View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15573_low_17 (Length: 281)
Name: NF15573_low_17
Description: NF15573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15573_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 51852424 - 51852696
Alignment:
| Q |
1 |
caaccccaacttttactaggctcgaacaatggtcgaaatcgaacacccagaacccccaaaacccccagaactcgaaactcttacaagcttgaagaagaaa |
100 |
Q |
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| T |
51852424 |
caaccccaacttttacttggctcgaacaatggtcgaagtcgaacacccagaacccccaaaacccccagaactccaaactcttacaagcttgaagaagaaa |
51852523 |
T |
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| Q |
101 |
gtagaatcttgctatcacgtgttaaaagtgattgttgttccccagttggaagcaaatccaaagagcatttccgagaacaaacaaaagaaggacagagaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
51852524 |
gtagaatcttgctatcacgtgttaaaagtgattgttgttccccagttggaagcaaatccaaagagcattcccgagaacaaacaaaagaaggacagagaca |
51852623 |
T |
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| Q |
201 |
caaggtgttgaggccacaacttagtaagattatcatcactagccttgagttctcagaagcactgccctttgct |
273 |
Q |
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| T |
51852624 |
caaggtgttgaggccacaacttagtaagattatcatcactagccttgagttctcagaagcactaccctttgct |
51852696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 87 - 273
Target Start/End: Original strand, 51822598 - 51822787
Alignment:
| Q |
87 |
gcttgaagaagaaagtagaatcttgctatcacgtgttaaaagtgattgttgttccccagttggaagcaaatccaaagagcatttccgagaacaaacaaaa |
186 |
Q |
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|||||||||||||| ||| ||| ||||| || ||||||||||||||||||||||||||||||| ||||| |||||||| | ||||||||||| |||| |
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| T |
51822598 |
gcttgaagaagaaacaagactctcattatcaagtattaaaagtgattgttgttccccagttggaagtaaatctaaagagcactcccgagaacaaataaaa |
51822697 |
T |
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| Q |
187 |
gaaggacagagac---acaaggtgttgaggccacaacttagtaagattatcatcactagccttgagttctcagaagcactgccctttgct |
273 |
Q |
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| T |
51822698 |
gaaggacaacgacagaagaaggttttgaggccacaacttagtaaaattatcatcactagccttgagttctcagaagcactgccctttgct |
51822787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 51862615 - 51862805
Alignment:
| Q |
1 |
caaccccaacttttactaggctcgaacaatggtcgaaatcgaacacccagaacccccaaaacccccagaactcgaaactcttacaagcttgaagaagaaa |
100 |
Q |
| |
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||||| || |||||||||||||||| ||| || || ||||| |||| |||||||||||| |||||||| | |||| || |||| |||| ||||| | |
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| T |
51862615 |
caaccgcagcttttactaggctcgagaaataatcaaagtcgaatccccataacccccaaaactcccagaacgcccaactttttcaagattgatgaagaca |
51862714 |
T |
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| Q |
101 |
gtagaatcttgctatcacgtgttaaaagtgattgttgttccccagttggaagcaaatccaaagagcatttccgagaacaaacaaaagaagg |
191 |
Q |
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| T |
51862715 |
cgagaatctcattgtcaagtattaaaagtgattattattccccggtcggaaccaaatccaaagagcactcccgggaactaacaaaagaagg |
51862805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 51862864 - 51862902
Alignment:
| Q |
235 |
atcactagccttgagttctcagaagcactgccctttgct |
273 |
Q |
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| T |
51862864 |
atcactagccttgagttctcagaagcactaccttttgct |
51862902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 2833171 - 2833134
Alignment:
| Q |
157 |
tccaaagagcatttccgagaacaaacaaaagaaggaca |
194 |
Q |
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| T |
2833171 |
tccaaagatcattcccgagaacaaacaaaagaaggaca |
2833134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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