View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15572_low_9 (Length: 224)

Name: NF15572_low_9
Description: NF15572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15572_low_9
NF15572_low_9
[»] chr2 (6 HSPs)
chr2 (18-91)||(3872346-3872419)
chr2 (152-206)||(3870649-3870703)
chr2 (89-131)||(3870748-3870790)
chr2 (16-86)||(21384699-21384769)
chr2 (19-70)||(12211300-12211351)
chr2 (51-87)||(18470154-18470190)
[»] chr3 (4 HSPs)
chr3 (16-83)||(49758127-49758194)
chr3 (51-91)||(8235948-8235988)
chr3 (16-84)||(53056307-53056375)
chr3 (17-88)||(28247262-28247333)
[»] chr4 (4 HSPs)
chr4 (16-81)||(10981668-10981733)
chr4 (16-76)||(14065251-14065312)
chr4 (49-90)||(29306361-29306402)
chr4 (16-72)||(7712920-7712976)
[»] chr7 (5 HSPs)
chr7 (25-84)||(5357313-5357372)
chr7 (16-85)||(33429092-33429162)
chr7 (16-69)||(43140499-43140553)
chr7 (16-85)||(13640882-13640951)
chr7 (16-85)||(13703263-13703332)
[»] chr1 (4 HSPs)
chr1 (16-87)||(42561000-42561071)
chr1 (37-84)||(40288097-40288144)
chr1 (40-85)||(3156290-3156335)
chr1 (16-68)||(21365536-21365588)
[»] scaffold0009 (1 HSPs)
scaffold0009 (16-77)||(53664-53725)
[»] chr8 (5 HSPs)
chr8 (16-83)||(4438251-4438317)
chr8 (49-92)||(12542200-12542243)
chr8 (16-87)||(12701469-12701539)
chr8 (16-86)||(32161889-32161961)
chr8 (16-64)||(19341828-19341876)
[»] chr6 (2 HSPs)
chr6 (16-85)||(25342069-25342138)
chr6 (18-87)||(8174621-8174692)
[»] chr5 (1 HSPs)
chr5 (16-85)||(27175125-27175194)
[»] scaffold0013 (1 HSPs)
scaffold0013 (16-64)||(96991-97039)


Alignment Details
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 3872346 - 3872419
Alignment:
Q  18 tataacattattataaaagaaattgtttcaggatataattgaaataataaaaaagccaacccaaaatctcttat 91  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3872346 tataacattattataaaagaaattgtttaaggatataattgaaataataaaaaagccaacccaaaatctcttat 3872419  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 3870703 - 3870649
Alignment:
Q  152 tattttggctacatagttctaacgaatgttgtagatgatcccgtgaatgagtata 206  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3870703 tattttggctacatagttctaacgaatgttgcagatgatcccgtgaatgagtata 3870649  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 3870790 - 3870748
Alignment:
Q  89 tatggtataaataattttcaagtatgcaactcatacatacata 131  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  3870790 tatggtataaataattttcaagtatgcaactcatacatacata 3870748  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 21384699 - 21384769
Alignment:
Q  16 aatataacattattataaaagaaattgtttcaggatataattgaaataataaaaaagccaacccaaaatct 86  Q
    |||||| ||||||||||  | ||||||||| ||| |||||||||||||| |||||||||||||||||||||    
T  21384699 aatatagcattattatatgaaaaattgtttaagggtataattgaaataacaaaaaagccaacccaaaatct 21384769  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 12211351 - 12211300
Alignment:
Q  19 ataacattattataaaagaaattgtttcaggatataattgaaataataaaaa 70  Q
    ||||||||| |||| || ||||||||| |||||||||||||||| |||||||    
T  12211351 ataacattaatatataaaaaattgtttaaggatataattgaaattataaaaa 12211300  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 18470190 - 18470154
Alignment:
Q  51 tataattgaaataataaaaaagccaacccaaaatctc 87  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  18470190 tataattgaaataacaaaaaagtcaacccaaaatctc 18470154  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 49758127 - 49758194
Alignment:
Q  16 aatataacattattataaaagaaattgtttcaggatataattgaaataataaaaaagccaacccaaaa 83  Q
    ||||||| ||||||||| || ||||||||| ||| ||||||||||||||||||||| |||||||||||    
T  49758127 aatataatattattatagaaaaaattgtttaagggtataattgaaataataaaaaatccaacccaaaa 49758194  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 8235988 - 8235948
Alignment:
Q  51 tataattgaaataataaaaaagccaacccaaaatctcttat 91  Q
    |||||||||||||||||||||| ||||||||||||| ||||    
T  8235988 tataattgaaataataaaaaagtcaacccaaaatctattat 8235948  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 53056375 - 53056307
Alignment:
Q  16 aatataacattattataaaagaaattgtttcaggatataattgaaataataaaaaagccaacccaaaat 84  Q
    ||||||||||||||||| || ||  ||||| ||| |||||||||||||| ||||||| ||| |||||||    
T  53056375 aatataacattattatagaaaaatatgtttaagggtataattgaaataacaaaaaagtcaatccaaaat 53056307  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 28247333 - 28247262
Alignment:
Q  17 atataacattattataaaagaaattgtttcaggatataattgaaataataaaaaagccaacccaaaatctct 88  Q
    ||||||||| ||||||  | || |||||| ||| |||||||| || ||||||||| ||||||||||||||||    
T  28247333 atataacatcattatatgaaaatttgtttaagggtataattggaacaataaaaaatccaacccaaaatctct 28247262  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 10981668 - 10981733
Alignment:
Q  16 aatataacattattataaaagaaattgtttcaggatataattgaaataataaaaaagccaacccaa 81  Q
    |||||||||||||||||| | || |||||| ||| |||||||| ||||| ||||||||||||||||    
T  10981668 aatataacattattataagaaaatttgtttaagggtataattggaataacaaaaaagccaacccaa 10981733  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 14065312 - 14065251
Alignment:
Q  16 aatataacattattataaaagaaat-tgtttcaggatataattgaaataataaaaaagccaa 76  Q
    |||||||||||||||||||| |||| ||||| | | |||||||| |||||||||||||||||    
T  14065312 aatataacattattataaaaaaaatatgtttaaaggtataattgtaataataaaaaagccaa 14065251  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 29306361 - 29306402
Alignment:
Q  49 gatataattgaaataataaaaaagccaacccaaaatctctta 90  Q
    ||||||||||||||||| ||||||||| ||||||||||||||    
T  29306361 gatataattgaaataatgaaaaagccatcccaaaatctctta 29306402  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 7712976 - 7712920
Alignment:
Q  16 aatataacattattataaaagaaattgtttcaggatataattgaaataataaaaaag 72  Q
    |||||| ||||||||||||| || | |||| ||||||||||||||| || |||||||    
T  7712976 aatatagcattattataaaaaaattagtttaaggatataattgaaacaacaaaaaag 7712920  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 5357372 - 5357313
Alignment:
Q  25 ttattataaaagaaattgtttcaggatataattgaaataataaaaaagccaacccaaaat 84  Q
    |||||||| || ||||| ||| |||||||||||| |||||||||||| ||||||||||||    
T  5357372 ttattatagaaaaaattatttaaggatataattggaataataaaaaatccaacccaaaat 5357313  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 33429162 - 33429092
Alignment:
Q  16 aatataacattattata-aaagaaattgtttcaggatataattgaaataataaaaaagccaacccaaaatc 85  Q
    ||||||||||||||||| ||| || |||||| |||||||| ||| ||||| ||||||| |||| |||||||    
T  33429162 aatataacattattatagaaaaaatttgtttaaggatatagttggaataacaaaaaaggcaacacaaaatc 33429092  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 43140553 - 43140499
Alignment:
Q  16 aatataacattattata-aaagaaattgtttcaggatataattgaaataataaaa 69  Q
    ||||||||||||||||| ||||||||| |||  ||||||||||||||||| ||||    
T  43140553 aatataacattattatagaaagaaattatttagggatataattgaaataacaaaa 43140499  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 13640951 - 13640882
Alignment:
Q  16 aatataacattattataaaagaaattgtttcaggatataattgaaataataaaaaagccaacccaaaatc 85  Q
    |||||||||||||||||| | || ||||||  ||||||||||| ||||| ||| ||| || |||||||||    
T  13640951 aatataacattattataacaaaatttgtttagggatataattggaataacaaagaagtcagcccaaaatc 13640882  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 13703332 - 13703263
Alignment:
Q  16 aatataacattattataaaagaaattgtttcaggatataattgaaataataaaaaagccaacccaaaatc 85  Q
    ||||||| |||||||||| | || |||||| |||||||||||| ||||| ||| ||| || |||||||||    
T  13703332 aatataagattattataagaaaatttgtttaaggatataattggaataacaaagaagtcagcccaaaatc 13703263  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 42561000 - 42561071
Alignment:
Q  16 aatataacattattataaaagaaattgtttcaggatataattgaaataataaaaaagccaacccaaaatctc 87  Q
    ||||||||||||||||| || || |||||| ||| |||||||| |||||| ||||| |||| ||||||||||    
T  42561000 aatataacattattatagaaaaatttgtttaagggtataattggaataatgaaaaatccaatccaaaatctc 42561071  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 40288097 - 40288144
Alignment:
Q  37 aaattgtttcaggatataattgaaataataaaaaagccaacccaaaat 84  Q
