View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15573_low_21 (Length: 231)
Name: NF15573_low_21
Description: NF15573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15573_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 9085784 - 9085581
Alignment:
| Q |
12 |
aacctgtgtcaatgaatgcttttgagcttatttctagatcggaaagcttcaatcttgacaatttgttcgagagggaaaaggtgtgcgaaaaaattattat |
111 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
9085784 |
aaccggtgtcaatgaatgcttttgagcttatttctagatcggaaagcttcaatcttgacaatttgtttgagagggaaaaggtgtgtgaaaaaattattat |
9085685 |
T |
|
| Q |
112 |
gtgctagtcaacattttaaagtggcatactttgcaaaatata-cttgattcctccttattagtagtaattagctaacaaaatattgatgattatgattat |
210 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9085684 |
gtgctattcaacattttaaagtggcatgctttgcaaaatataccttgattcctccttattagtagtaattagctaacaaaatattgatgattatgattat |
9085585 |
T |
|
| Q |
211 |
tctt |
214 |
Q |
| |
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|||| |
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|
| T |
9085584 |
tctt |
9085581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 9077008 - 9076809
Alignment:
| Q |
12 |
aacctgtgtcaatgaatgcttttgagcttatttctagatcggaaagcttcaatcttgacaatttgttcgagagggaaaaggtgtgcgaaaaaattattat |
111 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||| |||||||||||| |||||||||| ||| |
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| T |
9077008 |
aaccggtgtcaatgaatgcttttgagcttatttctagatcggacagcttcaatcttggcaatttgtttgagaaggaaaaggtgtgtgaaaaaattagtat |
9076909 |
T |
|
| Q |
112 |
gtgctagtcaacattttaaagtggcatactttgcaaaatatacttgattcctccttattagtagtaattagctaacaaaatattgatgattatgattatt |
211 |
Q |
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|||||| ||||||||||||||| | || | ||| |||||||||| ||| ||||| |||||||||||||| ||||||||||| |||| |||||||||| |
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| T |
9076908 |
gtgctattcaacattttaaagtagtatgcgttggaaaatatactcgat---tcctttttagtagtaattagataacaaaatatcgatggctatgattatt |
9076812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 6416988 - 6416785
Alignment:
| Q |
12 |
aacctgtgtcaatgaatgcttttgagcttatttctagatcggaaagcttcaatcttgacaatttgttcgagagggaaaaggtgtgcgaaaaaattattat |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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|
| T |
6416988 |
aaccggtgtcaatgaatgcttttgagcttatttctagatcggaaagcttcaatcttgacaatttgtttgagagggaaaaggtgtgtgaaaaaattattat |
6416889 |
T |
|
| Q |
112 |
gtgctagtcaacattttaaagtggcatactttgcaaaatata-cttgattcctccttattagtagtaattagctaacaaaatattgatgattatgattat |
210 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6416888 |
gtgctattcaacattttaaagtggcatgctttgcaaaatataccttgattcctccttattagtagtaattagctaacaaaatattgatgattatgattat |
6416789 |
T |
|
| Q |
211 |
tctt |
214 |
Q |
| |
|
|||| |
|
|
| T |
6416788 |
tctt |
6416785 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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