View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15570_high_6 (Length: 350)
Name: NF15570_high_6
Description: NF15570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15570_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 30 - 329
Target Start/End: Original strand, 31541544 - 31541835
Alignment:
| Q |
30 |
aaaaattcatgtaaattgtaannnnnnnngaaggaatgtaaattgtaattgtaatatgaatagaggtggatcatggaccaatatatatatnnnnnnnnnn |
129 |
Q |
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| T |
31541544 |
aaaaattcatgtaaattgtaattttttttgaaggaatgtaaattgcaattgtaatatgaatagaggtggatcatggaccaatatatatataaaaaaa--- |
31541640 |
T |
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| Q |
130 |
nnnnnngatgatcttaaattaattattaacgaggttgaaccc-ttttcaagctactgttcccattagcactattgttaacacttaacagagtataccatc |
228 |
Q |
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| T |
31541641 |
------gatgatcttaaattaattattaacgaggttgaaccccttttcaagccactgttcccattagcattattgttaacacttaacagagtataccatc |
31541734 |
T |
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| Q |
229 |
aactattataggctgtaaagagagggcaacaatataatgcgatcaaagatcacttaatttgattacttttcccatcaaatttttcatgaaaaatctaaga |
328 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31541735 |
aactattataggctgtaaagagagaacaacaatataatgcgatcaaagatcacttaatttgattgcttttcccatcaaatttttcatgaaaaatctaaga |
31541834 |
T |
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