View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15571_high_6 (Length: 314)

Name: NF15571_high_6
Description: NF15571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15571_high_6
NF15571_high_6
[»] chr2 (17 HSPs)
chr2 (88-314)||(7319930-7320156)
chr2 (88-314)||(31666-31891)
chr2 (88-314)||(24572883-24573109)
chr2 (88-314)||(28972484-28972709)
chr2 (88-314)||(22581425-22581647)
chr2 (88-314)||(4449720-4449944)
chr2 (88-314)||(22691441-22691666)
chr2 (88-314)||(22696088-22696313)
chr2 (88-314)||(269632-269856)
chr2 (92-272)||(720879-721057)
chr2 (173-314)||(721000-721139)
chr2 (173-314)||(22787529-22787667)
chr2 (104-314)||(36892200-36892403)
chr2 (88-146)||(24088972-24089030)
chr2 (104-314)||(25877458-25877661)
chr2 (92-149)||(19435066-19435123)
chr2 (92-149)||(43641336-43641393)
[»] scaffold0808 (1 HSPs)
scaffold0808 (88-314)||(2960-3184)
[»] chr3 (28 HSPs)
chr3 (88-314)||(14287537-14287762)
chr3 (88-314)||(12562970-12563195)
chr3 (89-287)||(14291897-14292095)
chr3 (88-314)||(40938175-40938399)
chr3 (88-314)||(11062526-11062750)
chr3 (88-314)||(17137911-17138134)
chr3 (89-287)||(35122131-35122329)
chr3 (92-314)||(11883758-11883978)
chr3 (103-314)||(53900011-53900221)
chr3 (92-314)||(12951500-12951720)
chr3 (130-314)||(39654402-39654584)
chr3 (103-256)||(14522897-14523050)
chr3 (88-314)||(14296941-14297166)
chr3 (88-314)||(14302568-14302793)
chr3 (130-256)||(15516180-15516305)
chr3 (194-314)||(14522798-14522917)
chr3 (104-273)||(6148335-6148500)
chr3 (102-247)||(17099136-17099279)
chr3 (102-314)||(16183504-16183710)
chr3 (88-220)||(17536533-17536665)
chr3 (173-314)||(15516264-15516403)
chr3 (188-314)||(17099262-17099382)
chr3 (88-189)||(11199103-11199203)
chr3 (220-314)||(17523899-17523991)
chr3 (130-274)||(30204944-30205085)
chr3 (88-149)||(14060835-14060896)
chr3 (88-149)||(47786463-47786524)
chr3 (92-149)||(38812589-38812646)
[»] chr4 (16 HSPs)
chr4 (88-314)||(13811121-13811346)
chr4 (88-287)||(18495925-18496123)
chr4 (88-314)||(45460447-45460670)
chr4 (88-314)||(30235982-30236206)
chr4 (92-313)||(52266961-52267180)
chr4 (92-314)||(15043388-15043608)
chr4 (92-314)||(15110816-15111036)
chr4 (92-314)||(43282878-43283098)
chr4 (130-314)||(44054410-44054590)
chr4 (102-273)||(33738686-33738855)
chr4 (88-178)||(16395671-16395761)
chr4 (247-314)||(13751784-13751850)
chr4 (104-314)||(44345290-44345495)
chr4 (173-271)||(33738798-33738893)
chr4 (92-149)||(14899990-14900047)
chr4 (92-148)||(41257951-41258007)
[»] chr6 (12 HSPs)
chr6 (88-314)||(22866618-22866842)
chr6 (88-314)||(28196273-28196498)
chr6 (88-314)||(25368850-25369073)
chr6 (110-314)||(18397397-18397600)
chr6 (92-311)||(15738702-15738919)
chr6 (173-314)||(32897260-32897397)
chr6 (103-233)||(13016350-13016480)
chr6 (102-273)||(18422258-18422427)
chr6 (199-262)||(7828828-7828891)
chr6 (104-242)||(25646425-25646561)
chr6 (92-149)||(22846639-22846696)
chr6 (208-314)||(25646317-25646418)
[»] chr7 (20 HSPs)
chr7 (88-314)||(15629216-15629441)
chr7 (90-309)||(16571591-16571808)
chr7 (90-309)||(16593854-16594071)
chr7 (88-314)||(49049295-49049511)
chr7 (88-314)||(13273188-13273413)
chr7 (92-314)||(10862350-10862570)
chr7 (88-314)||(12249606-12249830)
chr7 (135-299)||(11285703-11285868)
chr7 (102-270)||(15823984-15824149)
chr7 (102-273)||(44863666-44863835)
chr7 (105-274)||(142094-142261)
chr7 (102-273)||(47288199-47288368)
chr7 (173-314)||(15823903-15824038)
chr7 (169-314)||(47288307-47288446)
chr7 (173-274)||(18305332-18305430)
chr7 (92-149)||(9058230-9058287)
chr7 (130-273)||(12545283-12545421)
chr7 (216-314)||(13867567-13867660)
chr7 (102-200)||(13867635-13867733)
chr7 (173-314)||(44863778-44863914)
[»] chr1 (9 HSPs)
chr1 (88-314)||(51657820-51658045)
chr1 (88-314)||(35523916-35524141)
chr1 (92-314)||(27673300-27673520)
chr1 (92-299)||(20956476-20956682)
chr1 (92-314)||(22836746-22836966)
chr1 (88-314)||(21716648-21716873)
chr1 (102-314)||(49966106-49966316)
chr1 (182-314)||(22407691-22407819)
chr1 (102-247)||(22407796-22407939)
[»] chr8 (16 HSPs)
chr8 (92-314)||(17730954-17731172)
chr8 (94-314)||(38532099-38532318)
chr8 (88-310)||(21679647-21679867)
chr8 (88-314)||(28543381-28543606)
chr8 (92-314)||(18768256-18768477)
chr8 (144-314)||(20655513-20655682)
chr8 (95-314)||(22737372-22737587)
chr8 (102-314)||(19994641-19994847)
chr8 (191-287)||(20648954-20649049)
chr8 (102-273)||(25120967-25121134)
chr8 (220-313)||(20568758-20568848)
chr8 (220-313)||(20574951-20575041)
chr8 (173-314)||(25121078-25121212)
chr8 (102-192)||(16416765-16416855)
chr8 (92-149)||(37655243-37655300)
chr8 (88-128)||(20655684-20655724)
[»] scaffold0589 (1 HSPs)
scaffold0589 (88-314)||(6327-6552)
[»] scaffold0014 (1 HSPs)
scaffold0014 (88-314)||(145374-145598)
[»] scaffold0031 (2 HSPs)
scaffold0031 (88-314)||(30523-30746)
scaffold0031 (88-149)||(68834-68895)
[»] chr5 (14 HSPs)
chr5 (91-314)||(19404029-19404250)
chr5 (88-314)||(23453395-23453620)
chr5 (88-314)||(23464900-23465125)
chr5 (88-314)||(24184703-24184928)
chr5 (92-314)||(3672442-3672662)
chr5 (88-271)||(23460639-23460822)
chr5 (103-314)||(11338356-11338565)
chr5 (102-314)||(21392653-21392859)
chr5 (92-226)||(5452353-5452487)
chr5 (210-314)||(5452308-5452410)
chr5 (207-274)||(28258112-28258177)
chr5 (135-274)||(21652929-21653064)
chr5 (96-149)||(21615529-21615582)
chr5 (92-149)||(24227065-24227122)
[»] scaffold0092 (1 HSPs)
scaffold0092 (88-314)||(1863-2088)
[»] scaffold0021 (4 HSPs)
scaffold0021 (88-314)||(10109-10334)
scaffold0021 (164-314)||(76910-77054)
scaffold0021 (210-314)||(87013-87112)
scaffold0021 (104-256)||(76810-76959)
[»] scaffold0022 (2 HSPs)
scaffold0022 (88-314)||(108097-108320)
scaffold0022 (88-138)||(113891-113941)
[»] scaffold0103 (1 HSPs)
scaffold0103 (88-314)||(32034-32253)
[»] scaffold0090 (1 HSPs)
scaffold0090 (146-314)||(6139-6305)
[»] scaffold0001 (1 HSPs)
scaffold0001 (130-314)||(71943-72123)
[»] scaffold0342 (1 HSPs)
scaffold0342 (88-314)||(4287-4512)
[»] scaffold0124 (2 HSPs)
scaffold0124 (183-314)||(23190-23320)
scaffold0124 (103-187)||(26502-26585)
[»] scaffold0150 (2 HSPs)
scaffold0150 (114-314)||(20171-20368)
scaffold0150 (114-314)||(27000-27197)
[»] scaffold0338 (1 HSPs)
scaffold0338 (104-314)||(7255-7463)
[»] scaffold0008 (4 HSPs)
scaffold0008 (102-247)||(21083-21226)
scaffold0008 (102-247)||(28673-28816)
scaffold0008 (173-272)||(21194-21290)
scaffold0008 (173-314)||(28784-28918)
[»] scaffold0359 (1 HSPs)
scaffold0359 (102-273)||(13310-13479)
[»] scaffold0673 (1 HSPs)
scaffold0673 (150-274)||(2369-2491)
[»] scaffold0011 (1 HSPs)
scaffold0011 (104-314)||(256399-256603)
[»] scaffold0521 (2 HSPs)
scaffold0521 (92-207)||(7089-7204)
scaffold0521 (192-312)||(7150-7265)
[»] scaffold0037 (2 HSPs)
scaffold0037 (164-314)||(26215-26359)
scaffold0037 (104-256)||(26310-26459)
[»] scaffold0750 (1 HSPs)
scaffold0750 (103-187)||(2799-2882)
[»] scaffold0044 (1 HSPs)
scaffold0044 (164-274)||(94807-94914)
[»] scaffold0243 (1 HSPs)
scaffold0243 (88-149)||(3893-3954)
[»] scaffold0692 (1 HSPs)
scaffold0692 (104-274)||(923-1089)
[»] scaffold0480 (1 HSPs)
scaffold0480 (102-314)||(6852-7058)
[»] scaffold0292 (1 HSPs)
scaffold0292 (104-178)||(18108-18182)
[»] scaffold0251 (1 HSPs)
scaffold0251 (246-314)||(15353-15418)
[»] scaffold0193 (1 HSPs)
scaffold0193 (92-149)||(3268-3325)
[»] scaffold0190 (1 HSPs)
scaffold0190 (88-149)||(8585-8646)
[»] scaffold0080 (1 HSPs)
scaffold0080 (92-149)||(25210-25267)


Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 7319930 - 7320156
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||| ||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7319930 gatgtgtacctagttcgacacatatatgcatgtggtaccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctctgcaaggctgaagcc 7320029  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||    
T  7320030 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactatatcactaaatgatctctgttaggccggagcccaatgatgcaacaaaaa 7320129  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
    |||||||||||||||||||||||||||    
T  7320130 tatcatataaaaatctcaacacgacta 7320156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 88 - 314
Target Start/End: Complemental strand, 31891 - 31666
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| ||||||    
T  31891 gatgtgcacctagttcgacacatatatgcatgtggtaccatttcacttcaaggtcgtcacatatatctagaccgccaaatgtctatgcaaggccgaagcc 31792  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
     ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  31791 tacaatctagatcactaatggatctctgcaagaccgaagtccacaaaactagatcactaaatgatctctactaggccggagcccaatgattcaacaaaaa 31692  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     ||||||| ||||||||||||||||||    
T  31691 catcatat-aaaatctcaacacgacta 31666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 88 - 314
Target Start/End: Complemental strand, 24573109 - 24572883
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtca-cctatatctagaccgccaaaggtctttgcaaggctgaagc 186  Q
    ||||||||||||||||||| |||||| ||||||  |||||||||||||||||||||||| ||||||||||||||  ||||||||  |||||||| |||||    
T  24573109 gatgtgcacctagttcgacccatatatgcatgtggtaccatttcacttcaaggtcgtcaacctatatctagaccttcaaaggtcactgcaaggccgaagc 24573010  T
Q  187 ccacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaa 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  24573009 ccacaatctagatcactaatggatctctgcaagaccgaagtccacaaaactagatcactaaatgatctcttttaggccggagcccaatgatgcaacataa 24572910  T
Q  287 atatcatataaaaatctcaacacgacta 314  Q
    | ||||||| |||||||||||| |||||    
T  24572909 acatcatat-aaaatctcaacatgacta 24572883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 28972484 - 28972709
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||| ||||||  ||||||||||| ||||||  ||||||||||||||||||||||||| || |||||||||| ||||||||| |||||||| | ||||    
T  28972484 gatgtgtacctagcccgacacatatatgcatgtggtaccatttcacttcaaggtcgtcacatacatctagaccgtcaaaggtctctgcaaggccggagcc 28972583  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  28972584 cacaatctagatcactaatggatctctgcaagaccgaagtccacaaaattagatcactcaatgatctctgctaggccggagcccaatgatgcaacaaaaa 28972683  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     ||||||| ||||||||||||||||||    
T  28972684 catcatat-aaaatctcaacacgacta 28972709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 88 - 314
Target Start/End: Complemental strand, 22581647 - 22581425
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||||||||||| ||||||||| | ||||||  ||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| ||||||    
T  22581647 gatgtgcacctagtccgacacataaatgcatgtggtaccatttcacttcaaggtcgtcacctatatctagaccgtcaa-ggtctctgcaaggccgaagcc 22581549  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||| ||| ||||| ||||||||||||||||||||||||    
T  22581548 cacaatctagatctctaatggatctctgcaagaccgaagtccacaa-actagatcact-aatgatttctgctaggtcggagcccaatgatgcaacaaaaa 22581451  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     ||||||| ||||||||||||||||||    
T  22581450 catcatat-aaaatctcaacacgacta 22581425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 88 - 314
Target Start/End: Complemental strand, 4449944 - 4449720
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||| ||||||  ||||||||||| ||||||  ||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||| | ||||    
T  4449944 gatgtgtacctagaccgacacatatatgcatgtggtaccatttcacttcaaggtcgtcacctatttctagaccgtcaaaggtctctgcaaggccggagcc 4449845  T
Q  188 cac-aatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaa 286  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  4449844 cacaaatctagatcactaa-ggatctctgcaagaccgaagtccacaa-actagatcactaaatgatctctgctaggccggagcccaaagatgcaacaaaa 4449747  T
Q  287 atatcatataaaaatctcaacacgacta 314  Q
    | ||| |||  |||||||||| ||||||    
T  4449746 acatcttat-caaatctcaactcgacta 4449720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 88 - 314
Target Start/End: Complemental strand, 22691666 - 22691441
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||| ||||||  ||||||||||| ||||||  |||||| |||| |||||||| ||||||||||| |||||| ||||||||| || ||||| ||||||    
T  22691666 gatgtgtacctagaccgacacatatatgcatgtggtaccatatcacctcaaggtcttcacctatatccagaccgtcaaaggtctctgtaaggccgaagcc 22691567  T
Q  188 cacaa-tctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaa 286  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||| ||||||||||||||||||||    
T  22691566 cacaaatctagatcactaa-ggatctctgcaagaccgaagtccacaaaactagatcactaaatgatctctgttaggccgaagcccaatgatgcaacaaaa 22691468  T
Q  287 atatcatataaaaatctcaacacgacta 314  Q
    | |||||||  |||||||||||||||||    
T  22691467 acatcatat-caaatctcaacacgacta 22691441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 88 - 314
Target Start/End: Complemental strand, 22696313 - 22696088
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||| ||||||  ||||||||||| ||||||  |||||| |||| |||||||| ||||||||||| |||||| ||||||||| || ||||| ||||||    
T  22696313 gatgtgtacctagaccgacacatatatgcatgtggtaccatatcacctcaaggtcttcacctatatccagaccgtcaaaggtctctgtaaggccgaagcc 22696214  T
Q  188 cacaa-tctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaa 286  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||| ||||||||||||||||||||    
T  22696213 cacaaatctagatcactaa-ggatctctgcaagaccgaagtccacaaaactagatcactaaatgatctctgttaggccgaagcccaatgatgcaacaaaa 22696115  T
Q  287 atatcatataaaaatctcaacacgacta 314  Q
    | |||||||  |||||||||||||||||    
T  22696114 acatcatat-caaatctcaacacgacta 22696088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 269632 - 269856
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||| ||||||  ||||||||||| ||||||  ||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| | ||||    
T  269632 gatgtgtacctagaccgacacatatatgcatgtggtaccatttcacttcaaggtcgtcacttatatctagaccgtcaaaggtctctgcaaggccggagcc 269731  T
Q  188 cac-aatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaa 286  Q
    ||| |||||||||||| ||  |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||| ||||||||||||    
T  269732 cacaaatctagatcaccaa-agatctctgcaagaccgaagtccacaa-actagatcactaaatgatctctgctaggccagagcccaaagatgcaacaaaa 269829  T
Q  287 atatcatataaaaatctcaacacgacta 314  Q
    | ||| |||  |||||||||| ||||||    
T  269830 acatcttat-caaatctcaactcgacta 269856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 92 - 272
Target Start/End: Original strand, 720879 - 721057
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccaca 191  Q
    |||||||||||||||||||||| ||||||  |||||  || |||||||  ||||||||||||||||||| |||||||||| |||||||| ||||||||||    
T  720879 tgcacctagttcgacacatatatgcatgtggtaccaaatctcttcaagaacgtcacctatatctagaccaccaaaggtctctgcaaggccgaagcccaca 720978  T
Q  192 atctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagccca 272  Q
    ||||||||||||||| |||||||||||| |||||  |||||| ||||||||||||| |||||||| | |||||| ||||||    
T  720979 atctagatcactaat-gatctctgcaaggccgaaacccacaa-actagatcactaattgatctctgcaaggccgaagccca 721057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 173 - 314
Target Start/End: Original strand, 721000 - 721139
Alignment:
Q  173 tgcaaggctgaagcccacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagccca 272  Q
    |||||||| ||| ||||||| ||||||||||||| |||||||||||| |||||| |||||| ||||||||||||| |||||||| | |||||| | ||||    
T  721000 tgcaaggccgaaacccacaaactagatcactaattgatctctgcaaggccgaagcccacaa-actagatcactaattgatctctgcaaggccgaaaccca 721098  T
Q  273 atgatgcaacaaaaatatcatataaaaatctcaacacgacta 314  Q
    ||||||||||||||| ||||||| || |||||||||||||||    
T  721099 atgatgcaacaaaaacatcatat-aatatctcaacacgacta 721139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 173 - 314
Target Start/End: Complemental strand, 22787667 - 22787529
Alignment:
Q  173 tgcaaggctgaagcccacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagccca 272  Q
    |||||||| | |||||||||||||||||||||||||||||||||| |  | ||| |||||| |||||||||||||||||||||| | |||||| | ||||    
T  22787667 tgcaaggccggagcccacaatctagatcactaatggatctctgcaggctcaaagcccacaa-actagatcactaaatgatctctgcaaggccgaaaccca 22787569  T
Q  273 atgatgcaacaaaaatatcatataaaaatctcaacacgacta 314  Q
    ||||||||||||||| |||||||  || ||||||||||||||    
T  22787568 atgatgcaacaaaaacatcatat--aattctcaacacgacta 22787529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 104 - 314
Target Start/End: Complemental strand, 36892403 - 36892200
Alignment:
Q  104 gacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatcact 203  Q
    |||||||||| ||||||  |||||  |||| |||||||||||||||  ||| ||||| |||| ||||| |||||| | |||| |||||| |||||||||     
T  36892403 gacacatatatgcatgtggtaccaaatcacctcaaggtcgtcacctgaatccagaccaccaagggtctctgcaagaccgaagtccacaaactagatcaca 36892304  T
Q  204 aatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaatct 303  Q
    ||| |||||||||||| ||||||  | ||| |||||||||| || |||||||| ||||||||||||||||| |||  |  |||| ||||||| |||||||    
T  36892303 aat-gatctctgcaaggccgaag--cccaaaactagatcac-aattgatctctgctaggccggagcccaataatg--aataaaacatcatat-aaaatct 36892211  T
Q  304 caacacgacta 314  Q
    |||||| ||||    
T  36892210 caacacaacta 36892200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 24089030 - 24088972
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtca 146  Q
    |||||||||||||||||||||||||| ||||||  |||||  |||| ||||||||||||    
T  24089030 gatgtgcacctagttcgacacatatatgcatgtggtaccaaatcacctcaaggtcgtca 24088972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 314
Target Start/End: Complemental strand, 25877661 - 25877458
Alignment:
Q  104 gacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatcact 203  Q
    |||||||||| ||||||  |||||  || | |||||||||||||||  ||| ||||| |||| ||||| |||||| | |||| |||||| ||||||| |     
T  25877661 gacacatatatgcatgtggtaccaaatctcctcaaggtcgtcaccttaatccagaccaccaagggtctctgcaagaccgaagtccacaaactagatctc- 25877563  T
Q  204 aatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaatct 303  Q
    ||  |||||||||||||||| ||  | ||| |||||||| | |||| |||||| ||||| ||| ||||||| |||  |  |||| ||||||| |||||||    
T  25877562 aaaagatctctgcaagaccggag--cccaaaactagatctcaaaat-atctctgctaggtcggggcccaataatg--aataaaacatcatat-aaaatct 25877469  T
Q  304 caacacgacta 314  Q
    | |||||||||    
T  25877468 ccacacgacta 25877458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 19435123 - 19435066
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacct 149  Q
    |||||||||||||||||||||| ||||||  || ||  |||| |||||||||||||||    
T  19435123 tgcacctagttcgacacatatatgcatgtggtatcaaatcacctcaaggtcgtcacct 19435066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 43641336 - 43641393
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacct 149  Q
    |||||||||||||||||||||| ||||||  ||||   |||| |||||||||||||||    
T  43641336 tgcacctagttcgacacatatatgcatgtggtaccgaatcacctcaaggtcgtcacct 43641393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 88 - 314
Target Start/End: Complemental strand, 3184 - 2960
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||  ||||||    
T  3184 gatgtgtacctagttcgacacatatatgcatgtgataccatttcacttcaaggtcgtcacctatatctagaccgctaaaggtctctgcaaggtcgaagcc 3085  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  3084 cacaatctagatcactaatggatctctgcaagaccgaagtccacaaaactagatcactaaatgatctctgctaggccgaagcccaatgatgcaacaaaaa 2985  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     |||||||  |||||||||||||||||    
T  2984 catcatat--aaatctcaacacgacta 2960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 171; Significance: 8e-92; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 14287537 - 14287762
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||| ||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||  ||||||    
T  14287537 gatgtgtacctagttcgacacatatatgcatgtggtaccatttcacttcaaggtcgtcacctatatctagaccgtcaaaggtctctgcaaggacgaagcc 14287636  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  14287637 cacaatctagatcactaatggatctctgcaagaccgaagtccacaaaactagatcactaaatgatctatgctaggccggagcccaatgatgcaacaaaaa 14287736  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     ||||||| ||||||||||||||||||    
T  14287737 catcatat-aaaatctcaacacgacta 14287762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 88 - 314
Target Start/End: Complemental strand, 12563195 - 12562970
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||| || ||||||||| |||||||| ||||||    
T  12563195 gatgtgcacctagttcgacacatatatgcatgtggtaccatttcacttcaaggtcgtcacctatatctagatcgtcaaaggtctctgcaaggccgaagcc 12563096  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
     |||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12563095 tacaatctagatctctaatggatctctacaagaccgaagtccacaaaactagatcactaaatgatctctgctaggccggagcccaatgatgcaacaaaaa 12562996  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     ||||||| ||| ||||||||||||||    
T  12562995 catcatat-aaattctcaacacgacta 12562970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 89 - 287
Target Start/End: Original strand, 14291897 - 14292095
Alignment:
Q  89 atgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagccc 188  Q
    |||||||||||||||||| |||||| ||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||    
T  14291897 atgtgcacctagttcgacgcatatatgcatgtggtaccatttcacttcaaggtcgtcacctatatctagaccgtcaaaggtctctgcaaggccgaagccc 14291996  T
Q  189 acaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14291997 acaatctagatcactaatggatctctgcaagaccgaagtccacaaaactagatcactaaatgatctctgctaggccggagcccaatgatgcaacaaaaa 14292095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 40938175 - 40938399
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    ||||||||||||| |||||||||||| ||||||  ||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| ||||||    
T  40938175 gatgtgcacctagctcgacacatatatgcatgtggtaccatttcacttcaaggtcgtcacttatatctagaccgtcaaaggtctctgcaaggccgaagcc 40938274  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  40938275 cacaatctagatcactaatggatctctgaaagaccgaagtccacaaaactagatcactaaatgatctctgctaggtcggagcccaatgatgcaacaaaaa 40938374  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     |||||||   ||||||||||||||||    
T  40938375 catcatat--caatctcaacacgacta 40938399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 88 - 314
Target Start/End: Complemental strand, 11062750 - 11062526
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||||||||||||||||||||||| ||||||  |||| |||||||||||||||||||||||||||||||||  ||| ||||| |||||||| ||||||    
T  11062750 gatgtgcacctagttcgacacatatatgcatgtggtaccgtttcacttcaaggtcgtcacctatatctagaccatcaa-ggtctctgcaaggccgaagcc 11062652  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  11062651 cacaatctagatcactaatggatttctgcaagaccgaagtccacaaaactagatcactaaatgatctctgctaggccggagcccaatgatacaacaaaaa 11062552  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     ||||||| |||||||||||| |||||    
T  11062551 catcatat-aaaatctcaacatgacta 11062526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 17137911 - 17138134
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||||||||| ||| ||||||||| ||||||  ||||||||||||||||||| ||||||||||||||||||  ||||||||| |||||||| | ||||    
T  17137911 gatgtgcacctaattc-acacatatatgcatgtggtaccatttcacttcaaggttgtcacctatatctagaccatcaaaggtctctgcaaggccggagcc 17138009  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    ||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| |||| ||||||||||||||||    
T  17138010 caccatctagatcactaacggatctctgcaagaccgaagtccacaa-actagatcactaaatgatctctgcaaggccgaagcctaatgatgcaacaaaaa 17138108  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     ||||||| ||||||||||||||||||    
T  17138109 catcatat-aaaatctcaacacgacta 17138134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 89 - 287
Target Start/End: Original strand, 35122131 - 35122329
Alignment:
Q  89 atgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagccc 188  Q
    ||||||||||||| ||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||  | |||||    
T  35122131 atgtgcacctagtccgacacatatatgcatgtggtaccatttcacttcaaggtcgtcacctatatctagaccgtcaaaggtctctgcaaggtcggagccc 35122230  T
Q  189 ac-aatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    || ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| |||||||||||||    
T  35122231 acaaatctagatcactaa-ggatctctgcaagaccgaagtccacaaaactagatcactaaatgatctctgctatgccggagcccaaagatgcaacaaaaa 35122329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 92 - 314
Target Start/End: Complemental strand, 11883978 - 11883758
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccaca 191  Q
    |||||||||||||||||||||| ||||||  |||||  ||||||||| ||||||||||||||||||||| |||||||||| |||||||| |||||||| |    
T  11883978 tgcacctagttcgacacatatatgcatgtggtaccaaatcacttcaaagtcgtcacctatatctagaccaccaaaggtctctgcaaggccgaagcccaaa 11883879  T
Q  192 atctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatc 291  Q
    ||||||||||||||||||||||||||||  | ||| |||||| |||||||||||||||||||||| | |||||| ||||||||||||||||||||| |||    
T  11883878 atctagatcactaatggatctctgcaaggacaaagcccacaa-actagatcactaaatgatctctgcaaggccgaagcccaatgatgcaacaaaaacatc 11883780  T
Q  292 atataaaaatctcaacacgacta 314  Q
    |||  ||||||||||||||||||    
T  11883779 ata-caaaatctcaacacgacta 11883758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 103 - 314
Target Start/End: Complemental strand, 53900221 - 53900011
Alignment:
Q  103 cgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaa-tctagatca 201  Q
    |||| |||||| ||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | ||||||||| |||||||||    
T  53900221 cgacgcatatatgcatgtggtaccatttcacttcaaggtcgtcacctatatctagaccgtcaaaggtctctgcaaggccggagcccacaaatctagatca 53900122  T
Q  202 ctaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaat 301  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||| |||  ||||    
T  53900121 ctaa-ggatctctgcaagaccgaagtccacaaaactagatcactaaatgatctctgctaggccggagcccaaagatgcaacaaaaacatcttat-gaaat 53900024  T
Q  302 ctcaacacgacta 314  Q
    |||||| ||||||    
T  53900023 ctcaactcgacta 53900011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 92 - 314
Target Start/End: Original strand, 12951500 - 12951720
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccaca 191  Q
    ||||| |||||||||||||||| ||||||  ||||   ||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||    
T  12951500 tgcacgtagttcgacacatatatgcatgtggtaccgaatcacttcaaggtcgtcacctatatctagaccaccaaaggtctctgcaaggccgaagcccaca 12951599  T
Q  192 atctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatc 291  Q
    ||||| |||||||||||||||||  ||| || ||| |||||| ||||||| |||||||||||||| | |||| | ||||||||||||||||||||| |||    
T  12951600 atctatatcactaatggatctctcaaaggccaaagcccacaa-actagataactaaatgatctctgcaaggctgaagcccaatgatgcaacaaaaacatc 12951698  T
Q  292 atataaaaatctcaacacgacta 314  Q
    |||| |||||||| |||||||||    
T  12951699 atat-aaaatctcgacacgacta 12951720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 130 - 314
Target Start/End: Original strand, 39654402 - 39654584
Alignment:
Q  130 tcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatcactaatggatctctgcaagaccgaagtcc 229  Q
    |||||||||||| |||||||||||||||||| |||||||||| |||||| | |||||||||||||||||||||| |||||||||||||||  ||||| ||    
T  39654402 tcacttcaaggttgtcacctatatctagaccaccaaaggtctctgcaagaccgaagcccacaatctagatcactgatggatctctgcaaggtcgaagccc 39654501  T
Q  230 acaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaatctcaacacgacta 314  Q
    |||| |||||||||||||||||||||| | | |||| ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  39654502 acaa-actagatcactaaatgatctctgcaatgccgaagcccaatgatgcaacaaaaacatcatat-aaaatctcaacacgacta 39654584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 103 - 256
Target Start/End: Complemental strand, 14523050 - 14522897
Alignment:
Q  103 cgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatcac 202  Q
    ||||||||||| ||||||  |||||  |||| ||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||    
T  14523050 cgacacatatatgcatgtggtaccaaatcacctcaaggtcgtcacctatatctagaccgtcaaaggtctctgcaaggccgaagcccacaatctagatcac 14522951  T
Q  203 taatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctct 256  Q
    ||||||||||||||||||||||||||||||| |||||||||||||  |||||||    
T  14522950 taatggatctctgcaagaccgaagtccacaaaactagatcactaatggatctct 14522897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 14296941 - 14297166
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||| ||||||  |||||| |||| ||||||  |||||| |||| ||||||||||||||||||||||||||| ||||||||| |||||||| | ||||    
T  14296941 gatgtgtacctagaccgacacgtatatgcatgtggtaccatatcacctcaaggtcgtcacctatatctagaccgtcaaaggtctctgcaaggccggagcc 14297040  T
Q  188 cac-aatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaa 286  Q
    ||| ||||||| ||||||| ||||||||||||| |||||||||||||  |||||| |||||||||||||| |||||| ||||||||| ||||||||||||    
T  14297041 cacaaatctagttcactaa-ggatctctgcaaggccgaagtccacaaatctagatgactaaatgatctctgctaggctggagcccaaagatgcaacaaaa 14297139  T
Q  287 atatcatataaaaatctcaacacgacta 314  Q
    | ||| |||  |||||||||| ||||||    
T  14297140 acatcttat-taaatctcaactcgacta 14297166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 14302568 - 14302793
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||| ||||||  |||||| |||| ||||||  |||||| |||| ||||||||||||||||||||||||||| ||||||||| |||||||| | ||||    
T  14302568 gatgtgtacctagaccgacacgtatatgcatgtggtaccatatcacctcaaggtcgtcacctatatctagaccgtcaaaggtctctgcaaggccggagcc 14302667  T
Q  188 cac-aatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaa 286  Q
    ||| ||||||| ||||||| ||||||||||||| |||||||||||||  |||||| |||||||||||||| |||||| ||||||||| ||||||||||||    
T  14302668 cacaaatctagttcactaa-ggatctctgcaaggccgaagtccacaaatctagatgactaaatgatctctgctaggctggagcccaaagatgcaacaaaa 14302766  T
Q  287 atatcatataaaaatctcaacacgacta 314  Q
    | ||| |||  |||||||||| ||||||    
T  14302767 acatcttat-taaatctcaactcgacta 14302793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 130 - 256
Target Start/End: Original strand, 15516180 - 15516305
Alignment:
Q  130 tcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatcactaatggatctctgcaagaccgaagtcc 229  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||| | ||||||||||||| |||||||||||||||||||||| || ||| ||    
T  15516180 tcacttcaaggtcgtcacctatatctagaccaccaaaggtctctgcaaggccggagcccacaatctaaatcactaatggatctctgcaaggccaaagccc 15516279  T
Q  230 acaatactagatcactaaatgatctct 256  Q
    |||| |||||||||| |||||||||||    
T  15516280 acaa-actagatcaccaaatgatctct 15516305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 194 - 314
Target Start/End: Complemental strand, 14522917 - 14522798
Alignment:
Q  194 ctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcat 293  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||| ||||||||||||| || ||||||||| |||||    
T  14522917 ctagatcactaatggatctctgcaagaccgaagtccacaaaactagatcaccaaatgatctctgctaagccggagcccaataattcaacaaaaacatcat 14522818  T
Q  294 ataaaaatctcaacacgacta 314  Q
    ||  |||||||||||||||||    
T  14522817 at-caaatctcaacacgacta 14522798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 273
Target Start/End: Complemental strand, 6148500 - 6148335
Alignment:
Q  104 gacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatcact 203  Q
    |||||||||| ||||||  |||||  |||| |||||||||||||| | ||| ||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  6148500 gacacatatatgcatgtggtaccaaatcacctcaaggtcgtcaccca-atccagaccaccaagggtctctgcaaggccgaagcccacaatctagatcact 6148402  T
Q  204 aatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaa 273  Q
     ||||||||||||||||||||||||||||| ||||||||||  |||||||||| ||||| ||||||||||    
T  6148401 -atggatctctgcaagaccgaagtccacaa-actagatcac-caatgatctctgctaggtcggagcccaa 6148335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 102 - 247
Target Start/End: Original strand, 17099136 - 17099279
Alignment:
Q  102 tcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatca 201  Q
    |||||||||||| ||||||  |||||  || | ||||||| |||||| ||||||||||| |||| ||||| |||||||| ||||||||||||||||||||    
T  17099136 tcgacacatatatgcatgtggtaccaaatctcctcaaggttgtcacccatatctagaccaccaagggtctctgcaaggccgaagcccacaatctagatca 17099235  T
Q  202 ctaatggatctctgcaagaccgaagtccacaatactagatcactaa 247  Q
    || ||||||||||||||||||||||| ||||| |||||||||||||    
T  17099236 ct-atggatctctgcaagaccgaagttcacaa-actagatcactaa 17099279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 102 - 314
Target Start/End: Complemental strand, 16183710 - 16183504
Alignment:
Q  102 tcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaagg-ctgaagcccacaatctagatc 200  Q
    |||||||||||| ||||||  |||||  |||| |||| ||||||||| ||||| ||||| |||| | ||| ||||||| |||||||||| ||||||||||    
T  16183710 tcgacacatatatgcatgtggtaccaaatcacctcaaagtcgtcacccatatccagaccaccaaggatctctgcaaggcctgaagcccaaaatctagatc 16183611  T
Q  201 actaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaa 300  Q
    ||||| |||||||||||||||||||||| |||  |||||||||| ||||||||||| |||||||||||| |||| |||  |  |||| ||||||| ||||    
T  16183610 actaa-ggatctctgcaagaccgaagtctaca--actagatcac-aaatgatctctgctaggccggagcacaattatg--aataaaacatcatat-aaaa 16183518  T
Q  301 tctcaacacgacta 314  Q
    ||||||| ||||||    
T  16183517 tctcaacccgacta 16183504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 88 - 220
Target Start/End: Complemental strand, 17536665 - 17536533
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||| ||||||  ||||||||||| ||||||  |||||| |||| ||||||||||||||||||||||||| | ||||||||| |||||||| ||||||    
T  17536665 gatgtgtacctagaccgacacatatatgcatgtggtaccatatcacctcaaggtcgtcacctatatctagactgtcaaaggtctctgcaaggccgaagcc 17536566  T
Q  188 cacaa-tctagatcactaatggatctctgcaaga 220  Q
    ||||| ||||||||||||| |||||||| |||||    
T  17536565 cacaagtctagatcactaa-ggatctctacaaga 17536533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 173 - 314
Target Start/End: Original strand, 15516264 - 15516403
Alignment:
Q  173 tgcaaggctgaagcccacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagccca 272  Q
    ||||||||  |||||||||| ||||||||| ||  |||||||||||| | |||| |||||| |||||||||||||  ||||||| | || ||| ||||||    
T  15516264 tgcaaggccaaagcccacaaactagatcaccaaatgatctctgcaaggctgaagcccacaa-actagatcactaatggatctctccaagaccgaagccca 15516362  T
Q  273 atgatgcaacaaaaatatcatataaaaatctcaacacgacta 314  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  15516363 atgatgcaacaaaaacatcatat-aaaatctcaacacgacta 15516403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 188 - 314
Target Start/End: Original strand, 17099262 - 17099382
Alignment:
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||| |||| |||||  |||||||||| ||||||||||||||||| |||  |  ||||    
T  17099262 cacaaactagatcactaa-ggatctctgcaagaccgaagtccacaa-actatatcac-caatgatctctgctaggccggagcccaataatg--aataaaa 17099356  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     ||||||| ||||||||||||||||||    
T  17099357 catcatat-aaaatctcaacacgacta 17099382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 189
Target Start/End: Complemental strand, 11199203 - 11199103
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||||||||||  || |||||||| ||||||  ||||||||||||||||||||||||||||||||||||||  | ||||||| |||||||| | ||||    
T  11199203 gatgtgcacctagcccgccacatatatgcatgtggtaccatttcacttcaaggtcgtcacctatatctagaccatc-aaggtctctgcaaggccggagcc 11199105  T
Q  188 ca 189  Q
    ||    
T  11199104 ca 11199103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 220 - 314
Target Start/End: Complemental strand, 17523991 - 17523899
Alignment:
Q  220 accgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaatctcaacacgacta 314  Q
    |||||| ||||||| |||||||||||||||||||||| |||||||| |||||| |||| |||| |||| |||||||  |||||||||||||||||    
T  17523991 accgaattccacaaaactagatcactaaatgatctctgctaggccgtagcccattgattcaac-aaaacatcatat-caaatctcaacacgacta 17523899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 130 - 274
Target Start/End: Original strand, 30204944 - 30205085
Alignment:
Q  130 tcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatcactaatggatctctgcaagaccgaagtcc 229  Q
    |||| ||||||||||||||   ||| ||||| |||| ||||| |||||| |  ||| | |||| ||||||| | || | |||||||||||||||||||||    
T  30204944 tcacctcaaggtcgtcacccgaatccagaccaccaagggtctctgcaagaccaaagtctacaaactagatctcaaaag-atctctgcaagaccgaagtcc 30205042  T
Q  230 acaatactagatcactaaatgatctcttctaggccggagcccaat 274  Q
    |||  |||||||| | ||| ||||||| |||||||||||||||||    
T  30205043 aca--actagatctcaaaaagatctctgctaggccggagcccaat 30205085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 14060896 - 14060835
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacct 149  Q
    ||||||||||||||||||||| |||| |||||| ||||||  |||| |||||||||||||||    
T  14060896 gatgtgcacctagttcgacacgtatatgcatgtgataccaaatcacctcaaggtcgtcacct 14060835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 47786524 - 47786463
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacct 149  Q
    |||||||||||||||||||||||||| ||||||  ||| || |||| |||||||||||||||    
T  47786524 gatgtgcacctagttcgacacatatatgcatgtgttactatatcacctcaaggtcgtcacct 47786463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 38812646 - 38812589
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacct 149  Q
    |||||||||||||||||||||| ||||||  |||||  |||| |||||||||||||||    
T  38812646 tgcacctagttcgacacatatatgcatgtcgtaccaaatcacctcaaggtcgtcacct 38812589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 88 - 314
Target Start/End: Complemental strand, 13811346 - 13811121
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||  | ||||||    
T  13811346 gatgtgcacctagttcgacacatatatgcatgtggtaccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctctgcaataccgaagcc 13811247  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| |||||||||||||||||||||    
T  13811246 cacaatctagatcactaatggatctctgcaagaccgaagtccacaaaactagatcactaaatgatctatgctaggccgaagcccaatgatgcaacaaaaa 13811147  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     ||||||| |||||||||||| |||||    
T  13811146 catcatat-aaaatctcaacatgacta 13811121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 88 - 287
Target Start/End: Complemental strand, 18496123 - 18495925
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    ||||||||||||||| |||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||    
T  18496123 gatgtgcacctagtt-gacacatatatgcatgtggtaccatttcacttcaaggtcgtcacctatatctagaccgtcaaaggtctctgcaaggccgaagcc 18496025  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18496024 cacaatctagattactaatggatctctgcaagaccgaagtccacaaaactagatcactaaatgatctctgctaggccggagcccaatgatgcaacaaaaa 18495925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 88 - 314
Target Start/End: Complemental strand, 45460670 - 45460447
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    ||||||||||||||||||||| |||| |||||   |||||| |||| |||||||||||||||||||| |||| | ||||||||| |||||||| ||||||    
T  45460670 gatgtgcacctagttcgacacgtatatgcatgcggtaccatatcacctcaaggtcgtcacctatatccagactgtcaaaggtctctgcaaggccgaagcc 45460571  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  45460570 cacaatctagatcacta-tggatctctgcaagactgaagtccacaaaactagatcactcaatgatctctgctaggccggagcccaatgatgcaacaaaaa 45460472  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     |||||||   ||||||||||||||||    
T  45460471 catcatat--caatctcaacacgacta 45460447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 88 - 314
Target Start/End: Complemental strand, 30236206 - 30235982
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||||||||| || |||||||||| | ||||  |||||| |||| |||||||||||||||||||| |||||| ||||||||| | |||||| ||||||    
T  30236206 gatgtgcacctaatttgacacatatatggatgtggtaccatatcacctcaaggtcgtcacctatatccagaccgtcaaaggtctctacaaggccgaagcc 30236107  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    ||||||||||||||||| | |||||||||||||||||||||||||| ||||||||| | |||||||||| ||||||||||||||||||||||||||||||    
T  30236106 cacaatctagatcacta-tagatctctgcaagaccgaagtccacaaaactagatcagtcaatgatctctgctaggccggagcccaatgatgcaacaaaaa 30236008  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     |||||||  ||||||||||| |||||    
T  30236007 catcatat-caaatctcaacatgacta 30235982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 92 - 313
Target Start/End: Complemental strand, 52267180 - 52266961
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccaca 191  Q
    |||||||||||||||||||| | ||||||  |||||  |||||||||||||||||||||||||||||||  ||| ||||| |||||||| ||||||||||    
T  52267180 tgcacctagttcgacacatacatgcatgtggtaccaaatcacttcaaggtcgtcacctatatctagaccatcaa-ggtctctgcaaggccgaagcccaca 52267082  T
Q  192 atctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatc 291  Q
    |||||||||||||||||||||||||| |  | | | |||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||| |||    
T  52267081 atctagatcactaatggatctctgcagggtcaaggcccacaa-actagatcactaaatgatctctgcaaggccggagcccaatgatgcaacaaaaacatc 52266983  T
Q  292 atataaaaatctcaacacgact 313  Q
    ||||||||||| ||||||||||    
T  52266982 atataaaaatcccaacacgact 52266961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 92 - 314
Target Start/End: Original strand, 15043388 - 15043608
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccaca 191  Q
    |||||||||||||||||||||| ||||||  |||||  | || |||||||||||||||  ||||||||| |||||||||| | |||||| ||| ||||||    
T  15043388 tgcacctagttcgacacatatatgcatgtggtaccaaatgacctcaaggtcgtcaccttcatctagaccaccaaaggtctctacaaggccgaaacccaca 15043487  T
Q  192 atctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatc 291  Q
    |||||||||||||||||||||||||||| |||||| ||| || ||||||||||||||||||| || | |||||| ||||||||||||||||||||| |||    
T  15043488 atctagatcactaatggatctctgcaaggccgaagcccataa-actagatcactaaatgatccctgcaaggccgaagcccaatgatgcaacaaaaacatc 15043586  T
Q  292 atataaaaatctcaacacgacta 314  Q
    |||| ||||||||||||| ||||    
T  15043587 atat-aaaatctcaacacaacta 15043608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 92 - 314
Target Start/End: Complemental strand, 15111036 - 15110816
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccaca 191  Q
    |||||||||||||||||||||| ||||||  |||||  | || |||||||||||||||  ||||||||| |||||||||| | |||||| ||| ||||||    
T  15111036 tgcacctagttcgacacatatatgcatgtggtaccaaatgacctcaaggtcgtcaccttcatctagaccaccaaaggtctctacaaggccgaaacccaca 15110937  T
Q  192 atctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatc 291  Q
    |||||||||||||||||||||||||||| |||||| ||| || ||||||||||||||||||| || | |||||| ||||||||||||||||||||| |||    
T  15110936 atctagatcactaatggatctctgcaaggccgaagcccataa-actagatcactaaatgatccctgcaaggccgaagcccaatgatgcaacaaaaacatc 15110838  T
Q  292 atataaaaatctcaacacgacta 314  Q
    |||| ||||||||||||| ||||    
T  15110837 atat-aaaatctcaacactacta 15110816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 92 - 314
Target Start/End: Complemental strand, 43283098 - 43282878
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccaca 191  Q
    |||||||||||||||||||||| ||||||  |||||  ||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||| || |    
T  43283098 tgcacctagttcgacacatatatgcatgtggtaccaaatcacttcaaggtcgtcacctatatctagaccaccaaaggtctctgcaaggccgaagctcata 43282999  T
Q  192 atctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatc 291  Q
    ||||||||||||||||||| |||  | |    |   |||||| |||||||||||||||||||||| | |||||| ||||||||||||||||||||| |||    
T  43282998 atctagatcactaatggatttctttatggtttattcccacaa-actagatcactaaatgatctctgcaaggccgaagcccaatgatgcaacaaaaacatc 43282900  T
Q  292 atataaaaatctcaacacgacta 314  Q
    |||| ||||||||||||||||||    
T  43282899 atat-aaaatctcaacacgacta 43282878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 130 - 314
Target Start/End: Original strand, 44054410 - 44054590
Alignment:
Q  130 tcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatcactaatggatctctgcaagaccgaagtcc 229  Q
    |||| |||||| |||||||||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||    
T  44054410 tcacctcaaggccgtcacctatatctagaccgtcaaaggtctctgcaaggccgaagcccataatctagatcact-atggatctctgcaagaccgaagtcc 44054508  T
Q  230 acaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaatctcaacacgacta 314  Q
    | || ||||||||||  |||||||||| |||||||||||||||| ||||||||||||| ||| |||  |||||||| ||||||||    
T  44054509 agaa-actagatcac-caatgatctctgctaggccggagcccaaagatgcaacaaaaacatcttat-caaatctcagcacgacta 44054590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 102 - 273
Target Start/End: Original strand, 33738686 - 33738855
Alignment:
Q  102 tcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaagg-ctgaagcccacaatctagatc 200  Q
    |||||||||||| ||||||  |||||  |||| | |||||||||||  ||||| ||||| |||| ||||| ||||||| |||||||||| ||||||||||    
T  33738686 tcgacacatatatgcatgtggtaccaaatcaccttaaggtcgtcactcatatccagaccaccaagggtctctgcaaggcctgaagcccaaaatctagatc 33738785  T
Q  201 actaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaa 273  Q
    ||||| ||||||||||||||| ||||||||||| |||||||||| ||||||||||| | ||||||||||||||    
T  33738786 actaa-ggatctctgcaagactgaagtccacaa-actagatcac-aaatgatctctgcaaggccggagcccaa 33738855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 178
Target Start/End: Complemental strand, 16395761 - 16395671
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaag 178  Q
    |||||| ||||||  ||||||||||| ||||||  |||||||||||||||||||||||||||||||||| |||| ||||||| | ||||||    
T  16395761 gatgtgtacctagaccgacacatatatgcatgtggtaccatttcacttcaaggtcgtcacctatatctaaaccgtcaaaggtttctgcaag 16395671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 314
Target Start/End: Complemental strand, 13751850 - 13751784
Alignment:
Q  247 aatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaatctcaacacgacta 314  Q
    |||||||||| |||||||||||||||||||| ||||||||| ||||||| || || ||||||||||||    
T  13751850 aatgatctctgctaggccggagcccaatgatccaacaaaaacatcatat-aacatatcaacacgacta 13751784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 314
Target Start/End: Original strand, 44345290 - 44345495
Alignment:
Q  104 gacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatcact 203  Q
    |||||||||| ||||||  || ||  |||| |||||||||||||||  ||| ||||| |||| ||||| |||||| | |||| |||||| ||||||| |     
T  44345290 gacacatatatgcatgtggtaacaaatcacctcaaggtcgtcacctgaatccagaccaccaagggtctctgcaagaccgaagtccacaa-ctagatctc- 44345387  T
Q  204 aatggatctctgcaagaccgaagtcc-acaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaatc 302  Q
    ||  |||||||||||| | |||| || | || |||||||| | ||| ||||||| ||||||||||||||||| |||  |  |||| ||||||| ||||||    
T  44345388 aaaagatctctgcaaggctgaagcccaaaaaaactagatctc-aaaagatctctgctaggccggagcccaataatg--aataaaacatcatat-aaaatc 44345483  T
