View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15572_low_6 (Length: 245)
Name: NF15572_low_6
Description: NF15572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15572_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 36 - 212
Target Start/End: Original strand, 9937642 - 9937818
Alignment:
| Q |
36 |
aaattcaaataaaattgttgtacaaagaaaacattcatgatttagtaagatgggacaattcattatattcaaacaaaaatgcaattaaatatgaacacca |
135 |
Q |
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| T |
9937642 |
aaattcaattaaaattgttgtacaaagaaaacattcatgatttagtaagatgagacaattcattacattcaaacaaaaatgcaattaaatatgaacacca |
9937741 |
T |
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| Q |
136 |
atatcacctagtgtcagcatctgcatctcgccagtaagcaatcaacgcatcgagtgccttctcatctcttgcacatg |
212 |
Q |
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| T |
9937742 |
atatcacctagcgtcagcatctgcatctcgcaagtaagcaatcaacgcatcgagtgccttctcatctcttgcacatg |
9937818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 9336190 - 9336237
Alignment:
| Q |
149 |
tcagcatctgcatctcgccagtaagcaatcaacgcatcgagtgccttc |
196 |
Q |
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| T |
9336190 |
tcagcatctgcagctcgcaagtaagcaatcaacgcatcaagtgccttc |
9336237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 42364921 - 42364976
Alignment:
| Q |
143 |
ctagtgtcagcatctgcatctcgccagtaagcaatcaacgcatcgagtgccttctc |
198 |
Q |
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|||| ||||||||||||| ||||| ||||||||||||| ||||| ||||||||||| |
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| T |
42364921 |
ctagcgtcagcatctgcagctcgcaagtaagcaatcaatgcatcaagtgccttctc |
42364976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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