View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15572_high_3 (Length: 407)
Name: NF15572_high_3
Description: NF15572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15572_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 4649613 - 4649428
Alignment:
| Q |
17 |
aaatacaaccgtgacatgtgtaaaacaaccacggccaaatgcttttgtcttgggttcaacttccacnnnnnnnnnnnnnnnnnnnagcatgataagattt |
116 |
Q |
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| T |
4649613 |
aaatacaaccgtgacatgtgtaaaacaaccaagaccaaatgctttcatcttgggtgcaacttccacttttttaattaatttttttagcatgataagattc |
4649514 |
T |
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| Q |
117 |
caatttgagccaaatttaaggaagaatagagtattgaggacatataaactttaaatccatgataaattagacctattgaactatat |
202 |
Q |
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| T |
4649513 |
caatttgagccgaatttaaggaagaatagagtattgaggacatataaactttaaatccatgataaattaggcctattgaactatat |
4649428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 270 - 337
Target Start/End: Complemental strand, 4649369 - 4649302
Alignment:
| Q |
270 |
gttcataagtcatattaaatagcaaagctttaagaagatacattataaactctaattttctcttttat |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4649369 |
gttcataagtcatattaaatagcaaagctttaagaagatacattataaactctaattttctcttttat |
4649302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 394
Target Start/End: Complemental strand, 4649279 - 4649246
Alignment:
| Q |
361 |
attagggacctatctttagtctcaaccttcatct |
394 |
Q |
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| T |
4649279 |
attagggacttatctttagtctcaaccttcatct |
4649246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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