View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15570_high_4 (Length: 402)
Name: NF15570_high_4
Description: NF15570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15570_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 372
Target Start/End: Complemental strand, 52512210 - 52511842
Alignment:
| Q |
13 |
taataataatattcttcttccttattataatactacttttcattt----------aggtgatatgtgtggtggtacaggaaaatggaaagctcttaacag |
102 |
Q |
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| T |
52512210 |
taataataataatattcttccttattataatactacttttcatttcatttcatttaggtgatatgtgtggtggtacaggaaaatggaaagctcttaacag |
52512111 |
T |
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| Q |
103 |
gaagcgagcacaagatgtttatgaatttactgaatgtcctaattgttatggtatcattcattcttctactttgctcatttcnnnnnnnncttagtaaacg |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
52512110 |
gaagcgagcacaagatgtttatgaatttactgaatgtcctaattgttatggtatcattcattcttctaatttgctcatttcttttttt-cttagtaaacg |
52512012 |
T |
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| Q |
203 |
actaaattgacagattttccgtaggtcgaggaaagcttgtctgccctgtttgtttaggaactggtgtgccaaacaataaaggtcttctcaggaggcctga |
302 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512011 |
actaaattgactgattttccgtaggtcgaggaaagcttgtctgccctgtttgtttaggaactggtgtgccaaacaataaaggtcttctcaggaggcctga |
52511912 |
T |
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| Q |
303 |
cgcaaagaaactgcttgataagatgtataatggacgcctacttccaaattcttagaaggtatgtatacta |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52511911 |
cgcaaagaaactgcttgataagatgtataatggacgcctacttcccaattcttagaaggtatgtatacta |
52511842 |
T |
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