    ||||||||| |||| ||||||||||||||| ||||| |||||||||||    
T  40288097 aaattgtttgaggacataattgaaataatataaaagtcaacccaaaat 40288144  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 3156290 - 3156335
Alignment:
Q  40 ttgtttcaggatataattgaaataataaaaaagccaacccaaaatc 85  Q
    |||||| || ||||||||||||||| ||||||||||||| ||||||    
T  3156290 ttgtttaagaatataattgaaataacaaaaaagccaacctaaaatc 3156335  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 21365588 - 21365536
Alignment:
Q  16 aatataacattattataaaagaaattgtttcaggatataattgaaataataaa 68  Q
    ||||||||||||||||||||    |||||| ||| ||||||||||||||||||    
T  21365588 aatataacattattataaaattttttgtttaaggttataattgaaataataaa 21365536  T

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Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 53725 - 53664
Alignment:
Q  16 aatataacattattataaaagaaattgtttcaggatataattgaaataataaaaaagccaac 77  Q
    ||||||||||||||||| || || |||||| | ||||||||||||||||| |||||| ||||    
T  53725 aatataacattattatagaaaaatttgtttaaagatataattgaaataatgaaaaagtcaac 53664  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 4438317 - 4438251
Alignment:
Q  16 aatataacattattataaaagaaattgtttcaggatataattgaaataataaaaaagccaacccaaaa 83  Q
    |||||||||||||||||||| || |||||| ||| |||||||| ||||||||| || | |||||||||    
T  4438317 aatataacattattataaaaaaatttgttt-agggtataattggaataataaataatctaacccaaaa 4438251  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 12542243 - 12542200
Alignment:
Q  49 gatataattgaaataataaaaaagccaacccaaaatctcttatg 92  Q
    ||||||||||||||||||||||||  | ||||||||||||||||    
T  12542243 gatataattgaaataataaaaaagatagcccaaaatctcttatg 12542200  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 12701539 - 12701469
Alignment:
Q  16 aatataacattattataaaagaaattgtttcaggatataattgaaataataaaaaagccaacccaaaatctc 87  Q
    ||||||||||||| |||||| ||||| ||| ||| |||||||||||||| ||||||| || | |||||||||    
T  12701539 aatataacattatcataaaaaaaattattt-agggtataattgaaataacaaaaaagtcagcacaaaatctc 12701469  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 32161961 - 32161889
Alignment:
Q  16 aatataacattattata--aaagaaattgtttcaggatataattgaaataataaaaaagccaacccaaaatct 86  Q
    ||||||||||||||| |  ||| ||||||||| ||| |||||||  ||||| ||||||| |||||||||||||    
T  32161961 aatataacattattacagaaaaaaaattgtttaagggtataattagaataacaaaaaagtcaacccaaaatct 32161889  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 19341876 - 19341828
Alignment:
Q  16 aatataacattattataaaagaaattgtttcaggatataattgaaataa 64  Q
    ||||||||||||||||| || ||||| ||| | ||||||||||||||||    
T  19341876 aatataacattattatagaaaaaattatttaaagatataattgaaataa 19341828  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 25342138 - 25342069
Alignment:
Q  16 aatataacattattataaaagaaattgtttcaggatataattgaaataataaaaaagccaacccaaaatc 85  Q
    |||||||||||| |||| || || |||||| ||| |||||||||||| |||||||| |||  ||||||||    
T  25342138 aatataacattaatatagaaaaatttgtttaagggtataattgaaattataaaaaatccagtccaaaatc 25342069  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 8174621 - 8174692
Alignment:
Q  18 tataacattattataaaagaaa--ttgtttcaggatataattgaaataataaaaaagccaacccaaaatctc 87  Q
    |||||||||||||||||| |||  |||||| |  |||||| |||||||| ||||||| || |||||||||||    
T  8174621 tataacattattataaaaaaaaaattgtttaaaaatataaatgaaataacaaaaaagtcagcccaaaatctc 8174692  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 27175194 - 27175125
Alignment:
Q  16 aatataacattattataaaagaaattgtttcaggatataattgaaataataaaaaagccaacccaaaatc 85  Q
    ||||||||||||||||| || | ||||||| | | |||||||| ||||| |||||| ||| |||||||||    
T  27175194 aatataacattattatagaaaacattgtttaatggtataattggaataacaaaaaatccagcccaaaatc 27175125  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 97039 - 96991
Alignment:
Q  16 aatataacattattataaaagaaattgtttcaggatataattgaaataa 64  Q
    ||||||| |||||||||||| || |||||| ||| ||||||||||||||    
T  97039 aatataatattattataaaaaaatttgtttaagggtataattgaaataa 96991  T

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