Q  303 tcaacacgacta 314  Q
    ||||||||||||    
T  44345484 tcaacacgacta 44345495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 271
Target Start/End: Original strand, 33738798 - 33738893
Alignment:
Q  173 tgcaaggctgaagcccacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagccc 271  Q
    |||||| |||||| |||||| ||||||||| |||| ||||||||||| ||| || ||| || |||||||||| ||||||||||  ||||||||||||||    
T  33738798 tgcaagactgaagtccacaaactagatcacaaatg-atctctgcaaggccggagcccaaaa-actagatcac-aaatgatctcggctaggccggagccc 33738893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 14899990 - 14900047
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacct 149  Q
    ||||| |||||||||||||||| |||||| ||||||  |||| |||||||||||||||    
T  14899990 tgcacgtagttcgacacatatatgcatgtgataccaaatcacctcaaggtcgtcacct 14900047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 41258007 - 41257951
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacc 148  Q
    |||||||||| ||||||||||| ||||||  |||||  |||| ||||||||||||||    
T  41258007 tgcacctagtccgacacatatatgcatgtggtaccaaatcacctcaaggtcgtcacc 41257951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 22866618 - 22866842
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||||||||||  ||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||    
T  22866618 gatgtgcacctagcccgacacatatatgcatgtgatactatttcacttcaaggtcgtcacctatatctagaccgtcaaaggtctctgcaaggccgaagcc 22866717  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||| ||||||||    
T  22866718 cacaatctagatcactaatggatctctgcaagaccgaagtccacaaaactagatcactaaatgatctctgctaggccgaagcccaatgatgtaacaaaaa 22866817  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     |||||||   ||||||||||||||||    
T  22866818 catcatat--caatctcaacacgacta 22866842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 88 - 314
Target Start/End: Complemental strand, 28196498 - 28196273
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    ||||||||||||||||||||| |||| ||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| || |||    
T  28196498 gatgtgcacctagttcgacacttatatgcatgtggtaccatttcacttcaaggtcgtcacctatatctagaccgccaagggtctctacaaggccgacgcc 28196399  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
     ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||| ||| |||||||||||||||    
T  28196398 tacaatctagatcactaatggatctctgcaagaccgaagtccacaaaactagatcactaaatgatctctgctaggctggaacccgatgatgcaacaaaaa 28196299  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     ||||||| ||||||||||||||||||    
T  28196298 catcatat-aaaatctcaacacgacta 28196273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 88 - 314
Target Start/End: Complemental strand, 25369073 - 25368850
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    ||||||||||||||||||| |||||| ||||||  |||||||||||||||||||||||||||||||||||||| || ||||||| |||||||| ||||||    
T  25369073 gatgtgcacctagttcgacgcatatatgcatgtggtaccatttcacttcaaggtcgtcacctatatctagaccacc-aaggtctctgcaaggccgaagcc 25368975  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    |||||||||||||||||||||||||||||| |  | ||| |||||| |||||||||||||||||||||| | |||||  | |||||||||||||||||||    
T  25368974 cacaatctagatcactaatggatctctgcagggtctaagcccacaa-actagatcactaaatgatctctgcaaggcctaaccccaatgatgcaacaaaaa 25368876  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     ||||||| ||||||||||||||||||    
T  25368875 catcatat-aaaatctcaacacgacta 25368850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 110 - 314
Target Start/End: Original strand, 18397397 - 18397600
Alignment:
Q  110 tataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaa-tctagatcactaatgg 208  Q
    |||| ||||||  |||||| |||| ||||||||||||||||||||||||||  |||||| || |||||||| |||| |||||| ||||||||||||| ||    
T  18397397 tatatgcatgtggtaccatatcacctcaaggtcgtcacctatatctagaccatcaaaggcctctgcaaggccgaaggccacaaatctagatcactaa-gg 18397495  T
Q  209 atctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaatctcaaca 308  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||  |||||||||||    
T  18397496 atctctgcaagaccgaagtccacaaaactagatcactaaatgatctctgctaggccgaagcccaatgatgcaacaaaaacatcatat-caaatctcaaca 18397594  T
Q  309 cgacta 314  Q
    ||||||    
T  18397595 cgacta 18397600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 92 - 311
Target Start/End: Original strand, 15738702 - 15738919
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccaca 191  Q
    |||||||||||||||||||| | ||||||  |||||  ||||||||| ||||||||||||||||||||| |||||||||  |||||||| |||||| |||    
T  15738702 tgcacctagttcgacacatacatgcatgtggtaccaaatcacttcaacgtcgtcacctatatctagaccaccaaaggtccctgcaaggccgaagcc-aca 15738800  T
Q  192 atctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatc 291  Q
    |||||||||||||||||||||||||| | |  ||| |||||| |||||||||||||||||| ||| | |||||| ||||||||||||||||||||| |||    
T  15738801 atctagatcactaatggatctctgcagggctaaagcccacaa-actagatcactaaatgatatctgcaaggccgaagcccaatgatgcaacaaaaacatc 15738899  T
Q  292 atataaaaatctcaacacga 311  Q
    ||||||||||| ||||||||    
T  15738900 atataaaaatcccaacacga 15738919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 173 - 314
Target Start/End: Original strand, 32897260 - 32897397
Alignment:
Q  173 tgcaaggctgaagcccacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagccca 272  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| || |||||||| |||||||||||||||    
T  32897260 tgcaaggccgaagcccacaatctagatcacta-tggatctctgcaagaccgaagtccacaa-actagatcaccaa-tgatctctgctaggccggagccca 32897356  T
Q  273 atgatgcaacaaaaatatcatataaaaatctcaacacgacta 314  Q
    | ||||||||||||| ||| |||  |||||||||||| ||||    
T  32897357 aagatgcaacaaaaacatcttat-caaatctcaacacaacta 32897397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 103 - 233
Target Start/End: Complemental strand, 13016480 - 13016350
Alignment:
Q  103 cgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccac-aatctagatca 201  Q
    ||||||| ||| ||||||  |||||| |||  |||||||||||||||| |||||||||| ||||||||| |||||||| ||||||||| |||||||||||    
T  13016480 cgacacaaatatgcatgtggtaccatatcatctcaaggtcgtcacctaaatctagaccgtcaaaggtctctgcaaggccgaagcccacaaatctagatca 13016381  T
Q  202 ctaatggatctctgcaagaccgaagtccacaa 233  Q
    |||| |||||||||||||||||||||||||||    
T  13016380 ctaa-ggatctctgcaagaccgaagtccacaa 13016350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 102 - 273
Target Start/End: Original strand, 18422258 - 18422427
Alignment:
Q  102 tcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaagg-ctgaagcccacaatctagatc 200  Q
    |||||||||||| ||||||  |||||  |||| |||||||||||||| ||||| ||||| |||| ||||| ||||||| |||||||||| |||||| |||    
T  18422258 tcgacacatatatgcatgtggtaccaaatcacctcaaggtcgtcacccatatccagaccaccaagggtctctgcaaggcctgaagcccaaaatctatatc 18422357  T
Q  201 actaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaa 273  Q
    ||||| ||||||||| ||||| ||||||| ||| ||||||| || ||||||||||| | ||||||||||||||    
T  18422358 actaa-ggatctctgtaagactgaagtccgcaa-actagataac-aaatgatctctacaaggccggagcccaa 18422427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 7828891 - 7828828
Alignment:
Q  199 tcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctagg 262  Q
    ||||||| |||||||||||||||||||||||| || ||||||||||||||| |||||| |||||    
T  7828891 tcactaacggatctctgcaagaccgaagtccataaaactagatcactaaataatctctgctagg 7828828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 242
Target Start/End: Complemental strand, 25646561 - 25646425
Alignment:
Q  104 gacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatcact 203  Q
    |||||||||| ||||||  |||||  || | |||||||||||||| ||||| ||||| |||| ||||| | |||| | |||| |||||| ||||||| |     
T  25646561 gacacatatatgcatgtggtaccaaatctcctcaaggtcgtcacccatatccagaccaccaagggtctctacaagaccgaagtccacaaactagatctc- 25646463  T
Q  204 aatggatctctgcaagaccgaagtccacaatactagatc 242  Q
    ||  |||||||||||||||||||||||||| ||||||||    
T  25646462 aaaagatctctgcaagaccgaagtccacaa-actagatc 25646425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 22846639 - 22846696
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacct 149  Q
    |||||||||||||||||||||| ||||||| |||||  ||||  ||||||||||||||    
T  22846639 tgcacctagttcgacacatatatgcatgtagtaccaaatcaccgcaaggtcgtcacct 22846696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 314
Target Start/End: Complemental strand, 25646418 - 25646317
Alignment:
Q  208 gatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaatctcaac 307  Q
    |||||||| ||||||||||||||||| | |||||| | ||| ||||| | ||||||||||||||||| |||  |  |||| ||||||| |||||||||||    
T  25646418 gatctctgtaagaccgaagtccacaa-attagatctc-aaaagatctatgctaggccggagcccaataatg--aataaaacatcatat-aaaatctcaac 25646324  T
Q  308 acgacta 314  Q
    |||||||    
T  25646323 acgacta 25646317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 15629216 - 15629441
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||||||||||||||||||||||| ||||||  |||||||||| |||| ||||||||||||||||||||||||||||||||| | |||||| ||||||    
T  15629216 gatgtgcacctagttcgacacatatatgcatgtggtaccatttcaattcatggtcgtcacctatatctagaccgccaaaggtctctacaaggccgaagcc 15629315  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| |||| |||||||||||||||||||||    
T  15629316 cacaatctagatcactaatggaactctgcaagaccgaagtccacaaaactagatcactaaatgatctctgctacgccgaagcccaatgatgcaacaaaaa 15629415  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     ||||||| ||||||||||| ||||||    
T  15629416 catcatat-aaaatctcaacgcgacta 15629441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 90 - 309
Target Start/End: Complemental strand, 16571808 - 16571591
Alignment:
Q  90 tgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagccca 189  Q
    |||||||||||||||||||||||| ||||||  |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||    
T  16571808 tgtgcacctagttcgacacatatatgcatgtggtaccatttcacttcaaggtcatcacctatatctagaccgtcaaaggtctttgcaaggccgaagccca 16571709  T
Q  190 caatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaata 289  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||  ||||||||||||||||||||||||||||| |    
T  16571708 caatctagatcactaatggatctctacaagaccgaagtccacaa-actaaatcactaaatgatctctgttaggccggagcccaatgatgcaacaaaaaca 16571610  T
Q  290 tcatataaaaatctcaacac 309  Q
    ||||||  ||||||||||||    
T  16571609 tcatat-caaatctcaacac 16571591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 90 - 309
Target Start/End: Original strand, 16593854 - 16594071
Alignment:
Q  90 tgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagccca 189  Q
    |||||||||||||||||||||||| ||||||  |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||    
T  16593854 tgtgcacctagttcgacacatatatgcatgtggtaccatttcacttcaaggtcatcacctatatctagaccgtcaaaggtctttgcaaggccgaagccca 16593953  T
Q  190 caatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaata 289  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||  ||||||||||||||||||||||||||||| |    
T  16593954 caatctagatcactaatggatctctacaagaccgaagtccacaa-actaaatcactaaatgatctctgttaggccggagcccaatgatgcaacaaaaaca 16594052  T
Q  290 tcatataaaaatctcaacac 309  Q
    ||||||  ||||||||||||    
T  16594053 tcatat-caaatctcaacac 16594071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 88 - 314
Target Start/End: Complemental strand, 49049511 - 49049295
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  49049511 gatgtgcacctagttcgacacatatatgcatgtggtaccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctctgcaaggccgaagcc 49049412  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||         |||| |||||||| | |||||||||||||||||||    
T  49049411 cacaatctagatcactaatggatctctgcaagaccgaagtccacaaaactagatca---------ctctgctaggccgaaacccaatgatgcaacaaaaa 49049321  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     ||||||| ||||||||||||||||||    
T  49049320 catcatat-aaaatctcaacacgacta 49049295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 13273188 - 13273413
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||| ||||||||||||  |||||||||| |||||||| || |||    
T  13273188 gatgtgcacctagttcgacacatatatgcatgtggtaccatttcacttcaaggtcgtcatctatatctagactaccaaaggtctctgcaaggccgaggcc 13273287  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| |||  |||||||||||||||||||||    
T  13273288 cacaatctagatcactaatggatctctgcaagactgaagtccacaaaactagatcactaaatgatctctgctatgccaaagcccaatgatgcaacaaaaa 13273387  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     || |||| || || ||||||||||||    
T  13273388 cattatat-aatatttcaacacgacta 13273413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 92 - 314
Target Start/End: Complemental strand, 10862570 - 10862350
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccaca 191  Q
    |||||||||||||||||||||| ||||| | || ||  ||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||    
T  10862570 tgcacctagttcgacacatatatgcatgcagtagcaaatcacttcaaggtcgtcacctatatctagaccaccaaaggtctctgcaaggccgaagcccaca 10862471  T
Q  192 atctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatc 291  Q
    |||||||||||||||||||||||| ||| |||||| |||||| ||||||||||||| |||||||| | |||||| ||||||||||||||||||| | |||    
T  10862470 atctagatcactaatggatctctgtaaggccgaagcccacaa-actagatcactaagtgatctctgcaaggccgaagcccaatgatgcaacaaacacatc 10862372  T
Q  292 atataaaaatctcaacacgacta 314  Q
    |||| ||||||||||||||||||    
T  10862371 atat-aaaatctcaacacgacta 10862350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 88 - 314
Target Start/End: Complemental strand, 12249830 - 12249606
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||||||||||||||||||||||| ||||||  |||||| ||||||||| ||||||||| |||||||||||   ||||| || || ||  | ||||||    
T  12249830 gatgtgcacctagttcgacacatatatgcatgtggtaccatatcacttcaaagtcgtcaccaatatctagaccaaaaaaggactctgaaaaaccgaagcc 12249731  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  12249730 cacaatctagatcactaatggatctctgcaagaccgaagtccacaa-actagatcactaaatgatccctgctaggccggagcccaatgatgcaacaaaaa 12249632  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     ||||||| |||||||||||| |||||    
T  12249631 catcatat-aaaatctcaacatgacta 12249606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 135 - 299
Target Start/End: Original strand, 11285703 - 11285868
Alignment:
Q  135 tcaaggtcgtcacctatatctagaccgccaaagg-tctttgcaaggctgaagcccacaatctagatcactaatggatctctgcaagaccgaagtccacaa 233  Q
    |||||||||||||||||  | ||||| |||| || ||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11285703 tcaaggtcgtcacctatccccagaccaccaaggggtctctgcaaggctaaagcccacaaactagatcactaatggatctctgcaagaccgaagtccacaa 11285802  T
Q  234 tactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaa 299  Q
     |||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  11285803 aactagatcaccaaatgatctctgctaggccggagcccaatgatgcaacaaaaacatcatataaaa 11285868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 102 - 270
Target Start/End: Complemental strand, 15824149 - 15823984
Alignment:
Q  102 tcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatca 201  Q
    |||||||||||| ||||||  |||||  |||| |||||||||||| | |||||  ||||||||| ||||| |||||||| ||||||||||||||||||||    
T  15824149 tcgacacatatatgcatgtggtaccaaatcacctcaaggtcgtcatccatatcctgaccgccaagggtctctgcaaggccgaagcccacaatctagatca 15824050  T
Q  202 ctaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcc 270  Q
    |||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| | |||||| ||||    
T  15824049 ctaa-ggatctctgcaagaccgaagtccacaa-actagatcac-aaatgatctctgcaaggccgaagcc 15823984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 102 - 273
Target Start/End: Original strand, 44863666 - 44863835
Alignment:
Q  102 tcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaagg-ctgaagcccacaatctagatc 200  Q
    |||||||||||| ||||||  |||||  |||| |||||||||||||| ||||| ||||| |||| ||||| ||||||| |||||||||| ||||||||||    
T  44863666 tcgacacatatatgcatgtggtaccaaatcacctcaaggtcgtcacccatatccagaccaccaagggtctctgcaaggcctgaagcccaaaatctagatc 44863765  T
Q  201 actaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaa 273  Q
    ||||| ||||||||||||||||||||||||||| |||||||||| |||| |||||| | ||||||||||||||    
T  44863766 actaa-ggatctctgcaagaccgaagtccacaa-actagatcac-aaattatctctgcaaggccggagcccaa 44863835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 105 - 274
Target Start/End: Original strand, 142094 - 142261
Alignment:
Q  105 acacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaagg-ctgaagcccacaatctagatcact 203  Q
    ||||||||| ||||||  |||||  |||| |||||||||||||| ||||| ||||| |||| ||||| ||||||| || ||||||| |||||||||||||    
T  142094 acacatatatgcatgtggtaccaaatcacctcaaggtcgtcacccatatccagaccaccaagggtctctgcaaggtctaaagcccaaaatctagatcact 142193  T
Q  204 aatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaat 274  Q
    || ||||||||||||||||||||||||||| |||||||||| ||||||||||| | |||||||||||||||    
T  142194 aa-ggatctctgcaagaccgaagtccacaa-actagatcac-aaatgatctctgcaaggccggagcccaat 142261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 102 - 273
Target Start/End: Original strand, 47288199 - 47288368
Alignment:
Q  102 tcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggc-tgaagcccacaatctagatc 200  Q
    |||||||||||| ||||||  |||||  |||   |||||| |||||| ||||| ||||| |||| ||||| |||||||| ||||||||| ||||||||||    
T  47288199 tcgacacatatatgcatgtggtaccaaatcatcccaaggttgtcacccatatccagaccaccaagggtctctgcaaggcctgaagcccaaaatctagatc 47288298  T
Q  201 actaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaa 273  Q
    ||||| |||||| |||||||||||||||||||| |||||||||| ||||||||||| | |||||| |||||||    
T  47288299 actaa-ggatctttgcaagaccgaagtccacaa-actagatcac-aaatgatctctgcaaggccgaagcccaa 47288368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 173 - 314
Target Start/End: Complemental strand, 15824038 - 15823903
Alignment:
Q  173 tgcaaggctgaagcccacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagccca 272  Q
    |||||| | |||| |||||| ||||||||| |||| ||||||||||| |||||| ||| || |||||||||| ||||||||||| |||||||||||||||    
T  15824038 tgcaagaccgaagtccacaaactagatcacaaatg-atctctgcaaggccgaag-ccaaaaaactagatcac-aaatgatctctgctaggccggagccca 15823942  T
Q  273 atgatgcaacaaaaatatcatataaaaatctcaacacgacta 314  Q
    || |||  |  |||| ||||||| ||||||||||||||||||    
T  15823941 ataatg--aataaaacatcatat-aaaatctcaacacgacta 15823903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 314
Target Start/End: Original strand, 47288307 - 47288446
Alignment:
Q  169 tctttgcaaggctgaagcccacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggag 268  Q
    |||||||||| | |||| |||||| ||||||||| |||| ||||||||||| |||||| ||| || |||||||||| |||| |||||| |||||||||||    
T  47288307 tctttgcaagaccgaagtccacaaactagatcacaaatg-atctctgcaaggccgaagcccaaaa-actagatcac-aaattatctctgctaggccggag 47288403  T
Q  269 cccaatgatgcaacaaaaatatcatataaaaatctcaacacgacta 314  Q
    |||||| |||  |  |||| ||||||| ||| ||||||||||||||    
T  47288404 cccaataatg--aataaaacatcatat-aaactctcaacacgacta 47288446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 173 - 274
Target Start/End: Complemental strand, 18305430 - 18305332
Alignment:
Q  173 tgcaaggctgaagcccacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagccca 272  Q
    |||||||| |||||||| || ||| ||||| |||| ||||||||||||||||||||||||| |||||||| | ||| ||||||| | |||||||||||||    
T  18305430 tgcaaggccgaagcccaaaaactaaatcacaaatg-atctctgcaagaccgaagtccacaa-actagatctc-aaaagatctctgcaaggccggagccca 18305334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 9058287 - 9058230
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacct 149  Q
    |||||||||||||||||||||| ||||||  |||||  |||| |||||||||||||||    
T  9058287 tgcacctagttcgacacatatatgcatgtggtaccaaatcacctcaaggtcgtcacct 9058230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 273
Target Start/End: Complemental strand, 12545421 - 12545283
Alignment:
Q  130 tcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatcactaatggatctctgcaagaccgaagtcc 229  Q
    |||| |||||||||||||||  ||| ||||| |||| ||||| |||||| | |||| |||||| ||||||  ||||  |||||||||||| |||||  ||    
T  12545421 tcacctcaaggtcgtcacctgaatccagaccaccaagggtctctgcaagacagaagtccacaaactagat--ctaaaagatctctgcaaggccgaaaccc 12545324  T
Q  230 acaatactagatcactaaatgatctcttctaggccggagcccaa 273  Q
    | || ||||||||||  |||||||||| | |||||| |||||||    
T  12545323 a-aaaactagatcac--aatgatctctgcaaggccgaagcccaa 12545283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 314
Target Start/End: Complemental strand, 13867660 - 13867567
Alignment:
Q  216 caagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaatctcaacacgacta 314  Q
    |||||||||||||||||| |||||||| | ||| ||||||| | ||||||||||||||| ||| |   |||| ||||||||||| ||||||||||||||    
T  13867660 caagaccgaagtccacaa-actagatctcaaaa-gatctctgcaaggccggagcccaataatgaat--aaaacatcatataaaa-tctcaacacgacta 13867567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 13867733 - 13867635
Alignment:
Q  102 tcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatc 200  Q
    |||||||||||| ||||||  |||||  || | |||||||||||||| ||||| ||| | |||| ||||||| |||| | |||| |||||| |||||||    
T  13867733 tcgacacatatatgcatgtggtaccaaatctcctcaaggtcgtcacccatatccagatcaccaagggtctttacaagaccgaagtccacaaactagatc 13867635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 314
Target Start/End: Original strand, 44863778 - 44863914
Alignment:
Q  173 tgcaaggctgaagcccacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagccca 272  Q
    |||||| | |||| |||||| ||||||||| |||  ||||||||||| ||| || ||| ||  ||||||||| ||||||||| | |||| ||||||||||    
T  44863778 tgcaagaccgaagtccacaaactagatcacaaatt-atctctgcaaggccggagcccaaaaacctagatcac-aaatgatctatgctagaccggagccca 44863875  T
Q  273 atgatgcaacaaaaatatcatataaaaatctcaacacgacta 314  Q
    || ||| |   |||| ||||||||||| ||||||||||||||    
T  44863876 ataatgaat--aaaacatcatataaaa-tctcaacacgacta 44863914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 88 - 314
Target Start/End: Complemental strand, 51658045 - 51657820
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||||||||||||||||||||||| ||||||  |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  51658045 gatgtgcacctagttcgacacatatatgcatgtggtaccatttcactccaaggtcgtcacctatatctagaccgccaaaggtctctgcaaggccgaagcc 51657946  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
     ||||||||||||||||| |||||||||||||| ||||||| |||| |||||||||||||||||||||| |||||||| |||||||||||| ||||||||    
T  51657945 tacaatctagatcactaacggatctctgcaagatcgaagtctacaaaactagatcactaaatgatctctgctaggccgaagcccaatgatgtaacaaaaa 51657846  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     ||||||| ||||||||||||||||||    
T  51657845 catcatat-aaaatctcaacacgacta 51657820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 88 - 314
Target Start/End: Complemental strand, 35524141 - 35523916
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||||||||||| ||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | ||||    
T  35524141 gatgtgcacctagtccgacacatatatgcatgtggtaccatttcacttcaaggtcgtcacctatatctagaccgtcaaaggtctctgcaaggccggagcc 35524042  T
Q  188 cac-aatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaa 286  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  35524041 cacaaatctagatcactaa-ggatctctgcaagaccgaagtccaccaaactagatcactaaatgatctctgctaggccggagcccaaagatgcaacaaaa 35523943  T
Q  287 atatcatataaaaatctcaacacgacta 314  Q
    | ||| |||  |||||||||| ||||||    
T  35523942 acatcttat-caaatctcaactcgacta 35523916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 92 - 314
Target Start/End: Original strand, 27673300 - 27673520
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccaca 191  Q
    ||||||||||| |||||||||| ||||||  |||||  ||||||||||| ||||||||||||||||||| |||||||||| |||||||| ||||||||||    
T  27673300 tgcacctagtttgacacatatatgcatgtggtaccaactcacttcaagggcgtcacctatatctagaccaccaaaggtctctgcaaggccgaagcccaca 27673399  T
Q  192 atctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatc 291  Q
    ||||||||||||||||||||||||||||  | ||| |||||| |||||||||||||||||||||| | |||||| ||||||||||||||||||||| |||    
T  27673400 atctagatcactaatggatctctgcaaggacaaagcccacaa-actagatcactaaatgatctctgcaaggccgaagcccaatgatgcaacaaaaacatc 27673498  T
Q  292 atataaaaatctcaacacgacta 314  Q
    |||| ||||||||||||||||||    
T  27673499 atat-aaaatctcaacacgacta 27673520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 92 - 299
Target Start/End: Complemental strand, 20956682 - 20956476
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccaca 191  Q
    |||||||||||||||||||||| ||||||  |||||  ||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||| |    
T  20956682 tgcacctagttcgacacatatatgcatgtggtaccaaatcacttcaaggtcgtcacctatatctagaccaccaaaggtctctgcaaggccgaagcccata 20956583  T
Q  192 atctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatc 291  Q
    ||||||||||| |||||||||||||||| | |||| |||||| |||||||||||||||||||||| | |||||| ||||||||||||||||||||| |||    
T  20956582 atctagatcaccaatggatctctgcaaggctgaagcccacaa-actagatcactaaatgatctctgcaaggccgaagcccaatgatgcaacaaaaacatc 20956484  T
Q  292 atataaaa 299  Q
    ||||||||    
T  20956483 atataaaa 20956476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 92 - 314
Target Start/End: Complemental strand, 22836966 - 22836746
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccaca 191  Q
    |||||||||||||||||||||| ||||||  |||||  ||||||||||||||||||||||||||||| | |||||||||| |||||||| ||||||||||    
T  22836966 tgcacctagttcgacacatatatgcatgtggtaccaaatcacttcaaggtcgtcacctatatctagaacaccaaaggtctctgcaaggccgaagcccaca 22836867  T
Q  192 atctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatc 291  Q
    ||||||||||||||||||| |||||| |  ||| | |||||| |||||||||||||||||||||| | |||||| ||||||||||||||||||||| |||    
T  22836866 atctagatcactaatggatttctgcatggtcgatgcccacaa-actagatcactaaatgatctctgcaaggccgaagcccaatgatgcaacaaaaacatc 22836768  T
Q  292 atataaaaatctcaacacgacta 314  Q
    |||| ||||||||||||||||||    
T  22836767 atat-aaaatctcaacacgacta 22836746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 21716648 - 21716873
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||| ||||||  ||||||||||| ||||||  |||||| | |  ||||||||||||||||||||||||||| ||||||||| ||||||||   ||||    
T  21716648 gatgtgtacctagaccgacacatatatgcatgtggtaccatattatctcaaggtcgtcacctatatctagaccgtcaaaggtctctgcaaggccagagcc 21716747  T
Q  188 cacaa-tctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaa 286  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||   || ||||||||||||||||| |||||||||||||||| ||||||||||||    
T  21716748 cacaaatctagatcactaa-ggatctctgcaagaccgaagtccacaaatttaaatcactaaatgatctctgctaggccggagcccaaagatgcaacaaaa 21716846  T
Q  287 atatcatataaaaatctcaacacgacta 314  Q
    | ||| |||  |||||||||| ||||||    
T  21716847 acatcttat-caaatctcaactcgacta 21716873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 102 - 314
Target Start/End: Original strand, 49966106 - 49966316
Alignment:
Q  102 tcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaagg----tctttgcaaggctgaagcccacaatctag 197  Q
    |||||||||||| ||||||  |||||  |||| |||||||||||||| ||||| ||||| |||| ||    ||| ||||||||||||||||| |||||||    
T  49966106 tcgacacatatatgcatgtggtaccaaatcacctcaaggtcgtcacccatatccagaccaccaagggtctctctctgcaaggctgaagcccataatctag 49966205  T
Q  198 atcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataa 297  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||| | ||||||||||||||| |||  |  |||| ||||||| |    
T  49966206 atcact-atggatctctgcaagaccgaagtccacaa-actagatcact-aatgatctctgccaggccggagcccaataatg--aataaaacatcatat-a 49966299  T
Q  298 aaatctcaacacgacta 314  Q
    |||||||||||| ||||    
T  49966300 aaatctcaacactacta 49966316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 182 - 314
Target Start/End: Complemental strand, 22407819 - 22407691
Alignment:
Q  182 gaagcccacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaa 281  Q
    |||| |||||| ||| |||||||| |||||||| |||||||||||||||||| |||||||||| || |||||||| |||||||||||| |||||||||||    
T  22407819 gaagtccacaaactatatcactaa-ggatctctacaagaccgaagtccacaa-actagatcaccaa-tgatctctgctaggccggagctcaatgatgcaa 22407723  T
Q  282 caaaaatatcatataaaaatctcaacacgacta 314  Q
    |||||| ||||||| ||||||||||||||||||    
T  22407722 caaaaacatcatat-aaaatctcaacacgacta 22407691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 102 - 247
Target Start/End: Complemental strand, 22407939 - 22407796
Alignment:
Q  102 tcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatca 201  Q
    |||||||||||| ||||||  |||||  |||| |||||||||||||| ||||| ||||| |||  ||||| | |||||| ||||||||||||||||||||    
T  22407939 tcgacacatatatgcatgtggtaccaaatcacctcaaggtcgtcacccatatccagaccaccatgggtctctacaaggccgaagcccacaatctagatca 22407840  T
Q  202 ctaatggatctctgcaagaccgaagtccacaatactagatcactaa 247  Q
    || |||||||||| |||||||||||||||||| |||| ||||||||    
T  22407839 ct-atggatctctacaagaccgaagtccacaa-actatatcactaa 22407796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 153; Significance: 4e-81; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 92 - 314
Target Start/End: Complemental strand, 17731172 - 17730954
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccaca 191  Q
    |||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||   ||||||  |||||| || |||||||| ||||||||||    
T  17731172 tgcacctagttcgacacatatatgcatgtggtaccatttcacttcaaggtcgtcacctat---tagaccttcaaaggcctctgcaaggccgaagcccaca 17731076  T
Q  192 atctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatc 291  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||    
T  17731075 atctagatcactaatggatctctgcaagaccgaagtccacaaaactagatcactaaatgatctctgctaggccggagcccaatgaagcaacaaaaacatc 17730976  T
Q  292 atataaaaatctcaacacgacta 314  Q
    |||| ||||||||||||||||||    
T  17730975 atat-aaaatctcaacacgacta 17730954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 94 - 314
Target Start/End: Original strand, 38532099 - 38532318
Alignment:
Q  94 cacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaat 193  Q
    |||||||||||||||||||| |||||   |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||    
T  38532099 cacctagttcgacacatatatgcatggggtaccatatcacttcaaggtcgtcacctatatctagaccaccaaaggtctttgcaaggccgaagcccaaaat 38532198  T
Q  194 ctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcat 293  Q
    || |||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||  ||||||| ||||||||||||||||||||| |||||    
T  38532199 ctggatcactaatggatctctgcaagatcgaagtccaccaaactagatcactaaatgatctctggtaggccgaagcccaatgatgcaacaaaaacatcat 38532298  T
Q  294 ataaaaatctcaacacgacta 314  Q
    || ||||||||||||||||||    
T  38532299 at-aaaatctcaacacgacta 38532318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 88 - 310
Target Start/End: Original strand, 21679647 - 21679867
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    ||||| |||||||  ||||||||||| ||||||  ||||||||||||||||||||||||||||| ||||||||| ||| | ||| |||||||| ||||||    
T  21679647 gatgttcacctagcccgacacatatatgcatgtggtaccatttcacttcaaggtcgtcacctatctctagaccgtcaaggatctctgcaaggccgaagcc 21679746  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||| ||||||||||||||||||||||||||||||    
T  21679747 cacaatctagatcactaatggatctctgcaagaccgaagtccacaaaactagatcac-caatgatctctactaggccggagcccaatgatgcaacaaaaa 21679845  T
Q  288 tatcatataaaaatctcaacacg 310  Q
     ||||||| ||||||||||||||    
T  21679846 catcatat-aaaatctcaacacg 21679867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 28543381 - 28543606
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||| ||||||  ||||||||||| ||||||  |||||| |||| ||||||||||||||||||||||||||| ||||||||| |||||||| ||||||    
T  28543381 gatgtgtacctagaccgacacatatatgcatgtggtaccatatcacctcaaggtcgtcacctatatctagaccgtcaaaggtctctgcaaggccgaagcc 28543480  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||| |||||| |||||| |||||||||||||||||||||||    
T  28543481 cacaatctagatcactaatggatctctgcaagaccgaagtccacaaaactagatcaacaaattatctctgctaggctggagcccaatgatgcaacaaaaa 28543580  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     |||||||  ||||||| |||||||||    
T  28543581 catcatat-caaatctcgacacgacta 28543606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 92 - 314
Target Start/End: Complemental strand, 18768477 - 18768256
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccaca 191  Q
    |||||| ||||||||||||| | |||| |  |||||||||||||||| |||||||||||||||||||||  ||||||||| | |||||| ||||||||||    
T  18768477 tgcaccaagttcgacacatacatgcatatggtaccatttcacttcaaagtcgtcacctatatctagaccaacaaaggtctctacaaggccgaagcccaca 18768378  T
Q  192 atctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatc 291  Q
    ||||||||||||| |||||||||||| |  | ||| |||||| |||||||||||||||||| ||| | |||||| ||| |||||||| |||||||| |||    
T  18768377 atctagatcactattggatctctgcagggtcaaagcccacaa-actagatcactaaatgatatctgcaaggccgaagctcaatgatgaaacaaaaacatc 18768279  T
Q  292 atataaaaatctcaacacgacta 314  Q
    ||||||||||| |||||||||||    
T  18768278 atataaaaatcccaacacgacta 18768256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 144 - 314
Target Start/End: Complemental strand, 20655682 - 20655513
Alignment:
Q  144 tcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaa-tctagatcactaatggatctctgcaagaccgaagtccacaatactagatc 242  Q
    |||||||||||||||||  ||||||||| |||||||| | ||||||||| ||||||||||||| |||||||||||||||||||||||| || ||||||||    
T  20655682 tcacctatatctagaccatcaaaggtctctgcaaggccggagcccacaaatctagatcactaa-ggatctctgcaagaccgaagtccataaaactagatc 20655584  T
Q  243 actaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaatctcaacacgacta 314  Q
    |||||||||||||  ||||||||||| |||||||||||||||||  ||| |||  |||||||||||||||||    
T  20655583 actaaatgatctcagctaggccggaggccaatgatgcaacaaaaccatcttat-caaatctcaacacgacta 20655513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 95 - 314
Target Start/End: Complemental strand, 22737587 - 22737372
Alignment:
Q  95 acctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatc 194  Q
    ||||||||||||||||||| ||||||  | |||||||  |||||||||||||||||||||||||||    ||||||| |||||||| |||||||||||||    
T  22737587 acctagttcgacacatatatgcatgtggtgccatttcttttcaaggtcgtcacctatatctagacc-attaaggtctctgcaaggccgaagcccacaatc 22737489  T
Q  195 tagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcata 294  Q
    ||||||||||||||||||||| | |  | | | ||| || |||||||||||||||||| ||| | |||||| |||||||||||||||| |||| ||||||    
T  22737488 tagatcactaatggatctctgtagggtcaaggcccataa-actagatcactaaatgatatctgcaaggccgaagcccaatgatgcaac-aaaacatcata 22737391  T
Q  295 taaaaatctcaacacgacta 314  Q
     ||||||||||||| |||||    
T  22737390 -aaaaatctcaacatgacta 22737372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 102 - 314
Target Start/End: Complemental strand, 19994847 - 19994641
Alignment:
Q  102 tcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgc-aaggctgaagcccacaatctagatc 200  Q
    |||||||||||| ||||||  |||||  |||| |||||||||||||| ||||| ||||| |||| ||||| ||| ||| |||||||||| ||||||||||    
T  19994847 tcgacacatatatgcatgtggtaccaaatcacctcaaggtcgtcacccatatcaagaccaccaagggtctctgcaaagcctgaagcccaaaatctagatc 19994748  T
Q  201 actaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaa 300  Q
    ||||| ||||||||||||||||||||||||||  ||||||||| || ||| ||||| ||||||| ||||||||| |||  |  |||| ||||||| ||||    
T  19994747 actaa-ggatctctgcaagaccgaagtccaca--actagatca-tagatggtctctgctaggcctgagcccaattatg--aataaaacatcatat-aaaa 19994655  T
Q  301 tctcaacacgacta 314  Q
    ||||||| ||||||    
T  19994654 tctcaacccgacta 19994641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 191 - 287
Target Start/End: Complemental strand, 20649049 - 20648954
Alignment:
Q  191 aatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||| ||||||||| |||||||||||||    
T  20649049 aatctagatcactaa-ggatctctgcaagaccgaagtccccaaaactagatcactaaatgatctctgctaggctggagcccaaagatgcaacaaaaa 20648954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 102 - 273
Target Start/End: Original strand, 25120967 - 25121134
Alignment:
Q  102 tcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatca 201  Q
    |||||||||||| ||||||  |||||  |||| |||||||||||||| ||||| ||||| |||| ||||| |||||||| |||||||| || ||||||||    
T  25120967 tcgacacatatatgcatgtggtaccaaatcacctcaaggtcgtcacccatatccagaccaccaagggtctctgcaaggccgaagcccaaaaactagatca 25121066  T
Q  202 ctaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaa 273  Q
    | || ||||||||||||||||||||||||||  |||||||||| |||||||||||   |||||| |||||||    
T  25121067 cgaa-ggatctctgcaagaccgaagtccaca--actagatcac-aaatgatctctgtaaggccgaagcccaa 25121134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 220 - 313
Target Start/End: Complemental strand, 20568848 - 20568758
Alignment:
Q  220 accgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaatctcaacacgact 313  Q
    |||||||||||||| |||||||||| || |||||||| |||||||||||||||||||||||||||||| |||||||  ||||||||||||||||    
T  20568848 accgaagtccacaa-actagatcaccaa-tgatctctgctaggccggagcccaatgatgcaacaaaaacatcatat-caaatctcaacacgact 20568758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 220 - 313
Target Start/End: Complemental strand, 20575041 - 20574951
Alignment:
Q  220 accgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaatctcaacacgact 313  Q
    |||||||||||||| |||||||||| || |||||||| |||||||||||||||||||||||||||||| |||||||  ||||||||||||||||    
T  20575041 accgaagtccacaa-actagatcaccaa-tgatctctgctaggccggagcccaatgatgcaacaaaaacatcatat-caaatctcaacacgact 20574951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 314
Target Start/End: Original strand, 25121078 - 25121212
Alignment:
Q  173 tgcaaggctgaagcccacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagccca 272  Q
    |||||| | |||| |||||| ||||||||| |||| ||||||| ||| |||||| ||| || |||||||||| ||||||||||| |||||||| ||||||    
T  25121078 tgcaagaccgaagtccacaa-ctagatcacaaatg-atctctgtaaggccgaagcccaaaa-actagatcac-aaatgatctctgctaggccgaagccca 25121173  T
Q  273 atgatgcaacaaaaatatcatataaaaatctcaacacgacta 314  Q
    || |||  |  |||| ||||||| ||||||||||||||||||    
T  25121174 ataatg--aataaaacatcatat-aaaatctcaacacgacta 25121212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 192
Target Start/End: Original strand, 16416765 - 16416855
Alignment:
Q  102 tcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaa 192  Q
    |||||||||||| ||||||  |||||  |||| |||||||| ||||||| ||| ||||| | |||||| |||||||| | |||| ||||||    
T  16416765 tcgacacatatatgcatgtggtaccaaatcacctcaaggtcatcacctaaatccagaccactaaaggtttttgcaagaccgaagtccacaa 16416855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 37655300 - 37655243
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacct 149  Q
    |||||||||||||||||||||| ||||||  | |||  |||| |||||||||||||||    
T  37655300 tgcacctagttcgacacatatatgcatgtggtgccaaatcacctcaaggtcgtcacct 37655243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 20655724 - 20655684
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccat 128  Q
    |||||||||||||||||||||||||| ||||||  ||||||    
T  20655724 gatgtgcacctagttcgacacatatatgcatgtggtaccat 20655684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0589 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: scaffold0589
Description:

Target: scaffold0589; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 6327 - 6552
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||| |||||||||||||  ||| |||| || ||  | ||||||    
T  6327 gatgtgcacctagttcgacacatatatgcatgtggtaccatttcacttcaaggtcgtcacatatatctagaccgaaaaaagtctatgaaaaaccgaagcc 6426  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
     ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  6427 aacaatctagatcactaatggatctctgcaagaccgaagtccacaaaactagataactaaatgatctctgctaggccggagcccaatgatgcaacaaaaa 6526  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     ||||||| ||||||||||||| ||||    
T  6527 catcatat-aaaatctcaacacaacta 6552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 145374 - 145598
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||||||||||||||||||||||| ||||||  |||||||| ||||| ||||| ||||||||||||||| || ||||||||| |||||||| | ||||    
T  145374 gatgtgcacctagttcgacacatatatgcatgtggtaccattttacttcgaggtcatcacctatatctagatcgtcaaaggtctctgcaaggccggagcc 145473  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  145474 cacaatctagatcactaatggatctttgcaagaccgaagtccacaaaactagatcactaaatgatctctgctaggccggagcccaatgatgcaac-aaaa 145572  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     |||||||  |||||||||||||||||    
T  145573 catcatat-caaatctcaacacgacta 145598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 30523 - 30746
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||||||||||  ||||||||||| |||||| |||| |||||||||||||||| ||||||||||||||| || ||||||||| || ||||| ||||||    
T  30523 gatgtgcacctagcccgacacatatatgcatgtgatacaatttcacttcaaggtcatcacctatatctagaacgtcaaaggtctctgaaaggccgaagcc 30622  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||| || ||||    
T  30623 cacaatctagatcactaatggatctctgcaagaccgaagtccacaaaactagatcactaaatgatctctgctaggtcggagcccaatgatgc-accaaaa 30721  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     |||||||   ||||||||||||||||    
T  30722 catcatat--caatctcaacacgacta 30746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 68834 - 68895
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacct 149  Q
    |||||||||||||| ||||||||||| ||||||  |||||| |||| |||||||||||||||    
T  68834 gatgtgcacctagtccgacacatatatgcatgtggtaccatatcacctcaaggtcgtcacct 68895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 91 - 314
Target Start/End: Original strand, 19404029 - 19404250
Alignment:
Q  91 gtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccac 190  Q
    ||||||||||  ||||||||||| ||||||  ||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||  |||||||||    
T  19404029 gtgcacctagcccgacacatatatgcatgtggtaccatttcacttcaaggttgtcacctatatctagaccgtcaaaggtctctgcaaggtcgaagcccac 19404128  T
Q  191 aatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatat 290  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||  ||||||||||  | ||||||||||||||||||||||||||||||    
T  19404129 aatctagatcaccaatggatctctgcaagaccgaagtccacaaaactagatcac-caatgatctctgatgggccggagcccaatgatgcaacaaaaatat 19404227  T
Q  291 catataaaaatctcaacacgacta 314  Q
    ||||| ||||| ||||||||||||    
T  19404228 catat-aaaatatcaacacgacta 19404250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 23453395 - 23453620
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||| ||||||||||||||||||| ||||||  |||||| |||| ||||||||||||||||||||||||||   || ||||  |||||||| ||||||    
T  23453395 gatgtgaacctagttcgacacatatatgcatgtggtaccatatcacctcaaggtcgtcacctatatctagaccattaatggtccctgcaaggccgaagcc 23453494  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    | ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| || ||||||||||||    
T  23453495 cgcaatctagatcactaatggatctttgcaagaccgaagtccacaaaactagatcactaaatgatctctgctaggccggagcccgatcatgcaacaaaaa 23453594  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     ||||||| ||||||||||||||||||    
T  23453595 catcatat-aaaatctcaacacgacta 23453620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 23464900 - 23465125
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||| ||||||||||||||||||| ||||||  |||||| |||| ||||||||||||||||||||||||||   || ||||  |||||||| ||||||    
T  23464900 gatgtgaacctagttcgacacatatatgcatgtggtaccatatcacctcaaggtcgtcacctatatctagaccattaatggtccctgcaaggccgaagcc 23464999  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    | ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| || ||||||||||||    
T  23465000 cgcaatctagatcactaatggatctttgcaagaccgaagtccacaaaactagatcactaaatgatctctgctaggccggagcccgatcatgcaacaaaaa 23465099  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     ||||||| ||||||||||||||||||    
T  23465100 catcatat-aaaatctcaacacgacta 23465125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 88 - 314
Target Start/End: Complemental strand, 24184928 - 24184703
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||||||||||| ||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||   ||||    
T  24184928 gatgtgcacctagtccgacacatatatgcatgtggtaccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctcgacaaggccagagcc 24184829  T
Q  188 cac-aatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaa 286  Q
    ||| ||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  24184828 cacaaatctagatcactaa-ggatctctgcaagaccgaaatccacaaaactagatcactaaatgatctctgctaggccggagcccaaagatgcaacaaaa 24184730  T
Q  287 atatcatataaaaatctcaacacgacta 314  Q
    | ||| |||  |||||||||| ||||||    
T  24184729 acatcttat-caaatctcaactcgacta 24184703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 92 - 314
Target Start/End: Original strand, 3672442 - 3672662
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccaca 191  Q
    |||| ||||||||||||||||| ||||||  |||||  |||||||||||||||||||||||||||||||  ||||||||| |||||||| ||||||||||    
T  3672442 tgcatctagttcgacacatatatgcatgtggtaccaactcacttcaaggtcgtcacctatatctagaccatcaaaggtctctgcaaggccgaagcccaca 3672541  T
Q  192 atctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatc 291  Q
    |||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||| | |||||  ||||||||| ||||||||||| |||    
T  3672542 atctagatcactaatggatctctgcaaggccgaagcccacaa-actagatcactaaatgatctctgcaaggccaaagcccaatggtgcaacaaaaacatc 3672640  T
Q  292 atataaaaatctcaacacgacta 314  Q
    |||| ||||||||||| ||||||    
T  3672641 atat-aaaatctcaactcgacta 3672662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 88 - 271
Target Start/End: Original strand, 23460639 - 23460822
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||| ||||||||||||||||||| ||||||  |||||| |||| ||||||||||||||||||||||||||   || ||||  |||||||| ||||||    
T  23460639 gatgtgaacctagttcgacacatatatgcatgtggtaccatatcacctcaaggtcgtcacctatatctagaccattaatggtccctgcaaggccgaagcc 23460738  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagccc 271  Q
    | ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  23460739 cgcaatctagatcactaatggatctttgcaagaccgaagtccacaaaactagatcactaaatgatctctgctaggccggagccc 23460822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 103 - 314
Target Start/End: Complemental strand, 11338565 - 11338356
Alignment:
Q  103 cgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaa-tctagatca 201  Q
    |||||| |||| ||||||  |||||| ||| | |||||||||||| ||||||||||||| ||||||||| |||||||  | ||||||||| |||||||||    
T  11338565 cgacacgtatatgcatgttgtaccatatcattccaaggtcgtcacttatatctagaccgtcaaaggtctctgcaaggacggagcccacaaatctagatca 11338466  T
Q  202 ctaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaat 301  Q
    |||| |||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||| ||| |||||||||| ||||||| |||||||  ||||    
T  11338465 ctaa-ggatctatgcaagaccgaagtccacaaaactagatcactaaatgatctctgctaggcc-gagaccaatgatgcgacaaaaacatcatat-caaat 11338369  T
Q  302 ctcaacacgacta 314  Q
    ||||||| |||||    
T  11338368 ctcaacatgacta 11338356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 102 - 314
Target Start/End: Original strand, 21392653 - 21392859
Alignment:
Q  102 tcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatca 201  Q
    |||||||||||| ||||||  |||||  |||  |||||||||||||| ||||| ||||| |||| ||||| ||||||||||||| |||||| ||||||||    
T  21392653 tcgacacatatatgcatgtggtaccaaatcaactcaaggtcgtcaccgatatccagaccaccaagggtctctgcaaggctgaagtccacaaactagatca 21392752  T
Q  202 ctaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaat 301  Q
    |||| ||||||||||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||||||| |||  |  |||| ||||||| | |||    
T  21392753 ctaa-ggatctctgcaagactgaagtccacaa-actagatcact-aatgatctctgctaggccggagcccaataatg--aagaaaacatcatat-ataat 21392846  T
Q  302 ctcaacacgacta 314  Q
    |||||||||||||    
T  21392847 ctcaacacgacta 21392859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 92 - 226
Target Start/End: Complemental strand, 5452487 - 5452353
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccaca 191  Q
    |||||||||||||||||||||| ||||||  |||||  |||| ||||||||||||| | |||||||||| |||||||||| | |||||| ||||||||||    
T  5452487 tgcacctagttcgacacatatatgcatgtggtaccaaatcacctcaaggtcgtcacatttatctagaccaccaaaggtctctacaaggccgaagcccaca 5452388  T
Q  192 atctagatcactaatggatctctgcaagaccgaag 226  Q
    | ||||||||||||  |||||||||||| ||||||    
T  5452387 aactagatcactaaatgatctctgcaaggccgaag 5452353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 210 - 314
Target Start/End: Complemental strand, 5452410 - 5452308
Alignment:
Q  210 tctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaatctcaacac 309  Q
    ||||| |||| |||||| |||||| |||||||||||||||||||||| | |||||| ||||||||||||||||||||| ||||||| |||||||||||||    
T  5452410 tctctacaaggccgaagcccacaa-actagatcactaaatgatctctgcaaggccgaagcccaatgatgcaacaaaaacatcatat-aaaatctcaacac 5452313  T
Q  310 gacta 314  Q
    |||||    
T  5452312 gacta 5452308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 28258112 - 28258177
Alignment:
Q  207 ggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaat 274  Q
    ||||||||||||||||||||||||||| |||||||| | ||| ||||||| |||||||||||||||||    
T  28258112 ggatctctgcaagaccgaagtccacaa-actagatctc-aaaagatctctgctaggccggagcccaat 28258177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 274
Target Start/End: Complemental strand, 21653064 - 21652929
Alignment:
Q  135 tcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatcactaatggatctctgcaagaccgaagtccacaat 234  Q
    |||||||||||||| ||||| ||||| |||| ||||| |||||| | |||| |||||| ||||||| | ||   ||||||||||| ||||||  | |||     
T  21653064 tcaaggtcgtcacccatatccagaccaccaagggtctctgcaagaccgaagtccacaaactagatctc-aaaatatctctgcaaggccgaag--cccaaa 21652968  T
Q  235 actagatcactaaatgatctcttctaggccggagcccaat 274  Q
    |||| ||| | ||| ||||||| |||||||||||||||||    
T  21652967 actatatctc-aaaagatctctgctaggccggagcccaat 21652929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 21615529 - 21615582
Alignment:
Q  96 cctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacct 149  Q
    |||||||||||||||||| ||||||  |||||  |||| |||||||||||||||    
T  21615529 cctagttcgacacatatatgcatgtggtaccaaatcacctcaaggtcgtcacct 21615582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 24227122 - 24227065
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacct 149  Q
    |||||||||||||||||||||| ||||||  ||||   |||| |||||||||||||||    
T  24227122 tgcacctagttcgacacatatatgcatgtcgtaccgaatcacctcaaggtcgtcacct 24227065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 1863 - 2088
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    ||||||||||||||| |||||||||| ||||||  ||||||||||||||||||||||| | | |||||||||||   || ||||||| ||  | ||||||    
T  1863 gatgtgcacctagtttgacacatatatgcatgtggtaccatttcacttcaaggtcgtctcttttatctagaccgtttaatgtctttgtaattccgaagcc 1962  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
     ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||    
T  1963 tacaatctagatcactaatggatctctgcaagaccgaagtccacaaaactagatcactaaatgatctctgctaggccggagcccaatgatgcaacagaaa 2062  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     ||||||| ||||||||||||||||||    
T  2063 catcatat-aaaatctcaacacgacta 2088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 10109 - 10334
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||| ||||||  ||||||||| | ||||||  ||||||||||||| ||||| ||||||||||||||||||  ||||||||| | |||||  | ||||    
T  10109 gatgtgtacctagcccgacacatacatgcatgtggtaccatttcactttaaggttgtcacctatatctagaccatcaaaggtctctacaaggacggagcc 10208  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||| || ||||||||||||    
T  10209 cacaatctagatcactaatggatctctgcaagaccgaagtccgcaaaactagatcactaaatgatctctactaggtcggagcccgatcatgcaacaaaaa 10308  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     ||||||| ||||||||||||||||||    
T  10309 catcatat-aaaatctcaacacgacta 10334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 164 - 314
Target Start/End: Original strand, 76910 - 77054
Alignment:
Q  164 aaaggtctttgcaaggctgaagcccacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggc 263  Q
    |||| ||| |||||||| |||||||| || ||||||||| |||| ||||||||||||||||||||||||| |||||||| | ||| ||||||| ||||||    
T  76910 aaagatctctgcaaggccgaagcccaaaagctagatcacaaatg-atctctgcaagaccgaagtccacaa-actagatctc-aaaagatctctgctaggc 77006  T
Q  264 cggagcccaatgatgcaacaaaaatatcatataaaaatctcaacacgacta 314  Q
    ||||||||||| |||  |  |||| ||||||| ||||||||||||||||||    
T  77007 cggagcccaataatg--aataaaacatcatat-aaaatctcaacacgacta 77054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 210 - 314
Target Start/End: Original strand, 87013 - 87112
Alignment:
Q  210 tctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaatctcaacac 309  Q
    |||||||||||||||||||||||| |||||||| | ||| ||||||| ||||||||||||||||| |||  |  |||| ||||||| |||||||||||||    
T  87013 tctctgcaagaccgaagtccacaa-actagatctc-aaaagatctctgctaggccggagcccaataatg--aataaaacatcatat-aaaatctcaacac 87107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 256
Target Start/End: Original strand, 76810 - 76959
Alignment:
Q  104 gacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatcact 203  Q
    |||||||||| ||||||  |||||  |||| |||||||||||||||  ||| ||||| |||| ||||| ||||||   |||| |||||| ||||||| |     
T  76810 gacacatatatgcatgtggtaccaaatcacctcaaggtcgtcacctgaatccagaccaccaagggtctctgcaagatcgaagtccacaaactagatctc- 76908  T
Q  204 aatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctct 256  Q
    ||  |||||||||||| |||||| ||| ||  ||||||||| |||||||||||    
T  76909 aaaagatctctgcaaggccgaagccca-aaagctagatcac-aaatgatctct 76959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 108097 - 108320
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||  ||| ||||| |||||||||| ||||    
T  108097 gatgtgcaccaagttcgacacatatatgcatgtggtaccatttcacttcaaggtcgtcacctatatctagaccatcaagggtctctgcaaggctggagcc 108196  T
Q  188 cacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaa 287  Q
    |||||||||||||||||||||||||||||| |  | | | |||||| |||||||| ||||||||||||| | || ||| ||||||| |||||||||||||    
T  108197 cacaatctagatcactaatggatctctgcagggtcaaggcccacaa-actagatctctaaatgatctctgcaagaccgaagcccaacgatgcaacaaaaa 108295  T
Q  288 tatcatataaaaatctcaacacgacta 314  Q
     |||||||  |||||||||||||||||    
T  108296 catcatat--aaatctcaacacgacta 108320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 113941 - 113891
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaa 138  Q
    |||||||||||||| ||||||||||| ||||||  ||||||||||||||||    
T  113941 gatgtgcacctagtccgacacatatatgcatgtggtaccatttcacttcaa 113891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 32034 - 32253
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||| ||||||  ||||||||||| ||||||  ||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||| | ||||    
T  32034 gatgtgtacctagaccgacacatatatgcatgtggtaccatttcacctcaaggtcgtcacctatatctagaccgtcaaaggtctctgcaaggccggagcc 32133  T
Q  188 cacaa-tctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaa 286  Q
    ||||| ||||||||||      ||||||||||||||||||||||||| |||||||||| || |||||||| |||||||||||||||||||||||||||||    
T  32134 cacaaatctagatcac------atctctgcaagaccgaagtccacaaaactagatcaccaa-tgatctctgctaggccggagcccaatgatgcaacaaaa 32226  T
Q  287 atatcatataaaaatctcaacacgacta 314  Q
    | |||||||  |||||||||||||||||    
T  32227 acatcatat-caaatctcaacacgacta 32253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 146 - 314
Target Start/End: Complemental strand, 6305 - 6139
Alignment:
Q  146 acctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcact 245  Q
    ||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||  |||||| |||||||||||    
T  6305 acctatatctagaccaccaaaggtctctgcagggctgaagcccacaatctagatcactaatggatctctgcaaggccgaaacccacaa-actagatcact 6207  T
Q  246 aaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaatctcaacacgacta 314  Q
    ||||||||||| | |||||| ||||||||||||||||||||| ||| ||| ||||||||||||||||||    
T  6206 aaatgatctctgcaaggccgaagcccaatgatgcaacaaaaacatcttat-aaaatctcaacacgacta 6139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 130 - 314
Target Start/End: Complemental strand, 72123 - 71943
Alignment:
Q  130 tcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatcactaatggatctctgcaagaccgaagtcc 229  Q
    |||| ||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  72123 tcacctcaaggtcgtcacctatatctagaccgtcaaaggtctctgcaaggccgaagcccacaatctagatcact-atggatctctgcaagaccgaagtcc 72025  T
Q  230 acaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaatctcaacacgacta 314  Q
    |||| ||||||||||  |||||||||| |||||||||||||||| ||||||||||||| ||| |||  |||||||| ||||||||    
T  72024 acaa-actagatcac-caatgatctctgctaggccggagcccaaagatgcaacaaaaacatcttat-caaatctcatcacgacta 71943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0342 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0342
Description:

Target: scaffold0342; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 4287 - 4512
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    |||||||||||||  |||||||||||  |||||  ||||||||||||||||||||||||||||||||||||||  |||| |||| |||||||| | ||||    
T  4287 gatgtgcacctagcccgacacatatatacatgtggtaccatttcacttcaaggtcgtcacctatatctagaccatcaaatgtctctgcaaggccggagcc 4386  T
Q  188 cac-aatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaa 286  Q
    ||| ||||||||| ||||| |||||||| |||||| |||||||||||  |||||||||||||||||| || ||| |||||||||||| ||||||||||||    
T  4387 cacaaatctagattactaa-ggatctctacaagactgaagtccacaaatctagatcactaaatgatccctgctacgccggagcccaaagatgcaacaaaa 4485  T
Q  287 atatcatataaaaatctcaacacgacta 314  Q
    | ||| |||  |||||||||| ||||||    
T  4486 acatcttat-caaatctcaactcgacta 4512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 183 - 314
Target Start/End: Complemental strand, 23320 - 23190
Alignment:
Q  183 aagcccacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaac 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||    
T  23320 aagcccacaatctagatcactaatggatctctgcaagaccgaagtccacaaaactagaccactaaatgatctctgctaggccagagcccaatgatgcaac 23221  T
Q  283 aaaaatatcatataaaaatctcaacacgacta 314  Q
    ||||| ||||||| |||||||||||| |||||    
T  23220 aaaaacatcatat-aaaatctcaacatgacta 23190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 26585 - 26502
Alignment:
Q  103 cgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    ||||||||||| ||||||  ||||||| ||| ||||||||||||||||||||||||||  ||||||||| |||||||| ||||||    
T  26585 cgacacatatatgcatgtggtaccatt-cacctcaaggtcgtcacctatatctagaccatcaaaggtctctgcaaggccgaagcc 26502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 114 - 314
Target Start/End: Original strand, 20171 - 20368
Alignment:
Q  114 agcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatcactaatggatctc 213  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||  ||||||| | ||||||||  ||||||||||||||||| ||||||||||||     
T  20171 agcatgtggtaccatttcacttcaaggtcgtcacctatatctagaccatcaaaggtatctgcaaggccaaagcccacaatctagattactaatggatctt 20270  T
Q  214 tgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaatctcaacacgact 313  Q
    || | |  | ||| |||||| |||||||||||||||||||||| | |||||| |||||||| |||||||||||| |||||||  ||||||||||||||||    
T  20271 tgtagggtcaaagcccacaa-actagatcactaaatgatctctgcaaggccgaagcccaatcatgcaacaaaaacatcatat--aaatctcaacacgact 20367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 114 - 314
Target Start/End: Original strand, 27000 - 27197
Alignment:
Q  114 agcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatcactaatggatctc 213  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||  ||||||| | ||||||||  ||||||||||||||||| ||||||||||||     
T  27000 agcatgtggtaccatttcacttcaaggtcgtcacctatatctagaccatcaaaggtatctgcaaggccaaagcccacaatctagattactaatggatctt 27099  T
Q  214 tgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaatctcaacacgact 313  Q
    || | |  | ||| |||||| |||||||||||||||||||||| | |||||| |||||||| |||||||||||| |||||||  ||||||||||||||||    
T  27100 tgtagggtcaaagcccacaa-actagatcactaaatgatctctgcaaggccgaagcccaatcatgcaacaaaaacatcatat--aaatctcaacacgact 27196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 104 - 314
Target Start/End: Original strand, 7255 - 7463
Alignment:
Q  104 gacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaagg-tctttgcaaggctgaagcccacaatctagatcac 202  Q
    |||||||||| ||||||  ||| |  |||| ||||||||||||||||| || ||||| |||| || ||| ||||||||| |||||||||| |||||||||    
T  7255 gacacatatatgcatgtggtactaaatcacctcaaggtcgtcacctatctccagaccaccaaggggtctctgcaaggctaaagcccacaaactagatcac 7354  T
Q  203 taatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaatc 302  Q
    |||||||||||| |||||||||| ||||||| |||||||||| ||| ||| ||| ||||||||||||||||||||||||| |||| ||||||| ||||||    
T  7355 taatggatctctacaagaccgaaatccacaa-actagatcaccaaaggatttctgctaggccggagcccaatgatgcaac-aaaacatcatat-aaaatc 7451  T
Q  303 tcaacacgacta 314  Q
    |||||| |||||    
T  7452 tcaacatgacta 7463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 102 - 247
Target Start/End: Original strand, 21083 - 21226
Alignment:
Q  102 tcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatca 201  Q
    |||||||||||| ||||||  |||||  || | |||||||||||||| ||||| ||||| |||||||||| |||||||| ||| ||||||||||||||||    
T  21083 tcgacacatatatgcatgtggtaccaaatctcctcaaggtcgtcacccatatccagaccaccaaaggtctctgcaaggccgaaccccacaatctagatca 21182  T
Q  202 ctaatggatctctgcaagaccgaagtccacaatactagatcactaa 247  Q
    || ||||||||||||||||||||||||||||| |||||||||||||    
T  21183 ct-atggatctctgcaagaccgaagtccacaa-actagatcactaa 21226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 102 - 247
Target Start/End: Original strand, 28673 - 28816
Alignment:
Q  102 tcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatca 201  Q
    |||||||||||| ||||||  | |||  || | |||||||||||||  ||||  ||||| |||| ||||| |||||||| ||||||||||||||||||||    
T  28673 tcgacacatatatgcatgtggtgccaaatctcctcaaggtcgtcactcatatgcagaccaccaagggtctctgcaaggccgaagcccacaatctagatca 28772  T
Q  202 ctaatggatctctgcaagaccgaagtccacaatactagatcactaa 247  Q
    || ||||||||||||||||||||||||||||| |||||||||||||    
T  28773 ct-atggatctctgcaagaccgaagtccacaa-actagatcactaa 28816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 272
Target Start/End: Original strand, 21194 - 21290
Alignment:
Q  173 tgcaaggctgaagcccacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagccca 272  Q
    |||||| | |||| |||||| |||||||||||| |||||||||||||||| ||||||| || |||||| ||| || |||||||| |||||||||||||||    
T  21194 tgcaagaccgaagtccacaaactagatcactaa-ggatctctgcaagaccaaagtccataa-actagaccaccaa-tgatctctgctaggccggagccca 21290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 314
Target Start/End: Original strand, 28784 - 28918
Alignment:
Q  173 tgcaaggctgaagcccacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagccca 272  Q
    |||||| | |||| |||||| |||||||||||| ||||||||||| |||| ||||||| || ||||||||||  | |||||||| |||||||||||||||    
T  28784 tgcaagaccgaagtccacaaactagatcactaa-ggatctctgca-gaccaaagtccataa-actagatcaccca-tgatctctgctaggccggagccca 28879  T
Q  273 atgatgcaacaaaaatatcatataaaaatctcaacacgacta 314  Q
    || |||  |  |||| ||||||| ||||||||||||||||||    
T  28880 ataatg--aataaaacatcatat-aaaatctcaacacgacta 28918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 102 - 273
Target Start/End: Complemental strand, 13479 - 13310
Alignment:
Q  102 tcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaagg-ctgaagcccacaatctagatc 200  Q
    |||||||||||| ||||||  |||||  ||||||||||||||||||| ||||| ||||| |||| ||||| ||||||| |||||||||| ||||||||||    
T  13479 tcgacacatatatgcatgtggtaccaaatcacttcaaggtcgtcacccatatccagaccaccaagggtctctgcaaggcctgaagcccaaaatctagatc 13380  T
Q  201 actaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaa 273  Q
    ||||| |||||||||||||| |||||||||||| |||||||||| ||||||||||| | | ||||| ||||||    
T  13379 actaa-ggatctctgcaagatcgaagtccacaa-actagatcac-aaatgatctctgcaacgccggggcccaa 13310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0673 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0673
Description:

Target: scaffold0673; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 150 - 274
Target Start/End: Complemental strand, 2491 - 2369
Alignment:
Q  150 atatctagaccgccaaaggtctttgcaaggc-tgaagcccacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaa 248  Q
    ||||| ||||| |||| ||||| |||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||    
T  2491 atatccagaccaccaagggtctctgcaaggcctgaagcccaaaatctagatcactaa-ggatctctgcaagaccgaagtccacaa-actagatcac-aaa 2395  T
Q  249 tgatctcttctaggccggagcccaat 274  Q
    |||||||| |||||||||||||||||    
T  2394 tgatctctgctaggccggagcccaat 2369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 104 - 314
Target Start/End: Complemental strand, 256603 - 256399
Alignment:
Q  104 gacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatcact 203  Q
    |||||||||| ||||||  |||||  |||| |||||||||||||||  ||| ||||| |||| ||||| | |||| | |||| |||||| |||||||||     
T  256603 gacacatatatgcatgtggtaccaaatcacctcaaggtcgtcacctgaatccagaccaccaagggtctctacaagaccgaagtccacaaactagatcaca 256504  T
Q  204 aatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaatct 303  Q
    ||| |||||||||||||||||||||||||| |||||||| | ||| ||||||| ||||||| ||||||||| |||  |  |||| ||||||| |||||||    
T  256503 aat-gatctctgcaagaccgaagtccacaa-actagatctc-aaaagatctctgctaggccagagcccaataatg--aataaaacatcatat-aaaatct 256410  T
Q  304 caacacgacta 314  Q
    |||||||||||    
T  256409 caacacgacta 256399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0521 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0521
Description:

Target: scaffold0521; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 92 - 207
Target Start/End: Original strand, 7089 - 7204
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcactt-caaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccac 190  Q
    |||||||||||||||||||||| ||||||  ||||| ||| ||| ||||||||||||||||||||||||| | || ||||| |||||||| |||||||||    
T  7089 tgcacctagttcgacacatatatgcatgtggtaccaattctctttcaaggtcgtcacctatatctagaccactaagggtctctgcaaggccgaagcccac 7188  T
Q  191 aatctagatcactaatg 207  Q
    || ||||||||| ||||    
T  7189 aa-ctagatcaccaatg 7204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0521; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 312
Target Start/End: Original strand, 7150 - 7265
Alignment:
Q  192 atctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatc 291  Q
    ||||||| |||||| || |||||||||| |||||| ||||||  ||||||||| || |||||| | | |||| | | ||||||||||||||||||| |||    
T  7150 atctagaccactaaggg-tctctgcaaggccgaagcccacaa--ctagatcaccaa-tgatctttgcaaggctgcaacccaatgatgcaacaaaaacatc 7245  T
Q  292 atataaaaatctcaacacgac 312  Q
    |||| ||||||||||||||||    
T  7246 atat-aaaatctcaacacgac 7265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 314
Target Start/End: Complemental strand, 26359 - 26215
Alignment:
Q  164 aaaggtctttgcaaggctgaagcccacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggc 263  Q
    |||| ||| |||||||| |||||||| || ||||||||| |||| ||||||||||||||||||||||||| |||||||| | ||| ||||| | ||||||    
T  26359 aaagatctctgcaaggccgaagcccaaaaactagatcacaaatg-atctctgcaagaccgaagtccacaa-actagatctc-aaaagatctatgctaggc 26263  T
Q  264 cggagcccaatgatgcaacaaaaatatcatataaaaatctcaacacgacta 314  Q
     |||||||||| |||  |  |||| ||||||| ||||||||||||||||||    
T  26262 tggagcccaataatg--aataaaacatcatat-aaaatctcaacacgacta 26215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 256
Target Start/End: Complemental strand, 26459 - 26310
Alignment:
Q  104 gacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatcact 203  Q
    |||||||||| ||||||  |||||  |||| |||||||||||||||  ||| ||||| |||| ||||| |||||| | |||| |||||| ||||||| |     
T  26459 gacacatatatgcatgtggtaccaaatcacctcaaggtcgtcacctgaatccagaccaccaagggtctctgcaagaccgaagtccacaaactagatctc- 26361  T
Q  204 aatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctct 256  Q
    ||  |||||||||||| |||||| ||| || |||||||||| |||||||||||    
T  26360 aaaagatctctgcaaggccgaagccca-aaaactagatcac-aaatgatctct 26310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0750 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0750
Description:

Target: scaffold0750; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 2882 - 2799
Alignment:
Q  103 cgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcc 187  Q
    ||||||||||| ||||||  ||||||| ||| ||||||||||||||||||||||||||  ||||||||| |||||||| ||||||    
T  2882 cgacacatatatgcatgtggtaccatt-cacctcaaggtcgtcacctatatctagaccatcaaaggtctctgcaaggccgaagcc 2799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 274
Target Start/End: Original strand, 94807 - 94914
Alignment:
Q  164 aaaggtctttgcaaggctgaagcccacaatctagatcactaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggc 263  Q
    |||| ||| |||||||| |||||||| || ||||||||| |||| ||||||||||||| ||||||||||| |||||||| | ||| ||||||| | ||||    
T  94807 aaagatctctgcaaggccgaagcccaaaaactagatcacaaatg-atctctgcaagactgaagtccacaa-actagatctc-aaaagatctctgcaaggc 94903  T
Q  264 cggagcccaat 274  Q
    |||||||||||    
T  94904 cggagcccaat 94914  T

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Target: scaffold0243 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 3954 - 3893
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacct 149  Q
    |||||||||||||||||||||||||| ||||||  |||||  |||| |||||||||||||||    
T  3954 gatgtgcacctagttcgacacatatatgcatgtggtaccaaatcacctcaaggtcgtcacct 3893  T

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Target: scaffold0692 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 274
Target Start/End: Complemental strand, 1089 - 923
Alignment:
Q  104 gacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatcact 203  Q
    |||||||||| ||||||  |||||  || | |||||||||||||| || || ||||| |||| ||||| |||||| | |||| |||||| || |||| |     
T  1089 gacacatatatgcatgtggtaccaaatctcctcaaggtcgtcacccatgtccagaccaccaagggtctctgcaagaccgaagtccacaaacttgatctc- 991  T
Q  204 aatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaat 274  Q
    ||  |||||||||||| ||||| ||| ||| |||||||| | ||| ||||||| |||||||||||||||||    
T  990 aaaagatctctgcaaggccgaa-tcc-caaaactagatctc-aaaagatctctgctaggccggagcccaat 923  T

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Target: scaffold0480 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0480
Description:

Target: scaffold0480; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 314
Target Start/End: Complemental strand, 7058 - 6852
Alignment:
Q  102 tcgacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaaggctgaagcccacaatctagatca 201  Q
    |||||||||||| ||||||  |||||  | || |||||||||||||  ||||| | ||| |||| ||||| |||||| | |||| |||| | |||||||     
T  7058 tcgacacatatatgcatgtggtaccaaataacctcaaggtcgtcactcatatccaaaccaccaagggtctctgcaagaccgaagtccacgaactagatct 6959  T
Q  202 ctaatggatctctgcaagaccgaagtccacaatactagatcactaaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaat 301  Q
    | ||  |||||||||||| |||||||||| |  |||||||| | ||| ||||||| |||||||| |||||||| |||  |  |||| ||||||| |||||    
T  6958 c-aaaagatctctgcaaggccgaagtcca-ataactagatctc-aaaagatctctgctaggccgtagcccaataatg--aataaaacatcatat-aaaat 6865  T
Q  302 ctcaacacgacta 314  Q
    |||||| ||||||    
T  6864 ctcaacccgacta 6852  T

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Target: scaffold0292 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 18108 - 18182
Alignment:
Q  104 gacacatataagcatgtaataccatttcacttcaaggtcgtcacctatatctagaccgccaaaggtctttgcaag 178  Q
    |||||||||| ||||||  |||||  |||| |||||||||||||| ||||| ||||| |||| ||||| ||||||    
T  18108 gacacatatatgcatgtggtaccaaatcacctcaaggtcgtcacccatatccagaccaccaagggtctctgcaag 18182  T

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Target: scaffold0251 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 15418 - 15353
Alignment:
Q  246 aaatgatctcttctaggccggagcccaatgatgcaacaaaaatatcatataaaaatctcaacacgacta 314  Q
    ||||||||||| ||||||||||||||||| |||  |  |||| ||||||| ||||||||||||||||||    
T  15418 aaatgatctctgctaggccggagcccaataatg--aataaaacatcatat-aaaatctcaacacgacta 15353  T

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Target: scaffold0193 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 3268 - 3325
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacct 149  Q
    |||||||||||||||||||||| ||||||  |||||  |||| || ||||||||||||    
T  3268 tgcacctagttcgacacatatatgcatgtggtaccaaatcacctctaggtcgtcacct 3325  T

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Target: scaffold0190 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 8585 - 8646
Alignment:
Q  88 gatgtgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacct 149  Q
    |||||||||||||| ||||||||||| ||||||  |||||  |||| |||||| ||||||||    
T  8585 gatgtgcacctagtccgacacatatatgcatgtggtaccaaatcacctcaaggccgtcacct 8646  T

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Target: scaffold0080 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 25267 - 25210
Alignment:
Q  92 tgcacctagttcgacacatataagcatgtaataccatttcacttcaaggtcgtcacct 149  Q
    |||||||||||||||||||||| ||||||  ||| |  |||| |||||||||||||||    
T  25267 tgcacctagttcgacacatatatgcatgtggtacaaaatcacctcaaggtcgtcacct 25210  T

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