  28274345 cc 28274346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 39997889 - 39997788
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39997889 tcatatacattgtagatgtagtagacaaaaacaaatctcaatgtatatcaaagagaatgaaatatgtggttccaaatatatgcagatgttggaattcgaa 39997790  T
Q  227 cc 228  Q
    ||    
T  39997789 cc 39997788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 40026998 - 40026897
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  40026998 tcatatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagataatgaaatatgtggtcccaaatatatgcagatgttggaatttgaa 40026899  T
Q  227 cc 228  Q
    ||    
T  40026898 cc 40026897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 18210656 - 18210756
Alignment:
Q  128 catatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaac 227  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  18210656 catatacattgtagatatagtagacaaaaataaatctcaatgcatatcaaagagaatgaaatatgtggtctcaaatatatgcagatgttggaatttgaac 18210755  T
Q  228 c 228  Q
    |    
T  18210756 c 18210756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 18842102 - 18842003
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18842102 tcatatacattgtagatgtagtagacaaaaataaatctcaatgcatatcaaagagaatgaaatatgtggtccaaaatatatgcagatgttggaattcgaa 18842003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 19240843 - 19240760
Alignment:
Q  145 tagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19240843 tagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 19240760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 19314027 - 19313944
Alignment:
Q  145 tagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19314027 tagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 19313944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 18569063 - 18568962
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| | ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18569063 tcatatacattgtagatgttgtagacaaaaacatatctcaatgcatatcaaagagaataaaatatgtggtcccaaatatatgcagatgttggaattcgaa 18568964  T
Q  227 cc 228  Q
    ||    
T  18568963 cc 18568962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 28583053 - 28582952
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28583053 tcatatacattgtagatgtagtagataaaaacaaatctcaatgtatatcaaagagaatgaaatatgtggtctcaaatatatgcagatgttggaattcgaa 28582954  T
Q  227 cc 228  Q
    ||    
T  28582953 cc 28582952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 24409074 - 24408974
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| ||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24409074 tcatatacattgtagatgtagtagataaaaacaaatcttaatgcatatcaaagataatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 24408975  T
Q  227 c 227  Q
    |    
T  24408974 c 24408974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 44837105 - 44837006
Alignment:
Q  129 atatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    ||||| ||||||||| ||||||||||||| |||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  44837105 atatacattgtagatgtagtagacaaaaataaatctcaatacatatcaaagagaataaaatatgtggtcctaaatatatgcagatgttggaattcgaacc 44837006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 148 - 228
Target Start/End: Original strand, 24004779 - 24004859
Alignment:
Q  148 tagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    ||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||    
T  24004779 tagacaaaatcaaatctcaatgcatatcaaagagaataaaacatgtggtcccaaatatatgcagatgttgaaattcgaacc 24004859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 25875322 - 25875417
Alignment:
Q  128 catatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaac 227  Q
    |||||| || ||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| ||||     |||||||||| ||||||||||||    
T  25875322 catatacatcgtagatatagtagacaaaaacaaatctcaatgcatattaaagagaataaaacatgtgctccc-----tatgcagatgctggaattcgaac 25875416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 3840672 - 3840773
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3840672 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 3840771  T
Q  227 cc 228  Q
    ||    
T  3840772 cc 3840773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 21804603 - 21804704
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21804603 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 21804702  T
Q  227 cc 228  Q
    ||    
T  21804703 cc 21804704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 33916978 - 33917079
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33916978 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 33917077  T
Q  227 cc 228  Q
    ||    
T  33917078 cc 33917079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 38163370 - 38163471
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38163370 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 38163469  T
Q  227 cc 228  Q
    ||    
T  38163470 cc 38163471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 42242185 - 42242286
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42242185 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 42242284  T
Q  227 cc 228  Q
    ||    
T  42242285 cc 42242286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 17178268 - 17178369
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17178268 tcatatacattgtagatatagtagacaaaaacaaatctcaattcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 17178367  T
Q  227 cc 228  Q
    ||    
T  17178368 cc 17178369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 27138559 - 27138660
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27138559 tcatatacattctagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 27138658  T
Q  227 cc 228  Q
    ||    
T  27138659 cc 27138660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 15109697 - 15109797
Alignment:
Q  128 catatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaac 227  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15109697 catatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaac 15109796  T
Q  228 c 228  Q
    |    
T  15109797 c 15109797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 21670179 - 21670078
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21670179 tcatatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaataaaatatgtggtcccaaatatatgcagatgttggaattcgaa 21670080  T
Q  227 cc 228  Q
    ||    
T  21670079 cc 21670078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 27903448 - 27903549
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  27903448 tcatatatattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaataaaacatgtggtcccaaatatatgcagatgttggaattcgaa 27903547  T
Q  227 cc 228  Q
    ||    
T  27903548 cc 27903549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 31373654 - 31373553
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31373654 tcatatacattgtagatataatagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttgaaattcgaa 31373555  T
