View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15572_low_4 (Length: 335)

Name: NF15572_low_4
Description: NF15572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15572_low_4
NF15572_low_4
[»] chr5 (2 HSPs)
chr5 (129-317)||(12384177-12384366)
chr5 (13-60)||(12384062-12384109)
[»] chr6 (4 HSPs)
chr6 (129-222)||(24586205-24586299)
chr6 (139-210)||(7733362-7733434)
chr6 (130-222)||(32934357-32934450)
chr6 (13-60)||(7733238-7733285)
[»] chr1 (3 HSPs)
chr1 (129-222)||(2980431-2980525)
chr1 (130-222)||(18550387-18550480)
chr1 (274-317)||(2980369-2980412)
[»] chr8 (3 HSPs)
chr8 (139-222)||(26589117-26589201)
chr8 (154-244)||(1163408-1163501)
chr8 (13-60)||(26588993-26589040)
[»] chr3 (1 HSPs)
chr3 (129-222)||(5700552-5700646)
[»] chr2 (1 HSPs)
chr2 (130-180)||(4791724-4791774)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 129 - 317
Target Start/End: Original strand, 12384177 - 12384366
Alignment:
Q  129 ttaaatcttcataatatagtagaactagaagacaaaaataagaataaaggtaccaacttaaaagg-atcaatgtttattaacaaaataacaacaagtcca 227  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||| || ||||||||| || || |||||||||||||||||||||||||||||||    
T  12384177 ttaaatctccataatatagtagaactagaagacaaaaataaaaataaagataacaacttaaaggggattaatgtttattaacaaaataacaacaagtcca 12384276  T
Q  228 ccttcaagtatgatctccaagtgaccaagactccaaaccagttaatgattgaaaacgcataagaaaatagaagaggtagaaaagcttaat 317  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12384277 ccttcaagtatgatctccaagtaaccaagactccaaaccagttaatgattgaaaacgcagaagaaaatagaagaggtagaaaagcttaat 12384366  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 12384062 - 12384109
Alignment:
Q  13 aatataactaattaataatttgatttcaatacaagcacaagtgagaca 60  Q
    ||||||| | |||||||| |||||| ||||||||||||||||||||||    
T  12384062 aatataattgattaataacttgattccaatacaagcacaagtgagaca 12384109  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 24586205 - 24586299
Alignment:
Q  129 ttaaatcttcataatatagtagaactagaagacaaaaataagaataaaggtaccaactta-aaaggatcaatgtttattaacaaaataacaacaa 222  Q
    ||||||||  |||||||| ||||| ||||||||||||||||||||||||||| ||||||| |  |||| ||||||||||||||||||||||||||    
T  24586205 ttaaatctcaataatataatagaattagaagacaaaaataagaataaaggtaacaacttacatgggattaatgtttattaacaaaataacaacaa 24586299  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 7733362 - 7733434
Alignment:
Q  139 ataatatagtagaactagaagacaaaaataagaataaaggtaccaactta-aaaggatcaatgtttattaaca 210  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |  |||| ||||||||||||||    
T  7733362 ataatatagtagaactagaagacaaaaataagaataaaggtaacaacttacatgggattaatgtttattaaca 7733434  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 32934357 - 32934450
Alignment:
Q  130 taaatcttcataatatagtagaactagaagacaaaaataagaataaaggtaccaactta-aaaggatcaatgtttattaacaaaataacaacaa 222  Q
    |||||||  |||||||||||||||||||||||||| ||||||||||| ||| || |||| |  |||| ||||||||||||||||  ||||||||    
T  32934357 taaatctcaataatatagtagaactagaagacaaagataagaataaatgtaacatcttacatgggattaatgtttattaacaaagcaacaacaa 32934450  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 7733238 - 7733285
Alignment:
Q  13 aatataactaattaataatttgatttcaatacaagcacaagtgagaca 60  Q
    ||||||||||||| || | |||||| ||||||||||||||||||||||    
T  7733238 aatataactaatttattacttgattccaatacaagcacaagtgagaca 7733285  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 2980525 - 2980431
Alignment:
Q  129 ttaaatcttcataatatagtagaactagaagacaaaaataagaataaaggtaccaactta-aaaggatcaatgtttattaacaaaataacaacaa 222  Q
    ||||||||  |||||||| ||||| ||||||||||||||||||||||||||| ||||||| |  |||| ||||||||||||||||||||||||||    
T  2980525 ttaaatctcaataatataatagaattagaagacaaaaataagaataaaggtaacaacttacaggggattaatgtttattaacaaaataacaacaa 2980431  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 18550387 - 18550480
Alignment:
Q  130 taaatcttcataatatagtagaactagaagacaaaaataagaataaaggtaccaactta-aaaggatcaatgtttattaacaaaataacaacaa 222  Q
    |||||||  ||||||||||||||||||||||||||||||||| |||||||| ||||||| |  |||| ||||||||||||||||  ||||||||    
T  18550387 taaatctcaataatatagtagaactagaagacaaaaataagattaaaggtaacaacttacatgggattaatgtttattaacaaagcaacaacaa 18550480  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 317
Target Start/End: Complemental strand, 2980412 - 2980369
Alignment:
Q  274 gattgaaaacgcataagaaaatagaagaggtagaaaagcttaat 317  Q
    |||||||||||||||||||||||||| ||||| |||||||||||    
T  2980412 gattgaaaacgcataagaaaatagaaaaggtaaaaaagcttaat 2980369  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 26589117 - 26589201
Alignment:
Q  139 ataatatagtagaactagaagacaaaaataagaataaaggtaccaacttaaaagg-atcaatgtttattaacaaaataacaacaa 222  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| | || || | ||||||||||||||  ||||||||    
T  26589117 ataatatagtagaactagaagacaaaaataagaataaaggtaacaacttacatggaattattgtttattaacaaagcaacaacaa 26589201  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 244
Target Start/End: Complemental strand, 1163501 - 1163408
Alignment:
Q  154 tagaagacaaaaataagaataaaggtaccaacttaaaaggatcaatgtttattaacaaaataacaacaa---gtccaccttcaagtatgatctc 244  Q
    ||||||||||||||||||||||||||| ||||||| | |||| ||| ||| |||||||||| |||||||    | |||||||||||||||||||    
T  1163501 tagaagacaaaaataagaataaaggtaacaacttacatggattaatatttgttaacaaaatgacaacaatagcttcaccttcaagtatgatctc 1163408  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 26588993 - 26589040
Alignment:
Q  13 aatataactaattaataatttgatttcaatacaagcacaagtgagaca 60  Q
    |||||||||||||||| | |||||| ||||||||||||||||||||||    
T  26588993 aatataactaattaattacttgattccaatacaagcacaagtgagaca 26589040  T

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Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 5700646 - 5700552
Alignment:
Q  129 ttaaatcttcataatatagtagaactagaagacaaaaataagaataaaggtaccaactta-aaaggatcaatgtttattaacaaaataacaacaa 222  Q
    ||||||||  |||||||| ||||| ||||||||||||||||  ||||||||| ||||||| |  |||| ||||||||||||||||||||||||||    
T  5700646 ttaaatctcaataatataatagaattagaagacaaaaataaagataaaggtaacaacttacaggggattaatgtttattaacaaaataacaacaa 5700552  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 4791724 - 4791774
Alignment:
Q  130 taaatcttcataatatagtagaactagaagacaaaaataagaataaaggta 180  Q
    |||||||  ||||||||||||||||||||||||||||||||| ||||||||    
T  4791724 taaatctcaataatatagtagaactagaagacaaaaataagattaaaggta 4791774  T

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