View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15573_low_2 (Length: 490)
Name: NF15573_low_2
Description: NF15573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15573_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-165; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 14 - 308
Target Start/End: Original strand, 31008886 - 31009180
Alignment:
| Q |
14 |
gaaccatcaacgtgaaaactctcatataagagtttttaacattgcgacaaattcaaattattagtgttaacttgtcatctcgatctcattcaaagatgta |
113 |
Q |
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| T |
31008886 |
gaaccatcaacgtgaaaactctcatataagagtttttaacattgcgacaaattcaaattattagtgttaacttgtcatctcgatctcattcaaagatgta |
31008985 |
T |
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| Q |
114 |
ttgagtcaaattaatttttattaagataacaaacaagttgttatacttatatatatcattttcttttgacttttatatataggacgttgtcatattttga |
213 |
Q |
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| T |
31008986 |
ttgagtcaaattaatttttattaagataacaaacaagttgttatacttatatatatcattttcttttgacttttatatataggacgttgtcatattttga |
31009085 |
T |
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| Q |
214 |
taatttgcctcctcaagaaggcctaacataatttcatcttctaattctatcattagatgcttttaaattttcatcacctccacaaatgcctccac |
308 |
Q |
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| T |
31009086 |
taatttgcctcctcaagaaggcctaacataatttcatcttctaattctatcattagatgcttttaaattttcatcacctccacaaatgcctccac |
31009180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 373 - 475
Target Start/End: Original strand, 31009245 - 31009347
Alignment:
| Q |
373 |
aatcccaatacatgtcaatagtgatggtgaaagctacaaatcttgtgcaccttttagatgtggagatttcaccaacattagttacccattttggagtact |
472 |
Q |
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| T |
31009245 |
aatcccaatacatgtcaatagtgacggtgaaagctacaaatcttgtgcaccttttagatgtggagatttcaccaacattagttacccattttggagtatt |
31009344 |
T |
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| Q |
473 |
aac |
475 |
Q |
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| T |
31009345 |
aac |
31009347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 377 - 475
Target Start/End: Original strand, 30976925 - 30977023
Alignment:
| Q |
377 |
ccaatacatgtcaatagtgatggtgaaagctacaaatcttgtgcaccttttagatgtggagatttcaccaacattagttacccattttggagtactaac |
475 |
Q |
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| T |
30976925 |
ccaatacatgtcactagtgatgttgaaagcttcaaatcttgtgcaccttttagttgtggaaatttcaccaatattagttacccattttggagtattaac |
30977023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 377 - 475
Target Start/End: Original strand, 30983364 - 30983462
Alignment:
| Q |
377 |
ccaatacatgtcaatagtgatggtgaaagctacaaatcttgtgcaccttttagatgtggagatttcaccaacattagttacccattttggagtactaac |
475 |
Q |
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| T |
30983364 |
ccaatacatgtcactagtgatgttgaaagcttcaaatcttgtgcaccttttagttgtggaaatttcaccaatattagttacccattttggagtattaac |
30983462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 377 - 475
Target Start/End: Original strand, 30989528 - 30989626
Alignment:
| Q |
377 |
ccaatacatgtcaatagtgatggtgaaagctacaaatcttgtgcaccttttagatgtggagatttcaccaacattagttacccattttggagtactaac |
475 |
Q |
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| T |
30989528 |
ccaatacatgtcactagtgatgttgaaagcttcaaatcttgtgcaccttttagttgtggaaatttcaccaatattagttacccattttggagtattaac |
30989626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 373 - 469
Target Start/End: Original strand, 30941464 - 30941560
Alignment:
| Q |
373 |
aatcccaatacatgtcaatagtgatggtgaaagctacaaatcttgtgcaccttttagatgtggagatttcaccaacattagttacccattttggagt |
469 |
Q |
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| T |
30941464 |
aatcccaatacatatcactagtgacgttgaaagcttcaaatcttgtgcaccttttagttgtggaaatttcaccaacgttagttatccattttggagt |
30941560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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