Q  227 cc 228  Q
    ||    
T  31373554 cc 31373553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 13786368 - 13786267
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  13786368 tcatatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaataaaacatgtggtcccaaatatatgcagatgttggaattcgaa 13786269  T
Q  227 cc 228  Q
    ||    
T  13786268 cc 13786267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 16376576 - 16376677
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  16376576 tcatatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaataaaacatgtggtcccaaatatatgcagatgttggaattcgaa 16376675  T
Q  227 cc 228  Q
    ||    
T  16376676 cc 16376677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 24924277 - 24924176
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  24924277 tcatatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgtagatgttggaatttgaa 24924178  T
Q  227 cc 228  Q
    ||    
T  24924177 cc 24924176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 39030283 - 39030384
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  39030283 tcatatatattgtagatgtagtagacaaaaacaaatttcaatgcatatcaaagagaataaaacatgtggtcccaaatatatgcagatgttggaattcgaa 39030382  T
Q  227 cc 228  Q
    ||    
T  39030383 cc 39030384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 21342021 - 21341920
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  21342021 tcatatacattgtagatataatagacaaaaataaatctcaatgcatatcaaagagaatgaaatatgtagtctcaaatatatgcagatgttggaattcgaa 21341922  T
Q  227 cc 228  Q
    ||    
T  21341921 cc 21341920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 21656826 - 21656725
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| | |||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21656826 tcatatacactgtagatgaagtagacaaaaacaaatctcaatgcatatcaaagagaataaaatatgtggtcccaaatatatgcagatgttggaattcgaa 21656727  T
Q  227 cc 228  Q
    ||    
T  21656726 cc 21656725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 40969089 - 40968988
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  40969089 tcatatacattgtagatgtagtagacacaaacaaatctcaatgcatatcaaagagaataaaacatgtggtcccaaatatatgcagatgttggaattcgaa 40968990  T
Q  227 cc 228  Q
    ||    
T  40968989 cc 40968988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 43933575 - 43933676
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| ||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  43933575 tcatatacattgtagatgtagtagacaaaaaaaaatctcaatgcatataaaagagaataaaatatgtggtcccaaatatatgcagatgttggaattcgaa 43933674  T
Q  227 cc 228  Q
    ||    
T  43933675 cc 43933676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 21753524 - 21753624
Alignment:
Q  128 catatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaac 227  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||  |||||||||    
T  21753524 catatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaataaaacatgtggtctcaaatatatgcagatgttaaaattcgaac 21753623  T
Q  228 c 228  Q
    |    
T  21753624 c 21753624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 2266974 - 2266873
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2266974 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 2266875  T
Q  227 cc 228  Q
    ||    
T  2266874 cc 2266873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 12597296 - 12597397
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12597296 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 12597395  T
Q  227 cc 228  Q
    ||    
T  12597396 cc 12597397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 18101836 - 18101951
Alignment:
Q  3 gcttcctcttctatatttttc---gttttccatacgttttcctcttcaattttttaaatctgcaattagacttgagagttatgcacaccatgattcaact 99  Q
    |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18101836 gcttcctcttctatatttttcctggttttccatacgttttcctcttcaattttttaaatctgcaattagacttgagggttatgcacaccatgattcaact 18101935  T
Q  100 tcctatgtattattaa 115  Q
    ||||||||||||||||    
T  18101936 tcctatgtattattaa 18101951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 19997863 - 19997762
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19997863 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 19997764  T
Q  227 cc 228  Q
    ||    
T  19997763 cc 19997762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 33646140 - 33646039
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33646140 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggttccaaatatatgcagatgttggaattcgaa 33646041  T
Q  227 cc 228  Q
    ||    
T  33646040 cc 33646039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 10584759 - 10584860
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10584759 tcatatacattgtagatgtagtagacaaaaacaaatcttaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 10584858  T
Q  227 cc 228  Q
    ||    
T  10584859 cc 10584860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 28099628 - 28099729
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28099628 tcatatacattgtagatataatagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgctgatgttggaattcgaa 28099727  T
Q  227 cc 228  Q
    ||    
T  28099728 cc 28099729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 13533965 - 13533864
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13533965 tcatatacattgtagatgtagtagataaaaacaaatctcaatgtatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 13533866  T
Q  227 cc 228  Q
    ||    
T  13533865 cc 13533864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 17202630 - 17202529
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17202630 tcatatacattgtagatgtagtagacaaatacaaatcacaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 17202531  T
Q  227 cc 228  Q
    ||    
T  17202530 cc 17202529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 3593091 - 3592990
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  3593091 tcatatacattgtagatgtagtagacaaaaacaaatctcaatgcatatccaagagaatgaaatatgtgatcccaaatatattcagatgttggaattcgaa 3592992  T
Q  227 cc 228  Q
    ||    
T  3592991 cc 3592990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 15044920 - 15044819
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| ||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15044920 tcatatacattgtagatgtagtagacaaaaataaatttcaatgcatatcaaagagaataaaatatgtggtcccaaatatatgcagatgttggaattcgaa 15044821  T
Q  227 cc 228  Q
    ||    
T  15044820 cc 15044819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 2005626 - 2005525
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||| ||| ||||||||  |||||||||||||||||||||||||||    
T  2005626 tcatatacattgtagatgcagtagacaaaaacaaatctcaatgcatatcaaagagaataaaacatgtggtcttaaatatatgcagatgttggaattcgaa 2005527  T
Q  227 cc 228  Q
    ||    
T  2005526 cc 2005525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 1405594 - 1405688
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaat 221  Q
