View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15573_low_13 (Length: 325)
Name: NF15573_low_13
Description: NF15573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15573_low_13 |
 | |
|
| [»] scaffold0078 (3 HSPs) |
| | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 2004896 - 2004586
Alignment:
| Q |
1 |
tgaaagacgaaggaagtgaaaaccctcccgtgtatcctgttggacccatcatcccgacaatagaaagttccggtgatgctaatgatgggttggaatgtct |
100 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2004896 |
tgaaagatgaaggaagtgaaaaccctcctgtgtatcctgttggacccatcatcccgacgatagaaagttccggtgatgctaatcatgggttggaatgtct |
2004797 |
T |
|
| Q |
101 |
aacatggttggataaacagcaaccttgttcagttttgtatgtgtcttttgggagtggcggtacactttcacaagaacaaattgttgagctggctttgggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2004796 |
aacatggttggataaacagcaaccttgttcagttttgtatgtgtcttttgggagtggcggtacactttcacaagaacaaattgttgagctggctttgggt |
2004697 |
T |
|
| Q |
201 |
ttggaattgagtaataagatattcttgtgggttttgcgagcaccaagtagtagttcatctagtgcaggatatttttcagcacaaaatgatgctgacactt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2004696 |
ttggaattgagtaataagatattcttgtgggttttgcgagcaccaagtagtagttcatctagtgcaggatatttttcagcacaaaatgatgctgacactt |
2004597 |
T |
|
| Q |
301 |
ggcagtttttg |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
2004596 |
ggcagtttttg |
2004586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 1968739 - 1969048
Alignment:
| Q |
1 |
tgaaagacgaaggaagtgaaaaccctcccgtgtatcctgttggacccatcatcccgacaatagaaagttccggtgatgctaatgatgggttggaatgtct |
100 |
Q |
| |
|
||||||| || |||||||| |||||||| ||||||||||||||||| || |||| ||| | |||||| ||||||| | | |||| ||||| ||||| |
|
|
| T |
1968739 |
tgaaagaggagggaagtgacaaccctccagtgtatcctgttggaccaattatccaaacagaaacaagttcaggtgatgatgctaatggcttggagtgtct |
1968838 |
T |
|
| Q |
101 |
aacatggttggataaacagcaaccttgttcagttttgtatgtgtcttttgggagtggcggtacactttcacaagaacaaattgttgagctggctttgggt |
200 |
Q |
| |
|
| ||||||||||||||||| ||||| |||||||||||||| ||||| |||||||| |||||||||||||| ||||||||||| ||||||||||| ||| |
|
|
| T |
1968839 |
ggcctggttggataaacagcagccttgctcagttttgtatgtatctttcgggagtggtggtacactttcacacgaacaaattgtggagctggctttaggt |
1968938 |
T |
|
| Q |
201 |
ttggaattgagtaataagatattcttgtgggttttgcgagcaccaagtagtagttcatctagtgcaggatatttttcagcacaaaatgatgctgacactt |
300 |
Q |
| |
|
||||||||||||||||| | ||||| |||||||||||||||||| ||||| ||||||||||||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
1968939 |
ttggaattgagtaataaaaaattctcgtgggttttgcgagcaccgagtagcagttcatctagtgcaggatatctttcagcagaaaatgatattgacactt |
1969038 |
T |
|
| Q |
301 |
ggcagttttt |
310 |
Q |
| |
|
||||||||| |
|
|
| T |
1969039 |
tgcagttttt |
1969048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 9 - 291
Target Start/End: Complemental strand, 2011883 - 2011601
Alignment:
| Q |
9 |
gaaggaagtgaaaaccctcccgtgtatcctgttggacccatcatcccgacaatagaaagttccggtgatgctaatgatgggttggaatgtctaacatggt |
108 |
Q |
| |
|
|||||||||| |||||| | || |||||||||||||||||||||| |||| || | |||| | ||||| | | |||| ||||| ||||| |||||| |
|
|
| T |
2011883 |
gaaggaagtggcaacccttctgtctatcctgttggacccatcatccagacagtaacaggttctgttgatgatgctaatggtttggagtgtctgtcatggt |
2011784 |
T |
|
| Q |
109 |
tggataaacagcaaccttgttcagttttgtatgtgtcttttgggagtggcggtacactttcacaagaacaaattgttgagctggctttgggtttggaatt |
208 |
Q |
| |
|
| || ||||| ||| ||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2011783 |
