View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1556_low_9 (Length: 251)
Name: NF1556_low_9
Description: NF1556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1556_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 80 - 234
Target Start/End: Original strand, 26650111 - 26650265
Alignment:
| Q |
80 |
ataagcaaaattgaccatttcacactttttaaggaatgtgatcattgttatttaatttaaactaaaataccaaatttaccctcatgacaattcttgttgt |
179 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26650111 |
ataagcaaaattgaccatttcacactttttaaggaatgtgatcattgttatttaatttaaactaaaataccaaatttaccctcatgacaattcttgttgt |
26650210 |
T |
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| Q |
180 |
ccaacctactcatgttctttcattaaataaagtgtctagttttacatttttcatg |
234 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
26650211 |
ccaacctactcatgttctttcattaaataaagtgcctagttttatatttttcatg |
26650265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 80 - 213
Target Start/End: Complemental strand, 48079805 - 48079671
Alignment:
| Q |
80 |
ataagcaaaattgaccatttcacactttttaaggaatgtgatcattgttatttaatttaaactaaaataccaaatttaccctcatgacaattcttgttgt |
179 |
Q |
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||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||| |||||| || ||||| ||||||||||||||||||||| |
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| T |
48079805 |
ataagcaaaattgactatttcacactctttaaggaatgtggtcattgttatttaatttaagctaaaaggcctaatttgccctcatgacaattcttgttgg |
48079706 |
T |
|
| Q |
180 |
ccaacc-tactcatgttctttcattaaataaagtg |
213 |
Q |
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| T |
48079705 |
ccaaccgtattcatgttctttcattaaataaagtg |
48079671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 80 - 230
Target Start/End: Complemental strand, 43873785 - 43873635
Alignment:
| Q |
80 |
ataagcaaaattgaccatttcacactttttaaggaatgtgatcattgttatttaatttaaactaaaataccaaatttaccctcatgacaattcttgttgt |
179 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43873785 |
ataagcaaaattgaccatttcacactttttaagaaatgtgatcattgttatttaatttaaactaaaataccaaatttgccctcatgacaattcttgttgt |
43873686 |
T |
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| Q |
180 |
ccaacctactcatgttctttcattaaataaagtgtctagttttacattttt |
230 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43873685 |
ccaacctactcatgttctttcattaaataaagtgcctagttttacattttt |
43873635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 80 - 234
Target Start/End: Complemental strand, 3056048 - 3055894
Alignment:
| Q |
80 |
ataagcaaaattgaccatttcacactttttaaggaatgtgatcattgttatttaatttaaactaaaataccaaatttaccctcatgacaattcttgttgt |
179 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| |
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| T |
3056048 |
ataagcaaaattgatcatttcacactttttaaggaatgtgattattgttatttaatttaaactaaaataccaaatttgcccccatgacacttcttgttgt |
3055949 |
T |
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| Q |
180 |
ccaacctactcatgttctttcattaaataaagtgtctagttttacatttttcatg |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3055948 |
ccaacctactcatgttctttcattaaataaagtgcctagttttacatttttcatg |
3055894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 80 - 234
Target Start/End: Complemental strand, 32379272 - 32379117
Alignment:
| Q |
80 |
ataagcaaaattgaccatttcacactttttaaggaatgtgatcattgttatttaatttaaactaaaataccaaatttaccctcatgacaattcttgttgt |
179 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||| | ||||| || ||||| ||||||||||| |
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| T |
32379272 |
ataagcaaaattgatcatttcacactttttaaggaatgtggtcattgttatttaatttaagctaaaatgtctaatttgccgtcatggcaattcttgtttc |
32379173 |
T |
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| Q |
180 |
ccaacc-tactcatgttctttcattaaataaagtgtctagttttacatttttcatg |
234 |
Q |
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|||||| || ||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
32379172 |
ccaaccgtattcatgttctttcattaaataaagtgcctaattttacatttttcatg |
32379117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 107 - 230
Target Start/End: Original strand, 50745348 - 50745471
Alignment:
| Q |
107 |
tttaaggaatgtgatcattgttatttaatttaaactaaaataccaaatttaccctcatgacaattcttgttgtccaacctactcatgttctttcattaaa |
206 |
Q |
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||||| ||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50745348 |
tttaaagaatgtgatcaatgttatttaatttaaattaaaatactaaatttgccctcatgacaattcttgttgtccaacctactcatgttctttcattaaa |
50745447 |
T |
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| Q |
207 |
taaagtgtctagttttacattttt |
230 |
Q |
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||||||| |||||||||||||||| |
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| T |
50745448 |
taaagtgcctagttttacattttt |
50745471 |
T |
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