    ||||||| ||||||||| ||||||| ||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  1405594 tcatatacattgtagatgtagtagataaaaacaaatctcaatgtatattaaagagaatgaaatatgtgatcccaaatatatgcagatgttggaat 1405688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 33035623 - 33035532
Alignment:
Q  135 attgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||| ||| |||||||| |||||||||||||||| |||||||||||    
T  33035623 attgtagatgtagtagacaaaaacaaatctcaatgcatgtcaaagagaataaaacatgtggtctcaaatatatgcagatgctggaattcgaa 33035532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 17594979 - 17594919
Alignment:
Q  163 ctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattc 223  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||    
T  17594979 ctcaatgcatatcaaagaaaatgaaatatgtggtcccaaatatatggagatgttgaaattc 17594919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 228
Target Start/End: Complemental strand, 8539726 - 8539697
Alignment:
Q  199 caaatatatgcagatgttggaattcgaacc 228  Q
    ||||||||||||||||||||||||||||||    
T  8539726 caaatatatgcagatgttggaattcgaacc 8539697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 2398973 - 2399074
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2398973 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 2399072  T
Q  227 cc 228  Q
    ||    
T  2399073 cc 2399074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 16526337 - 16526438
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16526337 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 16526436  T
Q  227 cc 228  Q
    ||    
T  16526437 cc 16526438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 20874886 - 20874785
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20874886 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 20874787  T
Q  227 cc 228  Q
    ||    
T  20874786 cc 20874785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 34107369 - 34107470
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34107369 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 34107468  T
Q  227 cc 228  Q
    ||    
T  34107469 cc 34107470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 34110850 - 34110749
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34110850 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 34110751  T
Q  227 cc 228  Q
    ||    
T  34110750 cc 34110749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 38246896 - 38246997
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38246896 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 38246995  T
Q  227 cc 228  Q
    ||    
T  38246996 cc 38246997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 10729473 - 10729574
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10729473 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatccaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 10729572  T
Q  227 cc 228  Q
    ||    
T  10729573 cc 10729574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 17373203 - 17373296
Alignment:
Q  135 attgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17373203 attgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 17373296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 40177239 - 40177138
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40177239 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatataaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 40177140  T
Q  227 cc 228  Q
    ||    
T  40177139 cc 40177138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 33570346 - 33570439
Alignment:
Q  135 attgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33570346 attgtagatatagtagacaaaaacaaatctcaatgcataccaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 33570439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 6940545 - 6940635
Alignment:
Q  138 gtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6940545 gtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 6940635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 14141154 - 14141239
Alignment:
Q  143 tatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14141154 tatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 14141239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 20655080 - 20655181
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  20655080 tcatatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaataaaacatgtggtcccaaatatatgcagatgttggaattcgaa 20655179  T
Q  227 cc 228  Q
    ||    
T  20655180 cc 20655181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 24223195 - 24223296
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| || |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24223195 tcatatacatcgtagatgtagtagacaaaaacaaatctcaatgcatatgaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 24223294  T
Q  227 cc 228  Q
    ||    
T  24223295 cc 24223296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 27648120 - 27648027
Alignment:
Q  135 attgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27648120 attgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatacagatgttggaattcgaacc 27648027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 1396187 - 1396086
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1396187 tcatatacattgcagatgtagcagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatctgcagatgttggaattcgaa 1396088  T
Q  227 cc 228  Q
    ||    
T  1396087 cc 1396086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 5479394 - 5479293
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  5479394 tcatatacattgtagatgtagtagacaaaaataaatctcaatgcatatcaaagagaatgaaatatgtgatcccaaatatatgtagatgttggaattcgaa 5479295  T
Q  227 cc 228  Q
    ||    
T  5479294 cc 5479293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 1394541 - 1394618
Alignment:
Q  151 acaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1394541 acaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 1394618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 25099267 - 25099368
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||    
T  25099267 tcatatacattgtagatgtagtagacaaaaacaaatctgaatgcatatcaaagagaataaaacatgtggtcacaaatatatgcagatgttggaattcgaa 25099366  T
Q  227 cc 228  Q
    ||    
T  25099367 cc 25099368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 25158357 - 25158458
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||    
T  25158357 tcatatacattgtagatgtagtagacaaaaacaaatctgaatgcatatcaaagagaataaaacatgtggtcacaaatatatgcagatgttggaattcgaa 25158456  T
Q  227 cc 228  Q
    ||    
T  25158457 cc 25158458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 29275814 - 29275721
Alignment:
Q  135 attgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    ||||||||| || ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29275814 attgtagatgtaatagacaaaaacaaatttcaatgcatatcaaagagaatgaaacatgtggtcccaaatatatgcagatgttggaattcgaacc 29275721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 33375962 - 33375859
