View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15572_low_2 (Length: 486)
Name: NF15572_low_2
Description: NF15572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15572_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 2 - 469
Target Start/End: Complemental strand, 11040403 - 11039939
Alignment:
| Q |
2 |
aaattatactagctaacattagcttatgttattgattgattgtaaaagatactaacgattagattaatctaatgattgagattctgccaaagagcttgaa |
101 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11040403 |
aaatcatactagctaacattagcttatgttattgattgattgtaaaagatactaatgattagattaatctaatgattgagattctgccaaagagcttgaa |
11040304 |
T |
|
| Q |
102 |
gaagttgtagaacatccaagtgaaactattttgtatagcttctatattaaaaatccgtaagcttgattcaatcgaaaagatctactacgagtatagttta |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
11040303 |
gaagttgtagaacatccaagtgaaactattttgtatagcttctatattaaaaatccgtaagcttgattcaatagaaaagatctac---gagtatagttta |
11040207 |
T |
|
| Q |
202 |
attagccttttcaagtttgaagattacatttattattgaattgaacaaagagtagagttacctttcttgtttttgggggaacaatctagttccttgttgt |
301 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| ||||||||||| |
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| T |
11040206 |
attagccttttcaagtttgaagattgcatttattattgaattgaacaaagaatagagttacctttcttgttttttgggacacaatctacttccttgttgt |
11040107 |
T |
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| Q |
302 |
cactgttactagtagtatttttccaaccacatatttttccttttgattcacagtgtttacaattaggctcagaccacgtcaaacgaagagaatcagaagg |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11040106 |
cactgttactagtagtatttttccaaccacatatttttccttttgattcacagtgtttacaattaggctcagaccacgtcaaacgaagagaatcagaagg |
11040007 |
T |
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| Q |
402 |
tttgaatgaaacattaaacattttggtgcaaaacgaaagaggaaggtcttcaatatttatactagaag |
469 |
Q |
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| T |
11040006 |
tttgaatgaaacattaaacattttggtgcaaaacgaaagaggaaggtcttcaatatttgtactagaag |
11039939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 232 - 392
Target Start/End: Complemental strand, 11025126 - 11024966
Alignment:
| Q |
232 |
tattattgaattgaacaaagagtagagttacctttcttgtttttgggggaacaatctagttccttgttgtcactgttactagtagtatttttccaaccac |
331 |
Q |
| |
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|||||||||||||||| |||| |||||||||||||||| ||||||||| ||||||||| |||||||||| ||| |||| | |||||| |||||||||| |
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| T |
11025126 |
tattattgaattgaacgaagaatagagttacctttcttctttttggggaaacaatctacttccttgttggtactattaccaacagtattcttccaaccac |
11025027 |
T |
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| Q |
332 |
atatttttccttttgattcacagtgtttacaattaggctcagaccacgtcaaacgaagaga |
392 |
Q |
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| T |
11025026 |
atatttttccttttgattcacaatgtttacaactaggctcagaccacatcaaacgaagaga |
11024966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 268 - 390
Target Start/End: Complemental strand, 10929555 - 10929433
Alignment:
| Q |
268 |
ttgtttttgggggaacaatctagttccttgttgtcactgttactagtagtatttttccaaccacatatttttccttttgattcacagtgtttacaattag |
367 |
Q |
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| T |
10929555 |
ttgtttttggcaaaacaatatacttccttgttggtactattactagtagtattcttccagtcacatctttttccttctgattcacagtgtttacaattag |
10929456 |
T |
|
| Q |
368 |
gctcagaccacgtcaaacgaaga |
390 |
Q |
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| T |
10929455 |
gctcagaccacttcaaacgaaga |
10929433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 308 - 390
Target Start/End: Complemental strand, 10990606 - 10990524
Alignment:
| Q |
308 |
tactagtagtatttttccaaccacatatttttccttttgattcacagtgtttacaattaggctcagaccacgtcaaacgaaga |
390 |
Q |
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| T |
10990606 |
tactagtagtattcttccagccacatctgtttccttttgattcacaatgtttgcaattaggctcagaccacatcaaacgaaga |
10990524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 448
Target Start/End: Complemental strand, 10990487 - 10990445
Alignment:
| Q |
406 |
aatgaaacattaaacattttggtgcaaaacgaaagaggaaggt |
448 |
Q |
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| T |
10990487 |
aatgaaacattaaacattttggtgcaaaaagaaagagggaggt |
10990445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 11025699 - 11025649
Alignment:
| Q |
2 |
aaattatactagctaacattagcttatgttattgattgattgtaaaagata |
52 |
Q |
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|||| |||||||||| | ||||||||||| |||||||||||||||| |||| |
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| T |
11025699 |
aaatcatactagctagccttagcttatgtcattgattgattgtaaaggata |
11025649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 445
Target Start/End: Complemental strand, 11024935 - 11024898
Alignment:
| Q |
408 |
tgaaacattaaacattttggtgcaaaacgaaagaggaa |
445 |
Q |
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|||||| ||||||||||||||||||| ||||||||||| |
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| T |
11024935 |
tgaaacgttaaacattttggtgcaaagcgaaagaggaa |
11024898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 10992244 - 10992192
Alignment:
| Q |
2 |
aaattatactagctaacattagcttatgttattgattgattgtaaaagatact |
54 |
Q |
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|||| |||||||| || |||| |||||| ||||||||||||||||||||||| |
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| T |
10992244 |
aaatcatactagccaaacttagtttatgtcattgattgattgtaaaagatact |
10992192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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