View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15573_low_1 (Length: 878)

Name: NF15573_low_1
Description: NF15573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15573_low_1
NF15573_low_1
[»] chr4 (7 HSPs)
chr4 (1-859)||(30876968-30877826)
chr4 (563-658)||(53155190-53155286)
chr4 (563-629)||(4191664-4191734)
chr4 (563-631)||(22684590-22684661)
chr4 (563-631)||(36734818-36734889)
chr4 (563-658)||(54325084-54325182)
chr4 (613-658)||(23819067-23819112)
[»] chr2 (5 HSPs)
chr2 (56-284)||(39332708-39332933)
chr2 (563-658)||(37053519-37053617)
chr2 (563-660)||(17952746-17952846)
chr2 (56-193)||(30203571-30203705)
chr2 (563-658)||(18962085-18962183)
[»] chr8 (1 HSPs)
chr8 (56-256)||(12102483-12102677)
[»] chr3 (2 HSPs)
chr3 (563-659)||(38462206-38462305)
chr3 (606-657)||(28306129-28306180)
[»] chr1 (1 HSPs)
chr1 (565-660)||(4363677-4363774)
[»] chr5 (1 HSPs)
chr5 (565-631)||(37063148-37063217)
[»] chr7 (3 HSPs)
chr7 (563-636)||(35536032-35536108)
chr7 (562-658)||(27492719-27492818)
chr7 (569-659)||(5369737-5369828)
[»] chr6 (3 HSPs)
chr6 (64-198)||(17146474-17146603)
chr6 (563-604)||(29269821-29269863)
chr6 (563-653)||(29274281-29274374)


Alignment Details
Target: chr4 (Bit Score: 815; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 815; E-Value: 0
Query Start/End: Original strand, 1 - 859
Target Start/End: Complemental strand, 30877826 - 30876968
Alignment:
Q  1 atttggagatgctactgagagaattagtaaaaatggttttgaagtaaacaatgaggtaattggaagtgggtatggttcaagtttctctctggttttggat 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30877826 atttggagatgctactgagagaattggtaaaaatggttttgaagtaaacaatgaggtaattggaagtgggtatggttcaagtttctctctggttttggat 30877727  T
Q  101 agggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgtccactacagagagaagtgttgaagctttgaagaatcatagtgagg 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30877726 agggagagaggggagcttgtagaggaacctgttaaaatggaaggaaagggtgtgtccactacagagagaagtgttgaagctttgaagaatcatagtgagg 30877627  T
Q  201 ccgaaaggaggagaagagctaggattaatgcacatcttgatactcttcgttgtgtcattccaggtgctttgaaggttagttcaacataatgcttttacat 300  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30877626 cagaaaggaggagaagagctaggattaatgcacatcttgatactcttcgttgtgtcattccaggtgctttgaaggttagttcaacataatgcttttacat 30877527  T
Q  301 cttcctttctttaatcattgagaaaagtaatttaactccatgtttggataaaacctaaattaagcacttataaggtaagtacttatcacattaatgctta 400  Q
    | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30877526 catcctttctttaatcattcagaaaagtaatttaactccatgtttggataaaacctaaattaagcacttataaggtaagtacttatcacattaatgctta 30877427  T
Q  401 attattttttaataaccaattatattggtgtgaagtatccaccaaccaatatccacaatgaaatctaactagtgatgtttagtgggctctcccctcctaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30877426 attattttttaataaccaattatattggtgtgaagtatccaccaaccaatatccacaatgaaagctaactagtgatgtttagtgggctctcccctcctaa 30877327  T
Q  501 cccaagtttttcctttacacaaggatcgagcccgaaactttgcttaaaggatccgagtcagatatcatataaatgcttatgtataactatttctataaca 600  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30877326 cccaagtttttcctttacacatggatcgagcccgaaactttgcttaaaggatccgagtcagatatcatataaatgcttatgtataactatttctataaca 30877227  T
Q  601 gaaggaaataatgtcaaactgttttcatatatgttacaaaatattttcataagctatcctaagaagtttataagtcgtttccataagttccacaaacagt 700  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30877226 gaaggaaataatgtcaaactattttcatatatgttacaaaatattttcataagctatcctaagaagtttataagtcgtttccataagttccacaaacagt 30877127  T
Q  701 ttcacaagtatttttgttgatagataagttcaaataattcaatctacacaaacctaaataatttgagtaaattgtaatcattgttgacctaagctggtta 800  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30877126 ttcacaagtatttttgttggtagataagttcaaataattcaatctacacaaacctaaataatttgagtaaattgtaatcattgttgacctaagctggtta 30877027  T