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtg--gtcccaaatatatgcagatgttggaattcg 224  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||  ||||||||||||||||||||||||||||||    
T  33375962 tcatatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaataaaacatgtggtgtcccaaatatatgcagatgttggaattcg 33375863  T
Q  225 aacc 228  Q
    ||||    
T  33375862 aacc 33375859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 17913907 - 17913838
Alignment:
Q  159 aaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||    
T  17913907 aaatctcaatgcatatcaaagagaataaaacatgtggtcccaaatatatgtagatgttggaattcgaacc 17913838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 6120750 - 6120649
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6120750 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 6120651  T
Q  227 cc 228  Q
    ||    
T  6120650 cc 6120649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 18351749 - 18351648
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18351749 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 18351650  T
Q  227 cc 228  Q
    ||    
T  18351649 cc 18351648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 27944827 - 27944928
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27944827 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 27944926  T
Q  227 cc 228  Q
    ||    
T  27944927 cc 27944928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 41663435 - 41663334
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41663435 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 41663336  T
Q  227 cc 228  Q
    ||    
T  41663335 cc 41663334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 41664708 - 41664607
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41664708 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 41664609  T
Q  227 cc 228  Q
    ||    
T  41664608 cc 41664607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 44902279 - 44902178
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44902279 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 44902180  T
Q  227 cc 228  Q
    ||    
T  44902179 cc 44902178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 42442162 - 42442063
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42442162 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 42442063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 8700459 - 8700358
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8700459 tcatatacattgtagatgtagtagacaaaaacaaatttcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 8700360  T
Q  227 cc 228  Q
    ||    
T  8700359 cc 8700358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 19596394 - 19596495
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19596394 tcatatacattgtagatgtagtagacaaaaacaaatctcaatgcatattaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 19596493  T
Q  227 cc 228  Q
    ||    
T  19596494 cc 19596495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 20545023 - 20544922
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  20545023 tcatatacattgtagatatggtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttagaattcgaa 20544924  T
Q  227 cc 228  Q
    ||    
T  20544923 cc 20544922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 31424207 - 31424106
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31424207 tcatatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgtagatgttggaattcgaa 31424108  T
Q  227 cc 228  Q
    ||    
T  31424107 cc 31424106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 692233 - 692334
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  692233 tcatatacattgtaaatgtagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatatggtcccaaatatatgcagatgttggaattcgaa 692332  T
Q  227 cc 228  Q
    ||    
T  692333 cc 692334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 42055395 - 42055294
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  42055395 tcatatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaataggtgatcccaaatatatgcagatgttggaattcgaa 42055296  T
Q  227 cc 228  Q
    ||    
T  42055295 cc 42055294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 36279485 - 36279584
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36279485 tcatatacattgtagatgtagtagacaaaaacaaatatcaatgtatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 36279584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 34007748 - 34007841
Alignment:
Q  135 attgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  34007748 attgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtagtcccaaatatatgccgatgttggaattcgaacc 34007841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 26231292 - 26231391
Alignment:
Q  129 atatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    ||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  26231292 atatacattgtagatgtagtagacaaaaacaaatttcaatgcatatcaaagagaatgaaatatgtggtctcaaatatattcagatgttggaattcgaacc 26231391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 999262 - 999363
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    |||||||  |||||||| ||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||    
T  999262 tcatatactttgtagatgtagtagataaaaacaaatctcaatgcatatcaaagagaataaaacatgtggtcccaaatatatgtagatgttggaattcgaa 999361  T
Q  227 cc 228  Q
    ||    
T  999362 cc 999363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 137 - 228
Target Start/End: Complemental strand, 16215012 - 16214921
Alignment:
Q  137 tgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||    
T  16215012 tgtagatgtagtagacaaaaataaatctcaatgcatatcaaagagaatgaaatatgtggtccaaaatatatgcaaatgtaggaattcgaacc 16214921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 4266579 - 4266478
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4266579 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 4266480  T
Q  227 cc 228  Q
    ||    
T  4266479 cc 4266478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 31018231 - 31018332
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31018231 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 31018330  T
Q  227 cc 228  Q
    ||    
T  31018331 cc 31018332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 34888717 - 34888818
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34888717 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 34888816  T
Q  227 cc 228  Q
    ||    
T  34888817 cc 34888818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 38913778 - 38913879
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38913778 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 38913877  T
Q  227 cc 228  Q
    ||    
T  38913878 cc 38913879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 50151258 - 50151157
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50151258 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 50151159  T
Q  227 cc 228  Q
    ||    
T  50151158 cc 50151157  T

