View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15573_low_18 (Length: 273)
Name: NF15573_low_18
Description: NF15573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15573_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 45535150 - 45534906
Alignment:
| Q |
19 |
cattgcagttgagaaaggccatacgaccccttaacttagctaactaatttaaatgtatagttgcgcacaccaagttactcagtgaatctggttaggaatg |
118 |
Q |
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| T |
45535150 |
cattgcagttgagaaaggccatacggccccttaacttagctaactaatttaaatgtatagttgcgcacaccaagttactcattgaatctggttaggactg |
45535051 |
T |
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| Q |
119 |
ggtgctaaatgtattagcatgtataaagcaacaacatatacacagagacactaacatgtgaacaccaataattattttgaaaaataatataattcaattg |
218 |
Q |
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| T |
45535050 |
ggtgctaagtgtattagcatgtataaagcaacaacatatacatagagacactaacatgtgaacactgataattattttaaaaaataatataatttaattg |
45534951 |
T |
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| Q |
219 |
tcggtgtcgaatataggaacgtattagacaccaaacacgcctatg |
263 |
Q |
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| T |
45534950 |
tcggtgtcgaatacggggacgtattagacaccaaacatgcctatg |
45534906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 44338356 - 44338518
Alignment:
| Q |
22 |
tgcagttgagaaaggccatacgaccccttaacttagctaactaatttaaatgtatagttgcgcacaccaagttactcagtgaatc-tggttagg-aatgg |
119 |
Q |
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| T |
44338356 |
tgcagttcagaaaggccatatggctccttaaattagttgactaatttaaaggtatatttgcgcacaccaagttagtcaatgaaacatggttaggaaatgg |
44338455 |
T |
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| Q |
120 |
gtgctaaatgtattagcatgtataaagcaacaacatatacacagagacactaacatgtgaaca |
182 |
Q |
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| T |
44338456 |
ctattaaatgtattagcatgtataaaacgtcgacatatacccagagacattaacatgtgaaca |
44338518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 21 - 216
Target Start/End: Original strand, 24564315 - 24564510
Alignment:
| Q |
21 |
ttgcagttgagaaaggccatacgaccccttaacttagctaactaatttaaatgtatagttgcgcacaccaagttactcagtgaatctggttaggaatggg |
120 |
Q |
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|||||||| |||||||||||| | ||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||| ||||| ||||| |||||||| |
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| T |
24564315 |
ttgcagtttagaaaggccatatggccccttaacttagctgactaatttaaatgtatatttgcgcagaccaagttactcaatgaatatggtttggaatggg |
24564414 |
T |
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| Q |
121 |
tgctaaatgtattagcatgtataaagcaacaacatatacacagagacactaacatgtgaacaccaataattattttgaaaaataatataattcaat |
216 |
Q |
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| T |
24564415 |
tattaaatgtattggcatgtataaagcatcggaatatacacagagacactaacatctgaacaccgacaattattttaaaaaataatataattcaat |
24564510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 9800540 - 9800736
Alignment:
| Q |
19 |
cattgcagttgagaaaggccatacgaccccttaacttagctaactaatttaaatgtatagttgcgcacaccaagttactcagtgaatctggttaggaatg |
118 |
Q |
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||||||| || | |||||||||| | ||||||||||||||| ||||||||||||||||| ||| || |||||||||||||| ||||| |||||| ||||| |
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| T |
9800540 |
cattgcaattcaaaaaggccatatggccccttaacttagctgactaatttaaatgtatatttgtgcccaccaagttactcaatgaatatggttatgaatg |
9800639 |
T |
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| Q |
119 |
ggtgctaaatgtattagcatgtataaagcaacaacatatacacagagacactaacatgtgaacaccaataattattttgaaaaataatataattcaat |
216 |
Q |
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||| ||||||||||||||||||||||||| || |||||||| |||||||||||||| |||| ||| ||||||| ||| ||||||||||||||||||| |
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| T |
9800640 |
ggtattaaatgtattagcatgtataaagcatcagcatatacatagagacactaacatctgaataccgataatta-tttaaaaaataatataattcaat |
9800736 |
T |
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