View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15572_high_6 (Length: 230)
Name: NF15572_high_6
Description: NF15572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15572_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 11040856 - 11040632
Alignment:
| Q |
1 |
taacatggagcattctccccattgtaccaacttcatttaggaagtcttggccatttccctgagaaacatttagtatcttcacagcaacactaaattcttt |
100 |
Q |
| |
|
|||||||| | ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11040856 |
taacatggtgtattctacccattgtacccacttcatttaggaagtcttggccatttccctgagaaacatttagtatcttcacagcaacactaaattcttt |
11040757 |
T |
|
| Q |
101 |
tgaaatgcttcctttataaacagttccataggctccttgtcctaacatatcccgaaaattatttgtgattctcttaatttctacataagagtatctggtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11040756 |
tgaaatgcttcctttataaacagttccataggctccttgtcctaacatatccccgaaattatttgtgattctcttaatttctacataagagtatctggtt |
11040657 |
T |
|
| Q |
201 |
agcttaagaactcaatagtcttcta |
225 |
Q |
| |
|
|||||||| ||| ||||||||||| |
|
|
| T |
11040656 |
ggcttaagagctctatagtcttcta |
11040632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 11026153 - 11025929
Alignment:
| Q |
1 |
taacatggagcattctccccattgtaccaacttcatttaggaagtcttggccatttccctgagaaacatttagtatcttcacagcaacactaaattcttt |
100 |
Q |
| |
|
|||||||| | ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11026153 |
taacatggtggattctactcattgtaccaacttcatttaggaagtcttggccatttccctgagaaacatttagtatcttcacagcaacactaaattcttt |
11026054 |
T |
|
| Q |
101 |
tgaaatgcttcctttataaacagttccataggctccttgtcctaacatatcccgaaaattatttgtgattctcttaatttctacataagagtatctggtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11026053 |
tgaaatgcttcctttataaacagttccataggctccttgtcctaacatatccccgaaattatttgtgattctcttgatttctacataagagtatctggtg |
11025954 |
T |
|
| Q |
201 |
agcttaagaactcaatagtcttcta |
225 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
11025953 |
ggcttaagaactctatagtcttcta |
11025929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 10930482 - 10930269
Alignment:
| Q |
12 |
attctccccattgtaccaacttcatttaggaagtcttggccatttccctgagaaacatttagtatcttcacagcaacactaaattcttttgaaatgcttc |
111 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||| || ||||| || ||||||||||||||||||||||||||| | | ||||||||||||||||| |
|
|
| T |
10930482 |
attctacccattgtaccaacttcattgaggaaatcttgcccgtttccttgtgaaacatttagtatcttcacagcaacaatgatttcttttgaaatgcttc |
10930383 |
T |
|
| Q |
112 |
ctttataaacagttccataggctccttgtcctaacatatcccgaaaattatttgtgattctcttaatttctacataagagtatctggttagcttaagaac |
211 |
Q |
| |
|
|| |||| |||||||||||||| |||||||||||| | || | |||||||||||||||||| ||||||||| |||| |||||||| || |||||||| | |
|
|
| T |
10930382 |
ctctatatacagttccataggcaccttgtcctaacttgtcgccaaaattatttgtgattcttttaatttcttcatatgagtatcttgtgggcttaagagc |
10930283 |
T |
|
| Q |
212 |
tcaatagtcttcta |
225 |
Q |
| |
|
|| ||| ||||||| |
|
|
| T |
10930282 |
tctataatcttcta |
10930269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 10992677 - 10992473
Alignment:
| Q |
21 |
attgtaccaacttcatttaggaagtcttggccatttccctgagaaacatttagtatcttcacagcaacactaaattcttttgaaatgcttcctttataaa |
120 |
Q |
| |
|
||||||||||||||||| ||||| ||||| || ||||| ||||||| |||||||||||||||||||||| | | ||||||||||||||||||| |||| | |
|
|
| T |
10992677 |
attgtaccaacttcattgaggaaatcttgcccgtttccttgagaaaaatttagtatcttcacagcaacaatgatttcttttgaaatgcttcctctatata |
10992578 |
T |
|
| Q |
121 |
cagttccataggctccttgtcctaacatatcccgaaaattatttgtgattctcttaatttctacataagagtatctggttagcttaagaactcaatagtc |
220 |
Q |
| |
|
||||||||||||| |||||||||||| | || | ||| |||||||||||||||||||||||||||||||||||||| || | |||||| ||| ||| || |
|
|
| T |
10992577 |
cagttccataggcaccttgtcctaacttgtcactaaagttatttgtgattctcttaatttctacataagagtatctcgtgggtttaagagctctataatc |
10992478 |
T |
|
| Q |
221 |
ttcta |
225 |
Q |
| |
|
||||| |
|
|
| T |
10992477 |
ttcta |
10992473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University