View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15573_high_12 (Length: 314)
Name: NF15573_high_12
Description: NF15573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15573_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 30666689 - 30666995
Alignment:
| Q |
1 |
tgtgaacaacaagcttgtccataaaagcaggagcaatgtaaaatccatccatagtgttgtcaaagttgtacctaaaacaccatcatcacaagttagatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30666689 |
tgtgaacaacaagcttgtccataaaagcaggagcaatgtaaaatccatccatagtgttgtcaaagttgtacctaaaacaccatcatcacaggttagatca |
30666788 |
T |
|
| Q |
101 |
aaagaaacttcatttacaaaccatagtaataaaatcatgagcaaattacgagtatttggttttgaattaacaaattgcgtagcaagtcactcactgttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30666789 |
aaagaaacttcatttacaaaccatagtaataaaatcatgagcaaattacgagtatttggttttgaattaacaaaatgcgtagcaagtcactcactgttta |
30666888 |
T |
|
| Q |
201 |
agtccagtactaaggtactcataagaactcatgactgcataatgagttccagtatcttgtggtgcttggaaaactgaatcaaccataccctttcctctga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30666889 |
agtccagtactaaggtactcataagaactcatgactgcataatgagttccagtatcttgtggtgcttggaaaactgaatcaaccataccctttcctcttg |
30666988 |
T |
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| Q |
301 |
tgatgtc |
307 |
Q |
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||||||| |
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| T |
30666989 |
tgatgtc |
30666995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 187 - 307
Target Start/End: Original strand, 34436947 - 34437067
Alignment:
| Q |
187 |
tcactcactgtttaagtccagtactaaggtactcataagaactcatgactgcataatgagttccagtatcttgtggtgcttggaaaactgaatcaaccat |
286 |
Q |
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| T |
34436947 |
tcacttactgtctaagtccagtactaatgtactcataagaactcatgactgcataatgagttccagaatcttgtggtgcttggaaaactgtatcaaccat |
34437046 |
T |
|
| Q |
287 |
accctttcctctgatgatgtc |
307 |
Q |
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|||||| ||||| ||||||| |
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| T |
34437047 |
acccttccctcttgtgatgtc |
34437067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 34436500 - 34436585
Alignment:
| Q |
1 |
tgtgaacaacaagcttgtccataaaagcaggagcaatgtaaaatccatccatagtgttgtcaaagttgtacctaaaacaccatcat |
86 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| ||||||||| ||| |||||||| |
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| T |
34436500 |
tgtgtacaacaagcttgtccataaaagcaggtgcaatgtaaaaaccatccatggtgttgtcaaggttgtacctgaaataccatcat |
34436585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6854153 - 6854189
Alignment:
| Q |
1 |
tgtgaacaacaagcttgtccataaaagcaggagcaat |
37 |
Q |
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||||||||||||||||||||||||| ||||| ||||| |
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| T |
6854153 |
tgtgaacaacaagcttgtccataaatgcaggtgcaat |
6854189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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