View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15571_high_8 (Length: 301)
Name: NF15571_high_8
Description: NF15571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15571_high_8 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 13879686 - 13879386
Alignment:
| Q |
1 |
acaacaacaacgatgatgatgatcttgttctctgggattttacggagactgaggagtctgtgattttgcggtcgaatcttgtcgctgacaacgtgaggaa |
100 |
Q |
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| T |
13879686 |
acaacaacgatgatgatgatgatcttgttctctgggattttacggagactgaggagtctgtgattttgcggtcgaatcttgtcgctgacaacgtgaggaa |
13879587 |
T |
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| Q |
101 |
ggaagagattgatgtctgtgttgatcacggtactctcaggattgaggatgttcttcccggtcgaaatctgttttcagtaacacttaacttgaaagggaag |
200 |
Q |
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| T |
13879586 |
ggaagagattgatgtctgtgttgatcacggtactctcaggattgaggatgttcttcccggtcgaaatctgttttcagtaacacttaacttgaaagggaag |
13879487 |
T |
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| Q |
201 |
cactgcgactttgttaacactaaagccaaaatgatagagaacaatttcattgaagttgtggttcctaagctcaagaacaaggaagaagatgaagatgaag |
300 |
Q |
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| T |
13879486 |
cactgcgactttgttaacactaaagccaaaatgatagagaacaatttcattgaagttgtggttcctaagctcaagaacaaggaagaagacgaagatgaag |
13879387 |
T |
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| Q |
301 |
a |
301 |
Q |
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| T |
13879386 |
a |
13879386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 9 - 298
Target Start/End: Complemental strand, 13875461 - 13875172
Alignment:
| Q |
9 |
aacgatgatgatgatcttgttctctgggattttacggagactgaggagtctgtgattttgcggtcgaatcttgtcgctgacaacgtgaggaaggaagaga |
108 |
Q |
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| T |
13875461 |
aacgatgactattatcttgttctctgtgattttgaggagaccgaggagtctttgatttttcggttgaatctggtcgccaacaacgtgaggaaggaagaga |
13875362 |
T |
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| Q |
109 |
ttgatgtctgtgttgatcacggtactctcaggattgaggatgttcttcccggtcgaaatctgttttcagtaacacttaacttgaaagggaagcactgcga |
208 |
Q |
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| T |
13875361 |
ttgatgtctgtgttgatcacggtactctcaggattaaggatgctcttccaggtcgaaatcgattttcaggtacactcgacttgaaagggaagcatttcga |
13875262 |
T |
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| Q |
209 |
ctttgttaacactaaagccaaaatgatagagaacaatttcattgaagttgtggttcctaagctcaagaacaaggaagaagatgaagatga |
298 |
Q |
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| T |
13875261 |
cgttgttaacactaaagccaaaatgatagagaacaatttccttgaaattgtggttcccaagctcaacaacaaggaagaagatgaagatga |
13875172 |
T |
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