Q  801 tatgattgactagggtgattaaaagaatggtagataagatcaaacttcaaaggtgtaac 859  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  30877026 tatgattgactagggtgattaaaagaatgttagataaaatcaaacttcaaaggtgtaac 30876968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 563 - 658
Target Start/End: Original strand, 53155190 - 53155286
Alignment:
Q  563 tatcatataaatgcttatgtataa-ctatttctataacagaagg-aaataatgtcaaactgttttcatatatgttacaaaatattttcataagctatc 658  Q
    ||||||||  |||||||||||||| |||||| ||||||| |||  |||||| ||| |||| |||||||||||| || ||| |||||||||||||||||    
T  53155190 tatcatatgcatgcttatgtataagctattt-tataacaaaagataaataaagtcgaactattttcatatatgctataaactattttcataagctatc 53155286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 563 - 629
Target Start/End: Original strand, 4191664 - 4191734
Alignment:
Q  563 tatcatataaatgcttatgtataa-ctatttctataacagaag---gaaataatgtcaaactgttttcata 629  Q
    |||||||||| ||||||||||||| |||||||||||||| |||    |||||| |||||||||||||||||    
T  4191664 tatcatataagtgcttatgtataagctatttctataacaaaagataaaaataaagtcaaactgttttcata 4191734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 563 - 631
Target Start/End: Complemental strand, 22684661 - 22684590
Alignment:
Q  563 tatcatataaatgcttatgtataa-ctatttctataacagaagg--aaataatgtcaaactgttttcatata 631  Q
    |||||||||||||||| ||||||| |||||||||||||| | ||  |||||| |||||| ||||||||||||    
T  22684661 tatcatataaatgcttctgtataagctatttctataacaaacggtaaaataaagtcaaattgttttcatata 22684590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 563 - 631
Target Start/End: Original strand, 36734818 - 36734889
Alignment:
Q  563 tatcatataaatgcttatgtataa-ctatttctataacagaagg--aaataatgtcaaactgttttcatata 631  Q
    |||||||||| ||||||||||||| || ||||||||||| ||||  |||||| |||||||| ||||||||||    
T  36734818 tatcatataagtgcttatgtataatctctttctataacaaaaggtaaaataaagtcaaactattttcatata 36734889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 658
Target Start/End: Complemental strand, 54325182 - 54325084
Alignment:
Q  563 tatcatataaatgcttatgtataa-ctatttctataacagaagg--aaataatgtcaaactgttttcatatatgttacaaaatattttcataagctatc 658  Q
    |||||||||| ||||| ||||||| |||||||||| ||| |||   |||||| ||||||||||||||||||| | || ||  |||||||| ||||||||    
T  54325182 tatcatataagtgcttgtgtataaactatttctattacaaaagataaaataaagtcaaactgttttcatataagctataagctattttcaaaagctatc 54325084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 658
Target Start/End: Original strand, 23819067 - 23819112
Alignment:
Q  613 gtcaaactgttttcatatatgttacaaaatattttcataagctatc 658  Q
    ||||||||||||||||||| |||| || || |||||||||||||||    
T  23819067 gtcaaactgttttcatataagttataacatgttttcataagctatc 23819112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 4e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 56 - 284
Target Start/End: Complemental strand, 39332933 - 39332708
Alignment:
Q  56 gtaattggaagtgggtatggttcaagtttctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgt 155  Q
    |||| ||||| ||| |||||||||  ||  || |||||||| ||||| || | ||| |||||||| |||||| |||| ||| ||||| |||||||||| |    
T  39332933 gtaaatggaaatggatatggttcatcttcttcactggttttagatagagaaaaaggagagcttgtggaggcagctgtgaaattggaaagaaagggtgtat 39332834  T
Q  156 ccactacagagagaagtgttgaagctttgaagaatcatagtgaggccgaaaggaggagaagagctaggattaatgcacatcttgatactcttcgttgtgt 255  Q
    |  ||   ||||||||| ||||||||||||||||||||||||| || ||||| ||||||||||| || |||||| ||||||||||||| |||||| ||||    
T  39332833 cacct---gagagaagtattgaagctttgaagaatcatagtgaagcagaaagaaggagaagagcaagaattaattcacatcttgatacacttcgtagtgt 39332737  T
Q  256 cattccaggtgctttgaaggttagttcaa 284  Q
     |||||||| |||   |||||||||||||    
