View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15573_high_18 (Length: 217)
Name: NF15573_high_18
Description: NF15573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15573_high_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 4672713 - 4672544
Alignment:
| Q |
20 |
gcatgctagaaataaaatatgcaactccaaataaaatagactagtgattcatatatattgttactgatggattctgtggataaattccaatccaaccagt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4672713 |
gcatgctagaaataaaatatgcaactccaaataaaatagactagtgattcatat----tgttactgatggattctgtggataacttccaatccaaccagt |
4672618 |
T |
|
| Q |
120 |
tattcacattctcaagattaaagagtaataatgtccgatcaaacccttgtagctatttcacagtctcaagtaat |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4672617 |
tattcacattctcaagattaaagagtaataatgtccgatcaaacccttgtagctatttcacagtctcaagtaat |
4672544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University