tagacaaacaacaatcttgttcagttttgtatgtgtctttcggtagtggtggtacactttcacacgaacaaattgttgagctggctttgggtttggaatt |
2011684 |
T |
|
| Q |
209 |
gagtaataagatattcttgtgggttttgcgagcaccaagtagtagttcatctagtgcaggatatttttcagcacaaaatgatg |
291 |
Q |
| |
|
||||||| ||| |||| | |||||| ||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||| |
|
|
| T |
2011683 |
gagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctaatgcagcatatctttcagcacaaaatgatg |
2011601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 105 - 310
Target Start/End: Complemental strand, 2008172 - 2007967
Alignment:
| Q |
105 |
tggttggataaacagcaaccttgttcagttttgtatgtgtcttttgggagtggcggtacactttcacaagaacaaattgttgagctggctttgggtttgg |
204 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| || |||||||| ||||| ||||||||||||| |
|
|
| T |
2008172 |
tggttggataaacagcaaccttgttcggttttgtatgtatcttttgggagtggaggtacactttcacaggagcaaattgtggagctagctttgggtttgg |
2008073 |
T |
|
| Q |
205 |
aattgagtaataagatattcttgtgggttttgcgagcaccaagtagtagttcatctagtgcaggatatttttcagcacaaaatgatgctgacacttggca |
304 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||| |||||||| |||||||| ||| |
|
|
| T |
2008072 |
aattgagtaatacaaaattcttgtgggttttgcgagcaccgagtagcagttcatctagtgcaggatatctttcagcagaaaatgatattgacactttgca |
2007973 |
T |
|
| Q |
305 |
gttttt |
310 |
Q |
| |
|
|||||| |
|
|
| T |
2007972 |
gttttt |
2007967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 9 - 289
Target Start/End: Original strand, 1964811 - 1965091
Alignment:
| Q |
9 |
gaaggaagtgaaaaccctcccgtgtatcctgttggacccatcatcccgacaatagaaagttccg---gtgatgctaatgatgggttggaatgtctaacat |
105 |
Q |
| |
|
|||||||||| |||||| | |||||||||||||||||||||||| ||| || | |||| | |||||||||||| | ||||| ||||| ||| |
|
|
| T |
1964811 |
gaaggaagtggcaacccttctgtgtatcctgttggacccatcatcgatacagtaacatgttctgaccgtgatgctaatggt---ttggagtgtctgtcat |
1964907 |
T |
|
| Q |
106 |
ggttggataaacagcaaccttgttcagttttgtatgtgtcttttgggagtggcggtacactttcacaagaacaaattgttgagctggctttgggtttgga |
205 |
Q |
| |
|
|||| || ||||| ||| ||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| |||||||| |||| || || |
|
|
| T |
1964908 |
ggttagacaaacaacaatcttgttcagttttgtatgtgtctttcgggagtggtggtacactttcacacgaacaaattgttcagctggctctggggttaga |
1965007 |
T |
|
| Q |
206 |
attgagtaataagatattcttgtgggttttgcgagcaccaagtagtagttcatctagtgcaggatatttttcagcacaaaatga |
289 |
Q |
| |
|
|||||||||| ||| |||| | |||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
1965008 |
attgagtaatcagaaattcctatgggttgtgtgagcaccaagtagtagttcatctagtgcagcatatctttcagcacaaaatga |
1965091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 72 - 233
Target Start/End: Complemental strand, 2018602 - 2018441
Alignment:
| Q |
72 |
ggtgatgctaatgatgggttggaatgtctaacatggttggataaacagcaaccttgttcagttttgtatgtgtcttttgggagtggcggtacactttcac |
171 |
Q |
| |
|
||||||| | || |||||||| | ||||| |||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| || |||||||| | |
|
|
| T |
2018602 |
ggtgatgatgataatgggttgaagtgtctggcatggttggacaaacagcaaacttgttcagttttgtatgtttcttttgggagtggtggcacactttcgc |
2018503 |
T |
|
| Q |
172 |
aagaacaaattgttgagctggctttgggtttggaattgagtaataagatattcttgtgggtt |
233 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| | | |||||| |||||| |
|
|
| T |
2018502 |
aagaacaaattaatgagctggctttgggtttggaattgagtaatcataaattcttatgggtt |
2018441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 5 - 233
