View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15573_low_12 (Length: 334)

Name: NF15573_low_12
Description: NF15573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15573_low_12
NF15573_low_12
[»] chr6 (14 HSPs)
chr6 (220-317)||(26909731-26909828)
chr6 (13-80)||(27587796-27587863)
chr6 (220-312)||(19413217-19413309)
chr6 (83-130)||(27587905-27587952)
chr6 (13-77)||(25487985-25488049)
chr6 (13-77)||(26061233-26061297)
chr6 (13-77)||(26081203-26081267)
chr6 (83-130)||(25487868-25487915)
chr6 (83-130)||(27312877-27312924)
chr6 (276-309)||(27588279-27588312)
chr6 (13-66)||(27659669-27659722)
chr6 (82-130)||(26634381-26634429)
chr6 (82-130)||(26740357-26740405)
chr6 (15-67)||(27599637-27599689)
[»] chr2 (1 HSPs)
chr2 (83-130)||(17989397-17989444)
[»] chr4 (1 HSPs)
chr4 (248-317)||(5083302-5083371)


Alignment Details
Target: chr6 (Bit Score: 62; Significance: 9e-27; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 220 - 317
Target Start/End: Complemental strand, 26909828 - 26909731
Alignment:
Q  220 attagagaagtaatctaaaacacaaatactcaccaagggcaggcatggattgcgcgaatgaagatacgttgagatgcagaaggatcatgtgcagtgtt 317  Q
    |||||||||||| |||||||| || | |||||||| ||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||| ||||    
T  26909828 attagagaagtactctaaaacgcacacactcaccaggggcaggcatggattgcacgaatgaagatacatcgagatgcagaaggatcatgtgcaatgtt 26909731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 27587796 - 27587863
Alignment:
Q  13 aatatctgcagcagaaacatcctccacaaaaccttacatcaggtctcaccatatccataccagagcac 80  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  27587796 aatatctgcagcacaaacatcctccacaaaaccttacatcaggtctcactatatcaataccagagcac 27587863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 220 - 312
Target Start/End: Complemental strand, 19413309 - 19413217
Alignment:
Q  220 attagagaagtaatctaaaacacaaatactcaccaagggcaggcatggattgcgcgaatgaagatacgttgagatgcagaaggatcatgtgca 312  Q
    |||||||||||||||||||||| ||||||||||||  |||| |||||||| || | |||||||||||  | ||||||||||||||||||||||    
T  19413309 attagagaagtaatctaaaacataaatactcaccagaggcatgcatggatggcacaaatgaagatacaataagatgcagaaggatcatgtgca 19413217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 27587905 - 27587952
Alignment:
Q  83 aaggatctgataaatgtcggttctcagattcagttctttatcccacat 130  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||    
T  27587905 aaggatcttataaatgtcggttgtcagattcagttctttatcccacat 27587952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 25488049 - 25487985
Alignment:
Q  13 aatatctgcagcagaaacatcctccacaaaaccttacatcaggtctcaccatatccataccagag 77  Q
    ||||| ||||||| |||||||||||| ||||  |||||||||||||||||||||| | |||||||    
T  25488049 aatatttgcagcacaaacatcctccataaaaaattacatcaggtctcaccatatcaaaaccagag 25487985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 26061297 - 26061233
Alignment:
Q  13 aatatctgcagcagaaacatcctccacaaaaccttacatcaggtctcaccatatccataccagag 77  Q
    ||||| ||||||| |||||||||||| ||||  |||||||||||||||||||||| | |||||||    
T  26061297 aatatatgcagcacaaacatcctccataaaaaattacatcaggtctcaccatatcaaaaccagag 26061233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 26081267 - 26081203
Alignment:
Q  13 aatatctgcagcagaaacatcctccacaaaaccttacatcaggtctcaccatatccataccagag 77  Q
    ||||| ||||||| |||||||||||| ||||  |||||||||||||||||||||| | |||||||    
T  26081267 aatatatgcagcacaaacatcctccataaaaaattacatcaggtctcaccatatcaaaaccagag 26081203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 25487915 - 25487868
Alignment:
Q  83 aaggatctgataaatgtcggttctcagattcagttctttatcccacat 130  Q
    |||||||| || |||||||||||||||||| | |||||||||||||||    
T  25487915 aaggatctcatgaatgtcggttctcagatttatttctttatcccacat 25487868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 27312877 - 27312924
Alignment:
Q  83 aaggatctgataaatgtcggttctcagattcagttctttatcccacat 130  Q
    |||||||| ||||||||||||||| ||||| ||||||||||| |||||    
T  27312877 aaggatctcataaatgtcggttcttagatttagttctttatcacacat 27312924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 309
Target Start/End: Original strand, 27588279 - 27588312
Alignment:
Q  276 aatgaagatacgttgagatgcagaaggatcatgt 309  Q
    ||||||||||||| ||||||||||||||||||||    
T  27588279 aatgaagatacgtcgagatgcagaaggatcatgt 27588312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 27659669 - 27659722
Alignment:
Q  13 aatatctgcagcagaaacatcctccacaaaaccttacatcaggtctcaccatat 66  Q
    |||||||| |||| |||||||||||  |||| ||||||||| ||||||||||||    
T  27659669 aatatctgtagcacaaacatcctccttaaaaacttacatcatgtctcaccatat 27659722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 26634429 - 26634381
Alignment:
Q  82 gaaggatctgataaatgtcggttctcagattcagttctttatcccacat 130  Q
    ||||||| | ||||||||||||||| ||||| ||||||||||| |||||    
T  26634429 gaaggatttcataaatgtcggttcttagatttagttctttatcacacat 26634381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 26740405 - 26740357
Alignment:
Q  82 gaaggatctgataaatgtcggttctcagattcagttctttatcccacat 130  Q
    ||||||| | ||||||||||||||| ||||| ||||||||||| |||||    
T  26740405 gaaggatttcataaatgtcggttcttagatttagttctttatcacacat 26740357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 27599637 - 27599689
Alignment:
Q  15 tatctgcagcagaaacatcctccacaaaaccttacatcaggtctcaccatatc 67  Q
    ||||||||||| || ||||||||  |||| |||||||||||| ||||||||||    
T  27599637 tatctgcagcacaagcatcctccctaaaaacttacatcaggtatcaccatatc 27599689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 17989397 - 17989444
Alignment:
Q  83 aaggatctgataaatgtcggttctcagattcagttctttatcccacat 130  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  17989397 aaggatcggataaatgttggttctcagattcagttctttatcccacat 17989444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 317
Target Start/End: Complemental strand, 5083371 - 5083302
Alignment:
Q  248 ctcaccaagggcaggcatggattgcgcgaatgaagatacgttgagatgcagaaggatcatgtgcagtgtt 317  Q
    ||||||| ||||| |||||||| || |||| ||| |||||| ||| ||||||||||||||||||| ||||    
T  5083371 ctcaccaggggcaagcatggatagcacgaaagaatatacgtcgagctgcagaaggatcatgtgcaatgtt 5083302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University