View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15572_low_1 (Length: 527)
Name: NF15572_low_1
Description: NF15572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15572_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 81 - 511
Target Start/End: Original strand, 37272589 - 37273019
Alignment:
| Q |
81 |
gtttcactgtctcattctgttgatttggttaagagcaggctgcaaaatattataaagaacccaaagaatagctggtgctacaacaaacaacagaagctga |
180 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
37272589 |
gtttcactgtctcattctgttgatttggttaagagcaggctgcaaaatattataaagaacccaaagaatagctggtgttaccacaaacaacagaagctga |
37272688 |
T |
|
| Q |
181 |
cccctgttatcactaccagcagcttcagcaattgcagccatttcactagcaattgcatcttgtgttgatacaaaccctgaagctgctaacccacccccaa |
280 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37272689 |
cccctgttatcactaccagcagcttcagcaattgcagtcatttcactagcaattgcatcttgtgttgatacaaaccctgaagctgctaacccacccccaa |
37272788 |
T |
|
| Q |
281 |
gacctaaaccaattataactcctttatcgttacgcatacggttgatttggttaagtgctggttgaagaatgttgtacagaacccaagcaatggctggaat |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37272789 |
gacctaaaccaattataactcctttatcgttacgcatacggttgatttggttaagtgctggttgaagaatgttgtacagaacccaagctatggctggaat |
37272888 |
T |
|
| Q |
381 |
taatggtaacaaaagtgctaaaccacggttgtctgatgatccttctgctatttcagctatttgttgtgctgcaaaagctgcatcacaggttgagagtgtt |
480 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37272889 |
taatggtaacaaaagtgctaaaccacggttgtctgatgatccttctgctatttcagctatttgttgtgctgcaaaagctgcatcacaggttgagagtgtt |
37272988 |
T |
|
| Q |
481 |
gagaatattgcccctgctagtgctgttcctg |
511 |
Q |
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| T |
37272989 |
gagaatattgcccctgctagtgctgttcctg |
37273019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 81 - 185
Target Start/End: Original strand, 37268551 - 37268655
Alignment:
| Q |
81 |
gtttcactgtctcattctgttgatttggttaagagcaggctgcaaaatattataaagaacccaaagaatagctggtgctacaacaaacaacagaagctga |
180 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| |
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| T |
37268551 |
gtttcaccgtctcattctgttgatttggttaagagcaggctgcaaaatattataaagaacccaaagaatagctggtgcaaccacaaataacagaagctga |
37268650 |
T |
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| Q |
181 |
cccct |
185 |
Q |
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|||| |
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| T |
37268651 |
gccct |
37268655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 218 - 451
Target Start/End: Original strand, 20580779 - 20581012
Alignment:
| Q |
218 |
ccatttcactagcaattgcatcttgtgttgatacaaaccctgaagctgctaacccacccccaagacctaaaccaattataactcctttatcgttacgcat |
317 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |
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| T |
20580779 |
ccatttcactagccattgcatcttgtgttgacacaaaccctgaagctgctaacccaccaccaagacccaaaccaatgataactcctttatcgttacgcat |
20580878 |
T |
|
| Q |
318 |
acggttgatttggttaagtgctggttgaagaatgttgtacagaacccaagcaatggctggaattaatggtaacaaaagtgctaaaccacggttgtctgat |
417 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||| ||||||| |||| |||||||||||| |
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| T |
20580879 |
acggttgatttggttaagtgctggttgaagaatgttgaacagaaccgaagctatggctggaattaatggtaacagaagtgcttaaccgcggttgtctgat |
20580978 |
T |
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| Q |
418 |
gatccttctgctatttcagctatttgttgtgctg |
451 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
20580979 |
gatccttctgctatttcagctatctgttgtgctg |
20581012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 90 - 203
Target Start/End: Original strand, 39016975 - 39017088
Alignment:
| Q |
90 |
tctcattctgttgatttggttaagagcaggctgcaaaatattataaagaacccaaagaatagctggtgctacaacaaacaacagaagctgacccctgtta |
189 |
Q |
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|||||| |||||||| ||||| |||||||||||||||||||| || || |||||||| ||||||||||| ||||||||||||||||| |||||||| |
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| T |
39016975 |
tctcatcctgttgatctggttgagagcaggctgcaaaatattgtacagcacccaaaggatagctggtgcaacaacaaacaacagaagtgttcccctgttg |
39017074 |
T |
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| Q |
190 |
tcactaccagcagc |
203 |
Q |
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| T |
39017075 |
tcacttccagcagc |
39017088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 497
Target Start/End: Original strand, 39017300 - 39017376
Alignment:
| Q |
421 |
ccttctgctatttcagctatttgttgtgctgcaaaagctgcatcacaggttgagagtgttgagaatattgcccctgc |
497 |
Q |
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|||||||||||||| ||||||||||| ||||| ||||| ||||| |||||| || | ||| |||||||| ||||| |
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| T |
39017300 |
ccttctgctatttctgctatttgttgagctgcgaaagccgcatcggaggttgcaagggatgaaaatattgctcctgc |
39017376 |
T |
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