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Target: chr1; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 50326199 - 50326098
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50326199 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 50326100  T
Q  227 cc 228  Q
    ||    
T  50326099 cc 50326098  T

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Target: chr1; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 1231994 - 1231893
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1231994 tcatatacattgtaaatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 1231895  T
Q  227 cc 228  Q
    ||    
T  1231894 cc 1231893  T

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Target: chr1; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 35614265 - 35614165
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35614265 tcatatacattgtaaatgtagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 35614166  T
Q  227 c 227  Q
    |    
T  35614165 c 35614165  T

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Target: chr1; HSP #9
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 38444829 - 38444729
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38444829 tcatatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttgaaattcgaa 38444730  T
Q  227 c 227  Q
    |    
T  38444729 c 38444729  T

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Target: chr1; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 9216229 - 9216128
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  9216229 tcatatacattgtagatatagtagataaaaacaaatctcaatgcatatcaaagagaataaaacatgtggtcccaaatatatgcagatgttggaattcgaa 9216130  T
Q  227 cc 228  Q
    ||    
T  9216129 cc 9216128  T

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Target: chr1; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 23482738 - 23482839
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23482738 tcatatacattgtagatgtagtagacaaatacaaatctcaatgcatatcaaagagcatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 23482837  T
Q  227 cc 228  Q
    ||    
T  23482838 cc 23482839  T

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Target: chr1; HSP #12
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 2951397 - 2951498
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| |||||| ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2951397 tcatatacattgtaaatataataaacaaaaaaaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 2951496  T
Q  227 cc 228  Q
    ||    
T  2951497 cc 2951498  T