T  39332736 tattccaggggctaataaggttagttcaa 39332708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 563 - 658
Target Start/End: Original strand, 37053519 - 37053617
Alignment:
Q  563 tatcatataaatgcttatgtata-actatttctataacagaagg--aaataatgtcaaactgttttcatatatgttacaaaatattttcataagctatc 658  Q
    |||||||||| |||||||||||| ||||||||||||||||||    |||||| ||||||||||||||||||| |||| ||  | ||||||| |||||||    
T  37053519 tatcatataagtgcttatgtatagactatttctataacagaaaataaaataaagtcaaactgttttcatataagttataagtttttttcattagctatc 37053617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 563 - 660
Target Start/End: Complemental strand, 17952846 - 17952746
Alignment:
Q  563 tatcatataaatgcttatgtataa-ctatttctataacagaagg--aaataatgtcaaactgttttcatatatgttacaaaatattttcataagctatcc 659  Q
    ||||||||||  |||||| ||||| |||||||||||||| |||   |||||| |||||||| |||||||||| | ||||| || ||||||||||||||||    
T  17952846 tatcatataagagcttatatataagctatttctataacaaaagataaaataaagtcaaactattttcatataagctacaagatgttttcataagctatcc 17952747  T
Q  660 t 660  Q
    |    
T  17952746 t 17952746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 193
Target Start/End: Complemental strand, 30203705 - 30203571
Alignment:
Q  56 gtaattggaagtgggtatggttcaagtttctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgt 155  Q
    |||| ||||| ||| |||||||||  ||  || |||||||||||||| || | ||| ||| |||| |||||| |||| ||| | ||| ||||||||||||    
T  30203705 gtaaatggaaatggatatggttcatcttcttcgctggttttggatagagaaaaaggagagtttgtggaggcaactgtgaaattagaaagaaagggtgtgt 30203606  T
Q  156 ccactacagagagaagtgttgaagctttgaagaatcat 193  Q
    |  ||   ||||||||| ||||||||||||||||||||    
T  30203605 cacct---gagagaagtattgaagctttgaagaatcat 30203571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 658
Target Start/End: Complemental strand, 18962183 - 18962085
Alignment:
Q  563 tatcatataaatgcttatgtataa-ctatttctataacagaagg--aaataatgtcaaactgttttcatatatgttacaaaatattttcataagctatc 658  Q
    |||||| ||| ||||||||||| | |||||| ||||||| |||   |||||| || |||||||||||||||| | || ||| |||||||||||||||||    
T  18962183 tatcatgtaagtgcttatgtattagctatttttataacaaaagataaaataaagttaaactgttttcatataagctataaactattttcataagctatc 18962085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 56 - 256
Target Start/End: Complemental strand, 12102677 - 12102483
Alignment:
Q  56 gtaattggaagtgggtatggttcaagtttctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgt 155  Q
    |||| ||||||||| |||||||||  ||  || |||||||||||||| || | ||| |||||||| |||||| |||| ||| | ||| ||||||||||||    
T  12102677 gtaaatggaagtggatatggttcatcttcttcactggttttggatagagaaaaaggagagcttgtggaggcagctgtgaaattagaaagaaagggtgtgt 12102578  T
Q  156 ccactacagagagaagtgttgaagctttgaagaatcatagtgaggccgaaaggaggagaagagctaggattaatgcacatcttgatactcttcgttgtgt 255  Q
    |  ||   | ||||||| | ||||||||||||||||||||||| || ||   |||||||||||| || ||||||  |||||||||||| |||||| ||||    
T  12102577 cacct---gggagaagtatcgaagctttgaagaatcatagtgaagcaga---gaggagaagagcaagaattaatttacatcttgatacacttcgtagtgt 12102484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 563 - 659
Target Start/End: Original strand, 38462206 - 38462305
Alignment:
Q  563 tatcatataaatgcttatgtataa-ctatttctataacagaagg--aaataatgtcaaactgttttcatatatgttacaaaatattttcataagctatcc 659  Q
    |||||||||| || |||| ||||| ||||||||||| || |||   |||||| ||||||||||||||||||||| || ||| | ||||||||||||||||    
T  38462206 tatcatataagtgtttatttataagctatttctataccaaaagataaaataaagtcaaactgttttcatatatgctataaactgttttcataagctatcc 38462305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 657
Target Start/End: Original strand, 28306129 - 28306180
Alignment:
Q  606 aaataatgtcaaactgttttcatatatgttacaaaatattttcataagctat 657  Q
    |||||| ||||||||||||||||||| |||||||  | ||||||||||||||    
