View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15573_low_3 (Length: 483)
Name: NF15573_low_3
Description: NF15573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15573_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 40 - 441
Target Start/End: Original strand, 28735199 - 28735588
Alignment:
| Q |
40 |
tttggtgtattgtagaacgtaagtgacatctcttaatctttaatgtgtttttaattttctgttgttctatgcaatttaaaataggtatccacttttctat |
139 |
Q |
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| T |
28735199 |
tttggtgtattgcagaacgtaagcaacgtctctttctctttaaagtgtttgtaattttctgttgttctatgcaatttaaaataggtatccacttttctat |
28735298 |
T |
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| Q |
140 |
tatcctaagcttaatcctacgttattgtttgacactgaaattgttcagtactaaaattctttatgtagagaaagtgattcattccccatcctcgcatttt |
239 |
Q |
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| T |
28735299 |
tagccta------------cattattgtttgacactgaaattgttaagtactaacattctttatgtagagaaagttattcgttccccatccacgcatttt |
28735386 |
T |
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| Q |
240 |
aactttgtctttagattttaaagatattccacgtccaggaatttacgcatcgattaagttgaagtcgggctaaatctactgcaaatacttttaatatgat |
339 |
Q |
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| T |
28735387 |
aactttgtctttagattttaatgatattccgcggccaggaatttttgcatcgattaagttgaagtcaggataaatctactgcaaatacttttcatatgat |
28735486 |
T |
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| Q |
340 |
gcaattttttcttatgttggagattgtattttgcaggagaaagcacacagtgatttctacttatttgataggtaaagatgcatacttaatattcccatgg |
439 |
Q |
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| T |
28735487 |
gcaattttttcttatgttggagattgtattttgcaggagaaagcactcaaagatttctgctaatttgatagggaaagatgcctacttaatatttccaagg |
28735586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 408 - 470
Target Start/End: Original strand, 28730842 - 28730904
Alignment:
| Q |
408 |
taggtaaagatgcatacttaatattcccatggtttactgtgttttacattttggttggttttc |
470 |
Q |
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| T |
28730842 |
taggtaaagatgcatacttaatattcccatggtttactgtgttttacattttggttggttttc |
28730904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 28735032 - 28735099
Alignment:
| Q |
18 |
tatatcgcatttttgttttatgtttggtgtattgtagaacgtaagtgacatctcttaatctttaatgt |
85 |
Q |
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| T |
28735032 |
tatatcgcatttttgttttacgtttggtgtattgtagaacgtaagcgacatctctttctctttaatgt |
28735099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 34863114 - 34863054
Alignment:
| Q |
76 |
tctttaatgtgtttttaattttctgttgttctatgcaatttaaaataggtatccacttttct |
137 |
Q |
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| T |
34863114 |
tctttactgtgtttttagttttctgttgttccatccaatttaaaa-aggtattcccttttct |
34863054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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