Target Start/End: Complemental strand, 2015286 - 2015058
Alignment:
| Q |
5 |
agacgaaggaagtgaaaaccctcccgtgtatcctgttggacccatcatcccgacaatagaaagttccggtgatgctaatgatgggttggaatgtctaaca |
104 |
Q |
| |
|
|||||||||||||||||||| || |||||| ||||||||||||| |||| ||| || || || ||||||| | | || ||| |||||||| || |
|
|
| T |
2015286 |
agacgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaacatctggtgatgatgctaataagtttgaatgtctggca |
2015187 |
T |
|
| Q |
105 |
tggttggataaacagcaaccttgttcagttttgtatgtgtcttttgggagtggcggtacactttcacaagaacaaattgttgagctggctttgggtttgg |
204 |
Q |
| |
|
|||||||| ||||| | |||||||||||| ||||||||||||| |||||||| || |||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
2015186 |
tggttggacaaacaacggccttgttcagttctgtatgtgtctttcgggagtggtggaacactttcgcaagaacaaattaatgagctggctttgggtttgg |
2015087 |
T |
|
| Q |
205 |
aattgagtaataagatattcttgtgggtt |
233 |
Q |
| |
|
||||||||||| | | |||||| |||||| |
|
|
| T |
2015086 |
aattgagtaatcataaattcttatgggtt |
2015058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 1963147 - 1963390
Alignment:
| Q |
9 |
gaaggaagtgaaaaccctcccgtgtatcctgttggacccatcatcccgacaatagaaagttccggtgatgctaatgatgggttggaatgtctaacatggt |
108 |
Q |
| |
|
|||||||||||||||| || |||||| ||||||||||||| |||| ||| || || || ||||||| | | || ||| || ||||| ||||||| |
|
|
| T |
1963147 |
gaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaacatctggtgatgatgctaataagtttgagtgtctgacatggt |
1963246 |
T |
|
| Q |
109 |
tggataaacagcaaccttgttcagttttgtatgtgtcttttgggagtggcggtacactttcacaagaacaaattgttgagctggctttgggtttggaatt |
208 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| |||||||| ||||| || |||||||| ||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
1963247 |
tggacaaacaatgtccttgttcagttttgtatgtttcttttggtagtggtggcacactttcgcaagaacaaattgatgagttggctttgggtttggaatt |
1963346 |
T |
|
| Q |
209 |
gagtaataagatattcttgtgggttttgcgagcaccaagtagta |
252 |
Q |
| |
|
||||||| | | |||||| |||||| | |||| |||||||||| |
|
|
| T |
1963347 |
gagtaatcataaattcttatgggttgtaagagctccaagtagta |
1963390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 166 - 279
Target Start/End: Original strand, 2436704 - 2436817
Alignment:
| Q |
166 |
tttcacaagaacaaattgttgagctggctttgggtttggaattgagtaataagatattcttgtgggttttgcgagcaccaagtagtagttcatctagtgc |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||| ||||||| ||| |||||| |||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
2436704 |
tttcacaagaacaaattgttgagctggctttcggtctggaatcgagtaatcagaaattcttatgggttgtaagagcaccaaatagtagttcatctagtgc |
2436803 |
T |
|
| Q |
266 |
aggatatttttcag |
279 |
Q |
| |
|
|| ||| ||||||| |
|
|
| T |
2436804 |
agcatacttttcag |
2436817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 2433036 - 2433163
Alignment:
| Q |
9 |
gaaggaagtgaaaaccctcccgtgtatcctgttggacccatcatcccgacaatagaaagttc---cggtgatgctaatgatgggttggaatgtctaacat |
105 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||| ||||||| |||||| || |||||||||| || |||||| ||||| ||| |
|
|
| T |
2433036 |
gaaggaagtgaaaatcctcttgtgtatcctgttggacccatcatccagacaataacaagttctgacgatgatgctaat-at--gttggagtgtctgtcat |
2433132 |
T |
|
| Q |
106 |
ggttggataaacagcaaccttgttcagtttt |
136 |
Q |
| |
|
|||||||| | || |||||||| |||||||| |
|
|
| T |
2433133 |
ggttggatgaccaacaaccttgctcagtttt |
2433163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 3700975 - 3701032