T  28306129 aaataaagtcaaactgttttcatataagttacaagttgttttcataagctat 28306180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 565 - 660
Target Start/End: Complemental strand, 4363774 - 4363677
Alignment:
Q  565 tcatataaatgcttatgtataa-ctatttctataacagaagg--aaataatgtcaaactgttttcatatatgttacaaaatattttcataagctatcct 660  Q
    |||||||| ||||||||||||  |||||| ||||||| |||   |||||||||||||||||||||||||| | || ||  |||||||||||||||||||    
T  4363774 tcatataagtgcttatgtatactctattt-tataacaaaagattaaataatgtcaaactgttttcatataagctataacctattttcataagctatcct 4363677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 565 - 631
Target Start/End: Complemental strand, 37063217 - 37063148
Alignment:
Q  565 tcatataaatgcttatgtat-aactatttctataacagaag--gaaataatgtcaaactgttttcatata 631  Q
    |||||||||||||||||||| |||||||||||||||| |||   |||||| |||||||| ||||||||||    
T  37063217 tcatataaatgcttatgtataaactatttctataacaaaagataaaataaagtcaaactattttcatata 37063148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 563 - 636
Target Start/End: Original strand, 35536032 - 35536108
Alignment:
Q  563 tatcatataaatgcttatgtataa-ctatttctataacagaag--gaaataatgtcaaactgttttcatatatgtta 636  Q
    ||||||||||| |||||||||||| |||||||||||||| |||   |||||| |||||| |||||||||||| ||||    
T  35536032 tatcatataaaggcttatgtataagctatttctataacataagataaaataaagtcaaattgttttcatataagtta 35536108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 562 - 658
Target Start/End: Original strand, 27492719 - 27492818
Alignment:
Q  562 atatcatataaatgcttatgtataa-ctatttctataacagaagg--aaataatgtcaaactgttttcatatatgttacaaaatattttcataagctatc 658  Q
    ||||||||||| | ||||||||||| |||||||||||||| |||   ||||||  ||||||| |||||||||| || | || || |||||||||||||||    
T  27492719 atatcatataagttcttatgtataaactatttctataacaaaagttcaaataaaatcaaacttttttcatataagtaataagatgttttcataagctatc 27492818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 659
Target Start/End: Complemental strand, 5369828 - 5369737
Alignment:
Q  569 ataaatgcttatgtataa-ctatttctataacagaaggaaataatgtcaaactgttttcatatatgttacaaaatattttcataagctatcc 659  Q
    |||| ||||||||||||| ||| |||||||| | ||   ||||| ||||||||||||||||||||| || ||  | ||||||||||||||||    
T  5369828 ataagtgcttatgtataagctaattctataaaaaaaattaataaagtcaaactgttttcatatatgctataagctgttttcataagctatcc 5369737  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 198
Target Start/End: Complemental strand, 17146603 - 17146474
Alignment:
Q  64 aagtgggtatggttcaagtttctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgtccactaca 163  Q
    |||||| |||||||||  ||  || |||||||||||||| || | ||| |||||||  |||||| |||| ||| | ||| ||||||||||   |||  |     
T  17146603 aagtggatatggttcatcttcttcactggttttggatagagaaaaaggagagcttgcggaggcagctgtgaaattagaaagaaagggtgt---cac--ct 17146509  T
Q  164 gagagaagtgttgaagctttgaagaatcatagtga 198  Q
    ||||||||| |||||||||||||||||||||||||    
T  17146508 gagagaagtattgaagctttgaagaatcatagtga 17146474  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 563 - 604
Target Start/End: Original strand, 29269821 - 29269863
Alignment:
Q  563 tatcatataaatgcttatgtat-aactatttctataacagaag 604  Q
    |||||||||||||||| ||||| ||||||||||||||||||||    
T  29269821 tatcatataaatgcttgtgtataaactatttctataacagaag 29269863  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 563 - 653
Target Start/End: Complemental strand, 29274374 - 29274281
Alignment:
Q  563 tatcatataaatgcttatgtataa-ctatttctataacagaagg--aaataatgtcaaactgttttcatatatgttacaaaatattttcataag 653  Q
    ||||||| |||||||||||||||| ||||||||||| || |||   |||||| |||||| |||||||||||| | || ||| | ||||||||||    
T  29274374 tatcatagaaatgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctataaactgttttcataag 29274281  T

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