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Target: chr1; HSP #13
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 18706540 - 18706640
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18706540 tcatatacattgtagatgtagtagacaaaaacaaatcttaatgcatatcaaagagaatgaaatatgtggt-ccaaatatatgcagatgttggaattcgaa 18706638  T
Q  227 cc 228  Q
    ||    
T  18706639 cc 18706640  T

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Target: chr1; HSP #14
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 39728169 - 39728077
Alignment:
Q  136 ttgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  39728169 ttgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaataaaacatgtggtcccaaatatatgcagatgttggaattcgaacc 39728077  T

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Target: chr1; HSP #15
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 7334140 - 7334041
Alignment:
Q  129 atatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    ||||| || |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  7334140 atatagatggtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaataaaatatgtggtcccaaatatatgcagatgttggaattcaaacc 7334041  T

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Target: chr1; HSP #16
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 35615005 - 35614912
Alignment:
Q  135 attgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    |||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35615005 attgtaaatgtagtagacaaaaacaaatcttaatgcatatcaaagagaatgaaatatgtggtctcaaatatatgcagatgttggaattcgaacc 35614912  T

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Target: chr1; HSP #17
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 52687145 - 52687246
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  52687145 tcatatacattgtagatgtagtatacaaaaacaaatctcaatgcctatgaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaatccgaa 52687244  T
Q  227 cc 228  Q
    ||    
T  52687245 cc 52687246  T

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Target: chr1; HSP #18
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 5061419 - 5061335
Alignment:
Q  129 atatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagat 213  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5061419 atatacattgtagatgtagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagat 5061335  T

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Target: chr1; HSP #19
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 139 - 228
Target Start/End: Original strand, 19764593 - 19764682
Alignment:
Q  139 tagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    ||||| ||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  19764593 tagatgtagtatacaaaaacaaatctcaatgcatattaaaaagaatgaaatatgtggtcccaaatatatgcaaatgtttgaattcgaacc 19764682  T

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Target: chr1; HSP #20
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 18855264 - 18855364
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| |||||||||  ||||||||||  ||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||| ||||||||    
T  18855264 tcatatacattgtagatgcagtagacaaat-caaatctcaatgcatatcaaagagaataaaacatgtggtcccaaatatatgtagatgttgaaattcgaa 18855362  T
Q  227 cc 228  Q
    ||    
T  18855363 cc 18855364  T

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Target: chr1; HSP #21
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 29942216 - 29942153
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaata 190  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29942216 tcatatacattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaata 29942153  T

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Target: scaffold0022 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 127 - 227
Target Start/End: Original strand, 149081 - 149181
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  149081 tcatataaattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 149180  T
Q  227 c 227  Q
    |    
T  149181 c 149181  T

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Target: scaffold0836 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 5310 - 5410
Alignment:
Q  128 catatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaac 227  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5310 catatacattgtagatataatagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaac 5409  T
Q  228 c 228  Q
    |    
T  5410 c 5410  T

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Target: scaffold0515 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 6092 - 6193
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6092 tcatatacattgtagatgttgtagacaaaaacatatctcaatgcatatcaaagagaatgaaatatgtggtctcaaatatatgcagatgttggaattcgaa 6191  T
Q  227 cc 228  Q
    ||    
T  6192 cc 6193  T

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Target: scaffold0306 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 6102 - 6203
Alignment:
Q  127 tcatatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaa 226  Q
    ||||||| ||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6102 tcatatacattgtagatgttgtagacaaaaacatatctcaatgcatatcaaagagaatgaaatatgtggtctcaaatatatgcagatgttggaattcgaa 6201  T
Q  227 cc 228  Q
    ||    
T  6202 cc 6203  T

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Target: scaffold0173 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 130 - 228
Target Start/End: Complemental strand, 19542 - 19444
Alignment:
Q  130 tatatattgtagatatagtagacaaaaacaaatctcaatgcatatcaaagagaatgaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 228  Q
    |||| ||||||||| |||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  19542 tatacattgtagatgtagtagacaaaaacaaatctcaatgcatattaaagataattaaatatgtggtcccaaatatatgcagatgttggaattcgaacc 19444  T

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