View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15572_low_10 (Length: 201)
Name: NF15572_low_10
Description: NF15572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15572_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 2345467 - 2345641
Alignment:
| Q |
20 |
gcctgaaggggtgtttggtagtagtaagtctgctacacataaatcatcagcataagaggtatatgatgagagaagaacaaaaaagaaaagaatagtgtga |
119 |
Q |
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| T |
2345467 |
gcctgaaggggtgtttgggagtagtaagtctgctacacataaatcatcagcataagaggtatatgatgagagaagaacaaaaaagaaaagaatagtgtga |
2345566 |
T |
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| Q |
120 |
atcattctgatctttacaaattggatatgggataagggaaagtgcaattgccttgctatttataatgatattctt |
194 |
Q |
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| T |
2345567 |
atcattctgatttttacaaattggatatgggataagggaaagtgcaattgccttgctatttataatgatattctt |
2345641 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 32984186 - 32984137
Alignment:
| Q |
75 |
gaggtatatgatgagagaagaacaaaaaagaaaagaatagtgtgaatcat |
124 |
Q |
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||||||||||||||||| |||||||||||||||| |||| ||||| |||| |
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| T |
32984186 |
gaggtatatgatgagaggagaacaaaaaagaaaacaataatgtgattcat |
32984137 |
T |
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