Alignment:
| Q |
192 |
gctttgggtttggaattgagtaataagatattcttgtgggttttgcgagcaccaagta |
249 |
Q |
| |
|
|||||||| ||||| ||||||||| ||| |||||||||||||||| ||| ||| |||| |
|
|
| T |
3700975 |
gctttggggttggagttgagtaatcagaaattcttgtgggttttgagagaacctagta |
3701032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 91 - 251
Target Start/End: Original strand, 5902402 - 5902562
Alignment:
| Q |
91 |
tggaatgtctaacatggttggataaacagcaaccttgttcagttttgtatgtgtcttttgggagtggcggtacactttcacaagaacaaattgttgagct |
190 |
Q |
| |
|
|||| ||||| |||||||| ||||||| ||||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||||||||||| |||| | |
|
|
| T |
5902402 |
tggagtgtctgacatggttacataaacaacaaccttgttcagttttgtatgtttcttttggaagtggtggtgcactttcacaagaacaaattgatgagtt |
5902501 |
T |
|
| Q |
191 |
ggctttgggtttggaattgagtaataagatattcttgtgggttttgcgagcaccaagtagt |
251 |
Q |
| |
|
|||| | |||||||||||||||||| | | |||||| |||||| | |||||||||||||| |
|
|
| T |
5902502 |
ggctattggtttggaattgagtaatcataaattcttatgggttgtaagagcaccaagtagt |
5902562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 102 - 251
Target Start/End: Original strand, 5905897 - 5906046
Alignment:
| Q |
102 |
acatggttggataaacagcaaccttgttcagttttgtatgtgtcttttgggagtggcggtacactttcacaagaacaaattgttgagctggctttgggtt |
201 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||| |||||||| || || ||| |||||||||||||||||| || |||||| ||| | |||| |
|
|
| T |
5905897 |
acatggttagataaacagcagccttgttcagttttgtatgtttcttttggaagcggtggtgcactttcacaagaacaaactgatgagctagctattggtt |
5905996 |
T |
|
| Q |
202 |
tggaattgagtaataagatattcttgtgggttttgcgagcaccaagtagt |
251 |
Q |
| |
|
|||||||||||||| | | |||||| |||||| | |||||||||||||| |
|
|
| T |
5905997 |
tggaattgagtaatcataaattcttatgggttgtaagagcaccaagtagt |
5906046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 22055 - 22139
Alignment:
| Q |
128 |
ttcagttttgtatgtgtcttttgggagtggcggtacactttcacaagaacaaattgttgagctggctttgggtttggaattgagt |
212 |
Q |
| |
|
||||||||||||||| |||||||| ||||| || |||||||| ||| |||||| |||||| ||||| ||||||||||||||| |
|
|
| T |
22055 |
ttcagttttgtatgtttcttttggaagtggtggaacactttctcaaacacaaatcaatgagctagcttttggtttggaattgagt |
22139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 2805 - 2885
Alignment:
| Q |
132 |
gttttgtatgtgtcttttgggagtggcggtacactttcacaagaacaaattgttgagctggctttgggtttggaattgagt |
212 |
Q |
| |
|
||||||||||| |||||||| ||||| || |||||||||||| ||| || ||| || ||||| ||||||||||||||| |
|
|
| T |
2805 |
gttttgtatgtttcttttggaagtggtggaacactttcacaaagacagatgaatgaactagcttttggtttggaattgagt |
2885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 57348 - 57428
Alignment:
| Q |
132 |
gttttgtatgtgtcttttgggagtggcggtacactttcacaagaacaaattgttgagctggctttgggtttggaattgagt |
212 |
Q |
| |
|
||||||||||| |||||||| ||||| || |||||||| ||| |||||| ||| || ||||| ||||||||||||||| |
|
|
| T |
57348 |
gttttgtatgtttcttttggaagtggtggaacactttctcaaacacaaataaatgaactagcttttggtttggaattgagt |
57428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 15496 - 15416
Alignment:
| Q |
132 |
gttttgtatgtgtcttttgggagtggcggtacactttcacaagaacaaattgttgagctggctttgggtttggaattgagt |
212 |
Q |
| |
|
||||||||||| |||||||| ||||| || |||||||| ||| |||||| ||| || ||||| ||||||||||||||| |
|
|
| T |
15496 |
gttttgtatgtttcttttggaagtggtggaacactttctcaaacacaaataaatgaactagcttttggtttggaattgagt |
15416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University